Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 0.0e+00 1184.1 570 100.0
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 0.0e+00 1100.5 570 93.0
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 8.1e-292 1006.5 566 84.8
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 6.8e-291 1003.4 566 85.0
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 3.4e-290 1001.1 567 84.5
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 6.4e-289 996.9 570 84.2
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 8.3e-289 996.5 564 84.4
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 3.2e-288 994.6 567 82.5
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 4.1e-288 994.2 543 86.2
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 4.1e-288 994.2 567 83.8
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 5.4e-288 993.8 564 84.0
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 9.2e-288 993.0 564 84.0
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.6e-287 992.3 548 85.4
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 2.1e-287 991.9 564 84.0
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 2.1e-287 991.9 572 83.4
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 6.0e-287 990.3 564 84.0
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 6.0e-287 990.3 575 83.5
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 7.8e-287 989.9 543 85.6
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 7.8e-287 989.9 547 86.1
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.0e-286 989.6 548 85.2
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 1.0e-286 989.6 547 85.6
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 3.0e-286 988.0 543 85.3
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 8.6e-286 986.5 562 83.3
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 1.5e-285 985.7 547 85.4
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 1.5e-285 985.7 570 83.0
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 1.5e-285 985.7 566 83.6
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 1.9e-285 985.3 549 85.2
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 1.9e-285 985.3 568 82.7
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 1.9e-285 985.3 568 82.7
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 4.3e-285 984.2 566 83.0
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 4.3e-285 984.2 567 83.1
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.2e-284 982.6 570 82.8
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 1.2e-284 982.6 571 82.3
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 1.2e-284 982.6 571 82.0
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 1.6e-284 982.2 547 84.6
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 2.1e-284 981.9 566 82.3
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 2.8e-284 981.5 573 80.8
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 4.7e-284 980.7 570 82.6
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 4.7e-284 980.7 546 85.0
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 1.1e-283 979.5 547 84.5
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 1.1e-283 979.5 570 82.5
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 1.4e-283 979.2 555 83.8
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 4.0e-283 977.6 566 83.4
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 4.0e-283 977.6 547 84.1
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 6.8e-283 976.9 566 82.5
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 8.9e-283 976.5 551 83.7
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 8.9e-283 976.5 547 84.1
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 1.7e-281 972.2 571 82.3
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 2.2e-281 971.8 561 82.4
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 2.9e-281 971.5 562 82.4
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 6.4e-281 970.3 590 80.2
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 4.2e-280 967.6 547 83.9
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 4.2e-280 967.6 547 83.5
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 5.4e-280 967.2 547 83.5
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 9.3e-280 966.5 547 83.4
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 1.6e-279 965.7 546 83.2
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 6.0e-279 963.8 547 83.4
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 3.9e-278 961.1 546 82.6
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 1.1e-277 959.5 546 82.2
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 1.9e-277 958.7 546 82.8
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 2.5e-277 958.4 563 81.0
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 5.6e-277 957.2 546 82.4
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 9.6e-277 956.4 563 80.8
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 2.1e-276 955.3 546 82.4
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 3.6e-276 954.5 546 82.6
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 6.2e-276 953.7 542 83.0
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.8e-275 952.2 567 81.1
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 1.8e-275 952.2 546 82.1
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 9.0e-275 949.9 546 82.8
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 2.6e-274 948.3 595 77.1
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 5.8e-274 947.2 547 80.6
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 7.6e-274 946.8 541 82.6
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 1.3e-273 946.0 546 81.9
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 2.2e-273 945.3 546 81.3
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 2.4e-272 941.8 546 81.0
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 3.2e-272 941.4 547 81.0
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 1.2e-271 939.5 542 83.0
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 2.1e-271 938.7 541 82.8
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 3.5e-271 937.9 546 81.0
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 3.5e-271 937.9 547 80.8
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.6e-270 933.7 547 80.8
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 4.3e-269 931.0 554 80.0
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 3.6e-268 927.9 547 80.1
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 3.6e-268 927.9 566 77.7
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 1.4e-267 926.0 544 79.8
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 6.9e-267 923.7 573 77.5
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 1.2e-266 922.9 573 76.8
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 1.5e-266 922.5 553 80.1
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 1.7e-265 919.1 546 79.9
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 3.8e-265 917.9 548 80.1
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.1e-263 912.1 552 79.3
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 2.7e-263 911.8 521 83.5
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 6.0e-263 910.6 542 79.9
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 1.0e-262 909.8 548 80.5
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 2.1e-260 902.1 566 77.4
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 1.1e-259 899.8 566 78.1
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 3.7e-252 874.8 551 75.3
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 2.4e-251 872.1 545 74.7
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 2.2e-249 865.5 550 74.9
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 2.9e-249 865.1 548 77.7
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 3.8e-249 864.8 552 75.2
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.5e-247 858.2 542 75.6
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 6.1e-247 857.4 542 75.5
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 2.8e-244 848.6 566 73.3
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 2.4e-243 845.5 494 81.0
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 4.1e-243 844.7 551 74.0
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 1.2e-239 833.2 558 73.8
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 8.8e-238 827.0 550 74.7
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 5.3e-235 817.8 564 69.9
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 8.5e-233 810.4 452 86.1
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 1.5e-229 799.7 506 76.3
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 2.0e-229 799.3 421 89.5
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 3.5e-226 788.5 566 70.1
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 1.8e-222 776.2 538 69.7
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 3.0e-222 775.4 542 68.6
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 4.4e-221 771.5 422 86.7
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 3.1e-219 765.4 535 68.2
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 8.8e-214 747.3 532 67.5
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 1.8e-206 723.0 536 65.3
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 4.4e-205 718.4 535 64.7
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.5e-200 703.4 538 66.0
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.5e-200 703.4 538 66.0
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 8.9e-198 694.1 603 61.0
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 5.8e-165 585.1 331 83.4
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 9.3e-163 577.8 323 84.5
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 2.1e-151 540.0 557 55.3
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 2.3e-145 520.0 548 50.5
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 1.1e-144 517.7 287 84.3
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 2.2e-132 476.9 306 75.2
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 3.0e-129 466.5 323 71.5
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 8.2e-119 431.8 352 64.2
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 3.2e-107 393.3 199 93.0
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.0e-89 333.2 502 42.8
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.6e-69 268.1 335 45.1
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 4.6e-69 266.5 186 68.3
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 1.6e-61 241.5 130 86.9
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 1.6e-58 231.5 139 77.7
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 1.2e-50 205.3 109 81.7
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 2.4e-49 201.1 128 71.9
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 1.3e-47 195.3 129 69.8
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 6.4e-47 193.0 131 73.3
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 7.1e-46 189.5 126 69.0
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 7.1e-46 189.5 126 69.0
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 3.0e-44 184.1 131 68.7
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 4.3e-43 180.3 119 68.1
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 4.3e-43 180.3 119 68.1
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 4.3e-43 180.3 95 85.3
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.8e-42 177.6 119 72.3
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 5.3e-41 173.3 118 66.9
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 5.3e-41 173.3 118 66.9
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 9.6e-35 152.5 76 89.5
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 1.9e-30 138.3 79 79.7
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 1.7e-23 115.2 189 40.7
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 8.4e-23 112.8 117 47.0
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.1e-21 108.2 86 62.8
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 2.7e-21 107.8 60 76.7
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 3.7e-18 97.4 123 45.5
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 8.5e-15 86.3 58 69.0


User provided reference genes

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