Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0075800 Salix brachista HOM05D004216 ORTHO05D004926 0.0e+00 1744.9 857 100.0
Potri.015G050800 Populus trichocarpa HOM05D004216 ORTHO05D004926 0.0e+00 1448.3 855 84.9
Manes.05G119100 Manihot esculenta HOM05D004216 ORTHO05D004926 0.0e+00 1275.4 856 74.8
Ciclev10018514m.g Citrus clementina HOM05D004216 ORTHO05D004926 0.0e+00 1200.7 859 70.2
TWI81G0292 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 0.0e+00 1187.9 860 69.9
Dinv38590 Davidia involucrata HOM05D004216 ORTHO05D004926 0.0e+00 1170.2 859 69.4
Atru.chr9.749 Acer truncatum HOM05D004216 ORTHO05D004926 0.0e+00 1163.7 859 70.1
arahy.Tifrunner.gnm1.ann1.868KN4 Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1159.8 861 67.8
arahy.Tifrunner.gnm1.ann1.CB5LZE Arachis hypogaea HOM05D004216 ORTHO05D004926 0.0e+00 1159.8 861 67.9
Cfa019828 Carpinus fangiana HOM05D004216 ORTHO05D004926 0.0e+00 1157.5 860 69.0
Ca_02536_v3 Cicer arietinum L. HOM05D004216 ORTHO05D004926 0.0e+00 1154.8 860 67.4
Glyma.17G121600 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1154.4 861 68.1
Glyma.05G013400 Glycine max HOM05D004216 ORTHO05D004926 0.0e+00 1153.3 861 67.5
Lj4g0001448 Lotus japonicus HOM05D004216 ORTHO05D004926 0.0e+00 1147.5 859 67.2
VMungo1215G1362 Vigna mungo HOM05D004216 ORTHO05D004926 0.0e+00 1146.0 860 67.1
Gohir.A07G038732 Gossypium hirsutum HOM05D004216 ORTHO05D004926 0.0e+00 1144.8 861 67.2
Thecc.03G027900 Theobroma cacao HOM05D004216 ORTHO05D004926 0.0e+00 1142.1 861 67.5
Eucgr.K02653 Eucalyptus grandis HOM05D004216 ORTHO05D004926 0.0e+00 1141.3 858 67.2
RcHm_v2.0_Chr7g0184581 Rosa chinensis HOM05D004216 ORTHO05D004926 0.0e+00 1141.3 864 68.2
CiPaw.15G126300 Carya illinoinensis HOM05D004216 ORTHO05D004926 0.0e+00 1140.9 860 67.8
Lalb_Chr12g0197541 Lupinus albus HOM05D004216 ORTHO05D004926 0.0e+00 1140.6 859 66.9
Gorai.001G045800 Gossypium raimondii HOM05D004216 ORTHO05D004926 0.0e+00 1137.5 859 67.1
Hma1.2p1_0595F.1_g186010 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1135.2 862 67.7
QL10p022943 Quercus lobata HOM05D004216 ORTHO05D004926 0.0e+00 1131.7 868 66.9
CANSAT80G0956 Cannabis sativa HOM05D004216 ORTHO05D004926 0.0e+00 1130.2 862 66.6
Hma1.2p1_0595F.1_g186000 Hydrangea macrophylla HOM05D004216 ORTHO05D004926 0.0e+00 1129.4 860 67.4
GSVIVG01008230001 Vitis vinifera HOM05D004216 ORTHO05D004926 0.0e+00 1127.9 1055 57.6
CSS0006085 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1126.3 859 66.2
CSS0012337 Camellia sinensis var. sinensis HOM05D004216 ORTHO05D004926 0.0e+00 1126.3 859 66.2
FAN18G1390 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1125.9 861 67.1
Phvul.003G177400 Phaseolus vulgaris HOM05D004216 ORTHO05D004926 0.0e+00 1125.2 860 66.5
FvH4_5g12730 Fragaria vesca HOM05D004216 ORTHO05D004926 0.0e+00 1123.2 861 67.0
FAN08G0408 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1121.3 861 66.9
FAN13G0239 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1120.9 861 66.9
PGR044G2306 Punica granatum HOM05D004216 ORTHO05D004926 0.0e+00 1120.9 858 66.6
TPR.G26791 Trifolium pratense HOM05D004216 ORTHO05D004926 0.0e+00 1119.4 862 65.7
Nn4g23713 Nelumbo nucifera HOM05D004216 ORTHO05D004926 0.0e+00 1118.2 859 66.6
Cc04_g07550 Coffea canephora HOM05D004216 ORTHO05D004926 0.0e+00 1113.6 859 65.3
FAN04G0815 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1088.2 845 66.3
CsaV3_1G006480 Cucumis sativus L. HOM05D004216 ORTHO05D004926 0.0e+00 1083.2 858 63.8
Sed0006394 Sechium edule HOM05D004216 ORTHO05D004926 0.0e+00 1082.4 858 63.2
MELO3C002074.2 Cucumis melo HOM05D004216 ORTHO05D004926 0.0e+00 1081.2 858 63.8
FAN18G2177 Fragaria x ananassa HOM05D004216 ORTHO05D004926 0.0e+00 1080.1 861 65.4
Nitab4.5_0000410g0130 Nicotiana tabacum HOM05D004216 ORTHO05D004926 1.2e-311 1073.2 860 63.3
Nitab4.5_0001599g0210 Nicotiana tabacum HOM05D004216 ORTHO05D004926 2.3e-311 1072.0 860 63.0
SalBow3G4568 Salvia bowleyana HOM05D004216 ORTHO05D004926 9.8e-310 1066.6 883 61.3
MSTRG.5865 Avicennia marina HOM05D004216 ORTHO05D004926 5.4e-308 1060.8 865 62.4
CAN.G438.113 Capsicum annuum HOM05D004216 ORTHO05D004926 1.6e-307 1059.3 859 63.0
Migut.J01004 Erythranthe guttata HOM05D004216 ORTHO05D004926 2.7e-307 1058.5 865 62.1
AUR62036947 Chenopodium quinoa HOM05D004216 ORTHO05D004926 4.6e-307 1057.7 865 62.1
Rhsim08G0138000 Rhododendron simsii HOM05D004216 ORTHO05D004926 6.0e-307 1057.4 895 61.5
Hund02527 Selenicereus undatus HOM05D004216 ORTHO05D004926 7.8e-307 1057.0 861 63.1
ClCG04G011280 Citrullus lanatus HOM05D004216 ORTHO05D004926 3.0e-306 1055.0 857 62.4
SGA_v2.0_scaffold13G06699 Striga asiatica HOM05D004216 ORTHO05D004926 6.6e-306 1053.9 865 61.4
HanXRQChr05g0153841 Helianthus annuus HOM05D004216 ORTHO05D004926 8.7e-306 1053.5 862 61.9
Sopen03g038630 Solanum pennellii HOM05D004216 ORTHO05D004926 8.7e-306 1053.5 859 62.7
Solyc03g119780.4 Solanum lycopersicum HOM05D004216 ORTHO05D004926 3.3e-305 1051.6 859 62.7
Oeu004769.3 Olea europaea HOM05D004216 ORTHO05D004926 1.2e-304 1049.7 929 58.7
AUR62032188 Chenopodium quinoa HOM05D004216 ORTHO05D004926 1.6e-304 1049.3 880 61.1
Aqoxy3G03901 Aquilegia oxysepala HOM05D004216 ORTHO05D004926 3.6e-304 1048.1 875 61.3
Lsat_1_v5_gn_5_25060 Lactuca sativa HOM05D004216 ORTHO05D004926 1.4e-303 1046.2 875 61.4
Sp5g29160 Schrenkiella parvula HOM05D004216 ORTHO05D004926 1.2e-302 1043.1 863 61.1
THA.LOC104812129 Tarenaya hassleriana HOM05D004216 ORTHO05D004926 1.5e-302 1042.7 863 62.0
CARHR067070 Cardamine hirsuta HOM05D004216 ORTHO05D004926 4.9e-301 1037.7 863 60.8
Sc10g0009590 Simmondsia chinensis HOM05D004216 ORTHO05D004926 8.4e-301 1036.9 869 61.4
AL2G33790 Arabidopsis lyrata HOM05D004216 ORTHO05D004926 4.2e-300 1034.6 863 61.0
Aa31LG4G4250 Aethionema arabicum HOM05D004216 ORTHO05D004926 1.6e-299 1032.7 864 60.5
AT1G73960 Arabidopsis thaliana HOM05D004216 ORTHO05D004926 2.7e-299 1031.9 863 60.7
Thhalv10018013m.g Eutrema salsugineum HOM05D004216 ORTHO05D004926 3.5e-299 1031.6 863 60.0
C06p48070 Brassica napus HOM05D004216 ORTHO05D004926 3.0e-298 1028.5 862 61.0
BolC6t39842H Brassica oleracea HOM05D004216 ORTHO05D004926 3.0e-298 1028.5 862 60.9
PSO017G0533 Papaver somniferum HOM05D004216 ORTHO05D004926 3.9e-298 1028.1 862 61.7
Carub.0002s2073 Capsella rubella HOM05D004216 ORTHO05D004926 5.1e-298 1027.7 863 60.3
PSO478G4514 Papaver somniferum HOM05D004216 ORTHO05D004926 6.6e-298 1027.3 862 61.6
A07p39800 Brassica napus HOM05D004216 ORTHO05D004926 2.8e-296 1021.9 862 60.6
Actinidia31032 Actinidia chinensis HOM05D004216 ORTHO05D004926 1.2e-294 1016.5 810 64.3
ATR0564G329 Amborella trichopoda HOM05D004216 ORTHO05D004926 2.0e-294 1015.8 872 60.0
BraA07t31527Z Brassica rapa HOM05D004216 ORTHO05D004926 2.6e-294 1015.4 876 59.7
Duzib205G0916 Durio zibethinus HOM05D004216 ORTHO05D004926 1.5e-289 999.6 859 61.1
EL10Ac5g11246 Beta vulgaris HOM05D004216 ORTHO05D004926 6.9e-287 990.7 862 59.2
HPP92_023478 Vanilla planifolia HOM05D004216 ORTHO05D004926 1.0e-277 960.3 869 56.2
CDE05G2534 Ceratophyllum demersum HOM05D004216 ORTHO05D004926 3.9e-274 948.3 868 55.9
ECA246G5151 Erigeron canadensis HOM05D004216 ORTHO05D004926 2.9e-269 932.2 794 59.6
Ah.11g047140 Amaranthus hybridus HOM05D004216 ORTHO05D004926 7.2e-268 927.5 818 59.2
Gohir.A07G038666 Gossypium hirsutum HOM05D004216 ORTHO05D004926 1.0e-266 923.7 837 59.3
Peaxi162Scf00015g00072 Petunia axillaris HOM05D004216 ORTHO05D004926 4.1e-263 911.8 861 56.1
Prupe.5G217000 Prunus persica HOM05D004216 ORTHO05D004926 5.5e-252 874.8 659 68.4
DCAR_001432 Daucus carota HOM05D004216 ORTHO05D004926 9.4e-252 874.0 847 53.8
Psat4g043600 Pisum sativum HOM05D004216 ORTHO05D004926 3.0e-250 869.0 677 63.7
Zm00001eb312360 Zea mays HOM05D004216 ORTHO05D004926 2.2e-245 852.8 923 50.3
MD06G1211000 Malus domestica HOM05D004216 ORTHO05D004926 2.2e-240 836.3 618 69.1
unitig_578.g15823 Utricularia gibba HOM05D004216 ORTHO05D004926 1.7e-229 800.0 877 49.9
SEGI_21625 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 1.8e-226 790.0 709 57.3
Mapoly0014s0115 Marchantia polymorpha HOM05D004216 ORTHO05D004926 2.3e-218 763.1 890 47.5
Pp3c18_6100 Physcomitrium patens HOM05D004216 ORTHO05D004926 4.3e-212 742.3 902 46.3
Pp3c21_15920 Physcomitrium patens HOM05D004216 ORTHO05D004926 1.7e-205 720.3 891 45.6
TAR371G0728 Trochodendron aralioides HOM05D004216 ORTHO05D004926 9.2e-199 698.0 544 66.2
AagrBONN_evm.TU.Sc2ySwM_117.3880 Anthoceros agrestis HOM05D004216 ORTHO05D004926 4.4e-193 679.1 864 44.9
vmacro17679 Vaccinium macrocarpon HOM05D004216 ORTHO05D004926 3.3e-188 662.9 449 72.4
COL.COLO4_22715 Corchorus olitorius HOM05D004216 ORTHO05D004926 2.1e-179 633.6 578 59.2
SMO367G1244 Selaginella moellendorffii HOM05D004216 ORTHO05D004926 1.1e-175 621.3 867 43.9
HPP92_023454 Vanilla planifolia HOM05D004216 ORTHO05D004926 2.3e-149 533.9 869 38.4
Lj9A432G69 Lonicera japonica HOM05D004216 ORTHO05D004926 7.9e-142 508.8 318 78.6
Lj9P432G41 Lonicera japonica HOM05D004216 ORTHO05D004926 4.4e-140 503.1 437 59.7
SEGI_35421 Sequoiadendron giganteum HOM05D004216 ORTHO05D004926 2.4e-138 497.3 598 46.7
Cpa.g.sc1020.1 Carica papaya HOM05D004216 ORTHO05D004926 1.7e-131 474.6 419 58.7
Os09g0410125 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 1.1e-114 418.7 323 62.8
TAR371G0173 Trochodendron aralioides HOM05D004216 ORTHO05D004926 2.0e-105 387.9 315 62.9
COL.COLO4_22716 Corchorus olitorius HOM05D004216 ORTHO05D004926 3.2e-98 364.0 248 71.0
Gohir.D07G042820 Gossypium hirsutum HOM05D004216 ORTHO05D004926 9.5e-95 352.4 305 60.3
MD06G1210800 Malus domestica HOM05D004216 ORTHO05D004926 1.1e-90 339.0 224 73.7
Haze_18609 Corylus avellana HOM05D004216 ORTHO05D004926 7.3e-79 299.7 208 72.1
Gohir.D07G042780 Gossypium hirsutum HOM05D004216 ORTHO05D004926 4.2e-74 283.9 172 77.9
Gohir.D07G042740 Gossypium hirsutum HOM05D004216 ORTHO05D004926 1.9e-58 231.9 137 80.3
Gohir.D07G042860 Gossypium hirsutum HOM05D004216 ORTHO05D004926 3.5e-57 227.6 171 67.8
Cpa.g.sc13.56 Carica papaya HOM05D004216 ORTHO05D004926 7.9e-57 226.5 144 72.2
Cpa.g.sc1020.2 Carica papaya HOM05D004216 ORTHO05D004926 3.9e-56 224.2 151 75.5
SHI18928 Sapria himalayana HOM05D004216 ORTHO05D004926 9.0e-45 186.4 164 59.1
arahy.Tifrunner.gnm1.ann1.1HJL67 Arachis hypogaea HOM05D004216 ORTHO05D004926 1.2e-44 186.0 139 69.1
Haze_18610 Corylus avellana HOM05D004216 ORTHO05D004926 2.9e-43 181.4 104 82.7
Haze_18611 Corylus avellana HOM05D004216 ORTHO05D004926 2.9e-43 181.4 104 82.7
Cfa022283 Carpinus fangiana HOM05D004216 ORTHO05D004926 3.8e-43 181.0 773 25.0
Cpa.g.sc13.54 Carica papaya HOM05D004216 ORTHO05D004926 2.5e-42 178.3 104 81.7
Medtr1091s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 2.1e-41 175.3 115 72.2
Cre13.g583500 Chlamydomonas reinhardtii HOM05D004216 ORTHO05D004926 1.1e-39 169.5 598 25.6
Haze_18607 Corylus avellana HOM05D004216 ORTHO05D004926 2.5e-39 168.3 121 66.1
Duzib084G0462 Durio zibethinus HOM05D004216 ORTHO05D004926 2.5e-39 168.3 153 58.2
PRCOL_00003918 Prasinoderma coloniale HOM05D004216 ORTHO05D004926 1.9e-34 152.1 492 25.6
SHI18930 Sapria himalayana HOM05D004216 ORTHO05D004926 5.1e-32 144.1 112 63.4
arahy.Tifrunner.gnm1.ann1.269HHI Arachis hypogaea HOM05D004216 ORTHO05D004926 1.7e-30 139.0 122 63.1
Medtr0268s0020 Medicago truncatula HOM05D004216 ORTHO05D004926 1.2e-28 132.9 73 79.5
Os09g0409950 Oryza sativa ssp. japonica HOM05D004216 ORTHO05D004926 3.7e-22 111.3 148 43.9
Lj6g0001849 Lotus japonicus HOM05D004216 ORTHO05D004926 2.6e-20 105.1 77 63.6
MCO16G579 Micromonas commoda HOM05D004216 ORTHO05D004926 5.9e-20 104.0 554 23.6
Lj9A432T73 Lonicera japonica HOM05D004216 ORTHO05D004926 3.8e-19 101.3 128 43.0
SHI18924 Sapria himalayana HOM05D004216 ORTHO05D004926 2.6e-15 88.6 62 66.1
MD14G1221500 Malus domestica HOM05D004216 ORTHO05D004926 3.3e-15 88.2 70 65.7
Lsat_1_v5_gn_3_22081 Lactuca sativa HOM05D001700 ORTHO05D013746 4.4e-15 87.8 140 39.3
arahy.Tifrunner.gnm1.ann1.FN32SY Arachis hypogaea HOM05D004216 ORTHO05D004926 8.2e-14 83.6 118 42.4
Lsat_1_v5_gn_4_156821 Lactuca sativa HOM05D001700 ORTHO05D013746 1.8e-13 82.4 51 74.5
SHI18925 Sapria himalayana HOM05D000023 ORTHO05D000014 1.8e-13 82.4 145 37.2
MD14G1221600 Malus domestica HOM05D004216 ORTHO05D004926 3.1e-13 81.6 46 71.7
SHI18929 Sapria himalayana HOM05D004216 ORTHO05D004926 4.1e-13 81.3 54 57.4
arahy.Tifrunner.gnm1.ann1.CPL525 Arachis hypogaea HOM05D004216 ORTHO05D004926 7.7e-12 77.0 48 75.0
DCAR_023664 Daucus carota HOM05D000415 ORTHO05D006649 7.7e-12 77.0 65 60.0
arahy.Tifrunner.gnm1.ann1.9R3CPH Arachis hypogaea HOM05D004216 ORTHO05D004926 1.7e-11 75.9 46 73.9
Medtr1014s0010 Medicago truncatula HOM05D004216 ORTHO05D004926 1.7e-11 75.9 43 76.7
SHI18927 Sapria himalayana HOM05D004216 ORTHO05D004926 1.6e-09 69.3 52 63.5
TWI60G0758 Tripterygium wilfordii HOM05D004216 ORTHO05D004926 2.1e-09 68.9 48 68.8
Zm00001eb099350 Zea mays HOM05D004216 ORTHO05D004926 7.5e-07 60.5 71 45.1


User provided reference genes

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