Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra15G0009300 Salix brachista HOM05D002306 ORTHO05D005773 2.7e-280 968.0 478 100.0
Potri.015G011300 Populus trichocarpa HOM05D002306 ORTHO05D005773 4.1e-196 688.3 479 76.6
Potri.012G017100 Populus trichocarpa HOM05D002306 ORTHO05D005773 1.3e-178 630.2 483 70.6
CiPaw.06G045200 Carya illinoinensis HOM05D002306 ORTHO05D005773 2.8e-152 542.7 478 60.0
Dinv29264 Davidia involucrata HOM05D002306 ORTHO05D005773 8.9e-151 537.7 478 59.2
Nn3g18949 Nelumbo nucifera HOM05D002306 ORTHO05D005773 1.3e-149 533.9 480 59.4
Prupe.2G313000 Prunus persica HOM05D002306 ORTHO05D005773 4.1e-148 528.9 480 60.2
CANSAT21G2187 Cannabis sativa HOM05D002306 ORTHO05D005773 1.2e-147 527.3 475 58.9
GSVIVG01038567001 Vitis vinifera HOM05D002306 ORTHO05D005773 3.5e-147 525.8 478 58.8
MD07G1293200 Malus domestica HOM05D002306 ORTHO05D005773 1.3e-146 523.9 473 60.0
vmacro10129 Vaccinium macrocarpon HOM05D002306 ORTHO05D005773 1.3e-146 523.9 476 58.2
Cfa016243 Carpinus fangiana HOM05D002306 ORTHO05D005773 5.1e-146 521.9 479 58.9
TWI39G0548 Tripterygium wilfordii HOM05D002306 ORTHO05D005773 5.1e-146 521.9 480 59.8
PGR142G2770 Punica granatum HOM05D002306 ORTHO05D005773 8.6e-146 521.2 478 58.6
Manes.01G185000 Manihot esculenta HOM05D002306 ORTHO05D005773 1.1e-145 520.8 481 58.8
Nn1g00292 Nelumbo nucifera HOM05D002306 ORTHO05D005773 1.5e-145 520.4 484 57.2
Sabra12G0015300 Salix brachista HOM05D002306 ORTHO05D005773 1.5e-145 520.4 457 64.6
QL09p008623 Quercus lobata HOM05D002306 ORTHO05D005773 3.3e-145 519.2 481 57.8
Actinidia06142 Actinidia chinensis HOM05D002306 ORTHO05D005773 4.3e-145 518.8 478 58.4
RcHm_v2.0_Chr1g0381481 Rosa chinensis HOM05D002306 ORTHO05D005773 5.6e-145 518.5 478 59.2
Glyma.19G065800 Glycine max HOM05D002306 ORTHO05D005773 2.1e-144 516.5 472 60.4
Thecc.03G200900 Theobroma cacao HOM05D002306 ORTHO05D005773 2.3e-143 513.1 489 58.5
CSS0036676 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D005773 5.2e-143 511.9 479 57.8
MD01G1222600 Malus domestica HOM05D002306 ORTHO05D005773 5.2e-143 511.9 473 58.8
Duzib205G1406 Durio zibethinus HOM05D002306 ORTHO05D005773 8.9e-143 511.1 478 58.8
Rhsim09G0206400 Rhododendron simsii HOM05D002306 ORTHO05D005773 2.0e-142 510.0 476 56.3
Duzib084G0543 Durio zibethinus HOM05D002306 ORTHO05D005773 7.6e-142 508.1 478 58.2
Glyma.14G162400 Glycine max HOM05D002306 ORTHO05D005773 1.3e-141 507.3 471 58.6
Lalb_Chr01g0013731 Lupinus albus HOM05D002306 ORTHO05D005773 1.3e-141 507.3 474 55.3
Eucgr.K00394 Eucalyptus grandis HOM05D002306 ORTHO05D005773 4.9e-141 505.4 475 56.6
Ciclev10020415m.g Citrus clementina HOM05D002306 ORTHO05D005773 8.4e-141 504.6 475 57.7
MELO3C005890.2 Cucumis melo HOM05D002306 ORTHO05D005773 1.1e-140 504.2 478 56.7
ClCG01G000390 Citrullus lanatus HOM05D002306 ORTHO05D005773 1.9e-140 503.4 478 56.7
VMungo0647G1725 Vigna mungo HOM05D002306 ORTHO05D005773 2.4e-140 503.1 473 58.6
FvH4_7g31980 Fragaria vesca HOM05D002306 ORTHO05D005773 7.1e-140 501.5 478 56.9
CARHR266070 Cardamine hirsuta HOM05D002306 ORTHO05D005773 1.6e-139 500.4 479 55.1
FAN06G4818 Fragaria x ananassa HOM05D002306 ORTHO05D005773 3.5e-139 499.2 478 56.7
CsaV3_5G000460 Cucumis sativus L. HOM05D002306 ORTHO05D005773 4.6e-139 498.8 478 56.7
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 6.0e-139 498.4 461 59.2
Aqoxy6G02068 Aquilegia oxysepala HOM05D002306 ORTHO05D005773 7.8e-139 498.0 478 56.7
FAN01G0065 Fragaria x ananassa HOM05D002306 ORTHO05D005773 7.8e-139 498.0 478 56.7
Gorai.008G267900 Gossypium raimondii HOM05D002306 ORTHO05D005773 7.8e-139 498.0 475 56.4
Gohir.D12G249800 Gossypium hirsutum HOM05D002306 ORTHO05D005773 3.9e-138 495.7 475 56.0
FAN10G2791 Fragaria x ananassa HOM05D002306 ORTHO05D005773 5.1e-138 495.4 501 54.3
FAN10G0091 Fragaria x ananassa HOM05D002306 ORTHO05D005773 6.6e-138 495.0 501 54.3
Phvul.001G075000 Phaseolus vulgaris HOM05D002306 ORTHO05D005773 1.5e-137 493.8 473 56.9
FAN03G1878 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.9e-137 493.4 478 56.1
Gohir.A12G249000 Gossypium hirsutum HOM05D002306 ORTHO05D005773 2.5e-137 493.0 475 55.8
THA.LOC104799971 Tarenaya hassleriana HOM05D002306 ORTHO05D005773 3.3e-137 492.7 480 55.4
Manes.05G190400 Manihot esculenta HOM05D002306 ORTHO05D005773 4.3e-137 492.3 412 63.3
Nitab4.5_0005491g0070 Nicotiana tabacum HOM05D002306 ORTHO05D005773 1.2e-136 490.7 478 56.1
Oeu037052.1 Olea europaea HOM05D002306 ORTHO05D005773 2.1e-136 490.0 478 56.7
Nitab4.5_0000548g0060 Nicotiana tabacum HOM05D002306 ORTHO05D005773 4.7e-136 488.8 478 55.4
CiPaw.05G198100 Carya illinoinensis HOM05D002306 ORTHO05D005773 8.1e-136 488.0 434 59.4
Peaxi162Scf00740g00143 Petunia axillaris HOM05D002306 ORTHO05D005773 1.1e-135 487.6 478 55.2
AT5G53050 Arabidopsis thaliana HOM05D002306 ORTHO05D005773 1.4e-135 487.3 478 55.2
Medtr1g007860 Medicago truncatula HOM05D002306 ORTHO05D005773 1.4e-135 487.3 478 55.4
PGSC0003DMG401018530 Solanum tuberosum HOM05D002306 ORTHO05D005773 1.8e-135 486.9 478 55.6
Aa31LG3G9420 Aethionema arabicum HOM05D002306 ORTHO05D005773 2.4e-135 486.5 507 51.5
DCAR_020335 Daucus carota HOM05D002306 ORTHO05D005773 3.1e-135 486.1 473 55.6
Carub.0008s1325 Capsella rubella HOM05D002306 ORTHO05D005773 5.2e-135 485.3 478 53.8
MBI06_g46366_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 5.2e-135 485.3 478 56.1
Migut.F00200 Erythranthe guttata HOM05D002306 ORTHO05D005773 6.8e-135 485.0 478 56.3
Actinidia08661 Actinidia chinensis HOM05D002306 ORTHO05D005773 8.9e-135 484.6 463 56.4
AL8G27680 Arabidopsis lyrata HOM05D002306 ORTHO05D005773 8.9e-135 484.6 521 51.4
Cpa.g.sc3.100 Carica papaya HOM05D002306 ORTHO05D005773 1.5e-134 483.8 427 59.3
Solyc03g083010.3 Solanum lycopersicum HOM05D002306 ORTHO05D005773 2.0e-134 483.4 478 54.2
Sed0011455 Sechium edule HOM05D002306 ORTHO05D005773 4.4e-134 482.3 456 56.1
Thhalv10013609m.g Eutrema salsugineum HOM05D002306 ORTHO05D005773 7.6e-134 481.5 478 53.8
Sopen03g022820 Solanum pennellii HOM05D002306 ORTHO05D005773 9.9e-134 481.1 478 54.0
BraA03t10835Z Brassica rapa HOM05D002306 ORTHO05D005773 1.7e-133 480.3 478 54.2
PSO135G0144 Papaver somniferum HOM05D002306 ORTHO05D005773 2.2e-133 479.9 475 55.2
Cc02_g01380 Coffea canephora HOM05D002306 ORTHO05D005773 2.9e-133 479.6 478 54.8
BraA03t10837Z Brassica rapa HOM05D002306 ORTHO05D005773 4.9e-133 478.8 478 54.4
PSO384G1073 Papaver somniferum HOM05D002306 ORTHO05D005773 4.9e-133 478.8 475 55.4
Lj1g0011159 Lotus japonicus HOM05D002306 ORTHO05D005773 1.9e-132 476.9 479 54.7
SalBow4G3229 Salvia bowleyana HOM05D002306 ORTHO05D005773 1.9e-132 476.9 486 54.1
A03p15450 Brassica napus HOM05D002306 ORTHO05D005773 4.2e-132 475.7 478 53.8
CAN.G481.26 Capsicum annuum HOM05D002306 ORTHO05D005773 4.2e-132 475.7 478 54.6
EL10Ac3g05271 Beta vulgaris HOM05D002306 ORTHO05D005773 7.1e-132 474.9 480 55.2
C03p18010 Brassica napus HOM05D002306 ORTHO05D005773 7.1e-132 474.9 478 53.3
BolC3t14206H Brassica oleracea HOM05D002306 ORTHO05D005773 7.1e-132 474.9 478 53.3
Ca_12784_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 9.3e-132 474.6 473 54.3
Ca_12788_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 9.3e-132 474.6 473 54.3
Sp6g15210 Schrenkiella parvula HOM05D002306 ORTHO05D005773 3.5e-131 472.6 478 53.3
BcaC01g06217 Brassica carinata HOM05D002306 ORTHO05D005773 4.6e-131 472.2 478 53.1
BcaC04g20512 Brassica carinata HOM05D002306 ORTHO05D005773 7.8e-131 471.5 478 52.7
BolC9t57152H Brassica oleracea HOM05D002306 ORTHO05D005773 7.8e-131 471.5 478 52.7
Hund11654 Selenicereus undatus HOM05D002306 ORTHO05D005773 7.8e-131 471.5 454 56.8
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 1.0e-130 471.1 501 54.7
Actinidia34230 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.3e-130 470.7 415 60.0
arahy.Tifrunner.gnm1.ann1.4T5RFS Arachis hypogaea HOM05D002306 ORTHO05D005773 1.7e-130 470.3 474 54.2
BcaB01g04217 Brassica carinata HOM05D002306 ORTHO05D005773 2.3e-130 469.9 478 53.1
BcaB08g35665 Brassica carinata HOM05D002306 ORTHO05D005773 5.1e-130 468.8 478 52.5
ECA232G4612 Erigeron canadensis HOM05D002306 ORTHO05D005773 5.1e-130 468.8 474 53.6
A03p15420 Brassica napus HOM05D002306 ORTHO05D005773 8.7e-130 468.0 478 52.7
arahy.Tifrunner.gnm1.ann1.FPLI9C Arachis hypogaea HOM05D002306 ORTHO05D005773 1.5e-129 467.2 474 53.8
BraA10t43138Z Brassica rapa HOM05D002306 ORTHO05D005773 4.3e-129 465.7 478 52.3
A10p10540 Brassica napus HOM05D002306 ORTHO05D005773 1.3e-128 464.2 478 52.1
Sp7g25780 Schrenkiella parvula HOM05D002306 ORTHO05D005773 2.1e-128 463.4 473 53.3
Atru.chr12.2238 Acer truncatum HOM05D002306 ORTHO05D005773 2.8e-128 463.0 413 59.8
Hma1.2p1_1587F.1_g292250 Hydrangea macrophylla HOM05D002306 ORTHO05D005773 1.1e-127 461.1 414 60.4
C09p42760 Brassica napus HOM05D002306 ORTHO05D005773 5.8e-126 455.3 506 49.6
Lsat_1_v5_gn_9_49801 Lactuca sativa HOM05D002306 ORTHO05D005773 1.7e-125 453.8 479 51.4
Eucgr.A01449 Eucalyptus grandis HOM05D002306 ORTHO05D005773 6.4e-125 451.8 449 54.1
PGR042G0827 Punica granatum HOM05D002306 ORTHO05D005773 6.4e-125 451.8 416 58.2
HanXRQChr04g0100471 Helianthus annuus HOM05D002306 ORTHO05D005773 2.4e-124 449.9 480 50.0
Psat6g034960 Pisum sativum HOM05D002306 ORTHO05D005773 1.2e-123 447.6 413 58.4
Sc13g0009860 Simmondsia chinensis HOM05D002306 ORTHO05D005773 2.1e-123 446.8 463 53.3
Os05g0542200 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D005773 1.3e-122 444.1 479 51.6
Hund21009 Selenicereus undatus HOM05D002306 ORTHO05D005773 1.7e-122 443.7 411 58.4
Oeu060994.1 Olea europaea HOM05D002306 ORTHO05D005773 3.0e-122 443.0 476 52.7
Actinidia08663 Actinidia chinensis HOM05D002306 ORTHO05D005773 3.9e-122 442.6 412 58.5
HanXRQChr15g0485691 Helianthus annuus HOM05D002306 ORTHO05D005773 4.3e-121 439.1 472 51.7
ATR0602G226 Amborella trichopoda HOM05D002306 ORTHO05D005773 8.1e-120 434.9 474 51.3
CDE04G0267 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 1.4e-119 434.1 434 53.7
AUR62006082 Chenopodium quinoa HOM05D002306 ORTHO05D005773 1.4e-119 434.1 417 57.3
Ah.13g070360 Amaranthus hybridus HOM05D002306 ORTHO05D005773 4.0e-119 432.6 417 56.1
AUR62019412 Chenopodium quinoa HOM05D002306 ORTHO05D005773 6.9e-119 431.8 412 56.3
Lsat_1_v5_gn_2_136261 Lactuca sativa HOM05D002306 ORTHO05D005773 4.9e-117 425.6 456 50.7
Zm00001eb294430 Zea mays HOM05D002306 ORTHO05D005773 2.3e-114 416.8 484 49.4
HPP92_010499 Vanilla planifolia HOM05D002306 ORTHO05D005773 8.7e-114 414.8 485 48.0
Sed0009393 Sechium edule HOM05D002306 ORTHO05D005773 3.3e-113 412.9 386 59.8
Lj3C903G6 Lonicera japonica HOM05D002306 ORTHO05D005773 9.3e-108 394.8 348 58.9
Zm00001eb342430 Zea mays HOM05D002306 ORTHO05D005773 8.2e-104 381.7 460 47.6
unitig_748.g7291 Utricularia gibba HOM05D002306 ORTHO05D005773 3.2e-100 369.8 383 53.0
Mapoly0155s0003 Marchantia polymorpha HOM05D002306 ORTHO05D005773 6.3e-88 328.9 448 40.8
CBR_g39074 Chara braunii HOM05D002306 ORTHO05D005773 1.5e-81 307.8 414 42.0
COL.COLO4_16788 Corchorus olitorius HOM05D002306 ORTHO05D005773 2.0e-78 297.4 257 62.3
SHI02360 Sapria himalayana HOM05D002306 ORTHO05D005773 2.0e-78 297.4 378 45.8
AagrBONN_evm.TU.Sc2ySwM_228.3658 Anthoceros agrestis HOM05D002306 ORTHO05D005773 5.9e-78 295.8 379 44.1
Pp3c4_28770 Physcomitrium patens HOM05D002306 ORTHO05D005773 5.9e-78 295.8 390 41.0
CBR_g52250 Chara braunii HOM05D002306 ORTHO05D005773 1.7e-77 294.3 384 44.0
QL05p052295 Quercus lobata HOM05D002306 ORTHO05D005773 3.6e-75 286.6 233 61.4
SMO147G0069 Selaginella moellendorffii HOM05D002306 ORTHO05D005773 3.0e-66 256.9 350 42.6
MBI06_g36471_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 8.3e-64 248.8 316 48.1
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 2.1e-59 234.2 413 38.7
unitig_0.g2458 Utricularia gibba HOM05D000451 ORTHO05D000351 1.3e-56 224.9 357 40.1
Ciclev10023844m.g Citrus clementina HOM05D002306 ORTHO05D005773 2.0e-46 191.0 191 56.5
CDE03G0512 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 7.3e-44 182.6 178 51.1
Lsat_1_v5_gn_7_80100 Lactuca sativa HOM05D002306 ORTHO05D005773 2.3e-42 177.6 144 57.6
Cre11.g481250 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 2.8e-35 154.1 354 31.1
Cre02.g077451 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 2.1e-27 127.9 368 28.0
Lj3C903G5 Lonicera japonica HOM05D002306 ORTHO05D005773 8.1e-27 125.9 121 60.3
COL.COLO4_16789 Corchorus olitorius HOM05D002476 ORTHO05D002652 1.2e-25 122.1 121 57.9
Actinidia03176 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.7e-24 118.2 77 71.4
TPR.G40491 Trifolium pratense HOM05D002306 ORTHO05D005773 2.9e-24 117.5 61 88.5
CDE03G0170 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 1.1e-23 115.5 92 66.3
PRCOL_00002303 Prasinoderma coloniale HOM05D002306 ORTHO05D005773 9.2e-23 112.5 350 28.3
SEGI_37240 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 4.6e-22 110.2 62 79.0
SEGI_09966 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 4.4e-17 93.6 139 42.4
Lsat_1_v5_gn_5_184380 Lactuca sativa HOM05D000942 ORTHO05D014303 6.4e-16 89.7 76 59.2
SEGI_13792 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 4.2e-15 87.0 64 62.5
TAR629G2756 Trochodendron aralioides HOM05D002306 ORTHO05D005773 1.5e-12 78.6 69 59.4
Medtr5g071310 Medicago truncatula HOM05D000009 ORTHO05D000008 8.1e-11 72.8 126 38.1
Oeu053931.1 Olea europaea HOM05D002306 ORTHO05D005773 6.9e-10 69.7 115 36.5
Prupe.7G162400 Prunus persica HOM05D000363 ORTHO05D000236 7.6e-09 66.2 144 31.9
CDE08G0389 Ceratophyllum demersum HOM05D000363 ORTHO05D000236 4.9e-08 63.5 92 39.1
MD02G1138500 Malus domestica HOM05D000363 ORTHO05D000236 1.1e-07 62.4 144 29.9
Medtr5g070490 Medicago truncatula HOM05D000009 ORTHO05D000008 1.9e-07 61.6 94 40.4
SEGI_03713 Sequoiadendron giganteum HOM05D002306 ORTHO05D036569 1.9e-07 61.6 65 49.2
MD15G1252000 Malus domestica HOM05D000363 ORTHO05D000236 3.2e-07 60.8 144 29.2
Medtr5g071570 Medicago truncatula HOM05D000009 ORTHO05D000008 4.2e-07 60.5 102 36.3
FvH4_1g12460 Fragaria vesca HOM05D000363 ORTHO05D000236 1.2e-06 58.9 76 43.4
FAN19G0327 Fragaria x ananassa HOM05D000363 ORTHO05D000236 1.2e-06 58.9 76 43.4
Lsat_1_v5_gn_7_88240 Lactuca sativa HOM05D000942 ORTHO05D014303 1.6e-06 58.5 135 32.6
Cpa.g.sc6.184 Carica papaya HOM05D000363 ORTHO05D000236 2.7e-06 57.8 145 31.7
AagrBONN_evm.TU.Sc2ySwM_362.2317 Anthoceros agrestis HOM05D000363 ORTHO05D000236 3.5e-06 57.4 176 29.5
RcHm_v2.0_Chr2g0100321 Rosa chinensis HOM05D000363 ORTHO05D000236 4.6e-06 57.0 77 40.3
FAN23G1427 Fragaria x ananassa HOM05D000363 ORTHO05D000236 6.0e-06 56.6 76 42.1


User provided reference genes

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