Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 0.0e+00 1876.3 950 100.0
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 0.0e+00 1704.9 955 91.1
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 0.0e+00 1345.5 955 72.8
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 0.0e+00 1297.7 953 69.2
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 0.0e+00 1295.4 955 69.7
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1293.5 950 69.6
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 0.0e+00 1285.0 951 69.3
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 0.0e+00 1283.5 947 69.7
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 0.0e+00 1275.0 952 69.0
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 0.0e+00 1267.7 959 68.3
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 0.0e+00 1267.3 950 69.2
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1266.9 950 68.9
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1266.1 950 69.1
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 0.0e+00 1264.6 952 68.9
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1258.8 950 68.5
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 0.0e+00 1257.3 953 68.2
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 0.0e+00 1236.5 928 68.4
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 0.0e+00 1231.9 929 67.7
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 0.0e+00 1231.9 951 66.2
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 0.0e+00 1230.7 951 66.8
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1229.5 952 66.5
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1228.0 952 66.4
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 0.0e+00 1226.1 944 69.7
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 0.0e+00 1223.0 951 67.6
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 0.0e+00 1219.5 945 66.2
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 0.0e+00 1213.7 938 65.8
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 0.0e+00 1213.0 954 66.4
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 0.0e+00 1209.5 943 66.2
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 0.0e+00 1206.4 953 65.0
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 0.0e+00 1206.0 955 64.9
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 0.0e+00 1203.3 997 65.3
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 0.0e+00 1198.3 935 65.2
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 0.0e+00 1197.2 954 64.9
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 0.0e+00 1196.8 952 65.2
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 0.0e+00 1193.7 952 64.3
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 0.0e+00 1192.2 953 64.8
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 0.0e+00 1191.0 953 65.1
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 0.0e+00 1182.5 957 64.1
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 0.0e+00 1182.2 955 64.4
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 0.0e+00 1177.5 969 64.0
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 0.0e+00 1176.0 974 63.0
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 0.0e+00 1174.1 946 64.4
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 0.0e+00 1173.7 944 63.9
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1168.3 948 63.4
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1164.4 948 63.4
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 0.0e+00 1164.4 948 63.4
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 0.0e+00 1160.6 945 63.6
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 0.0e+00 1155.2 950 61.8
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 0.0e+00 1152.1 949 62.7
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 0.0e+00 1148.7 953 61.9
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 0.0e+00 1144.4 822 70.6
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 0.0e+00 1141.7 926 62.5
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 0.0e+00 1141.3 926 62.6
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 0.0e+00 1140.9 959 62.6
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 0.0e+00 1133.2 948 61.9
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 0.0e+00 1132.9 1006 60.2
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 0.0e+00 1126.7 948 61.1
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 0.0e+00 1125.9 945 61.6
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 0.0e+00 1121.7 954 60.8
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 0.0e+00 1110.1 947 60.3
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 0.0e+00 1108.6 944 60.6
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 0.0e+00 1102.0 947 58.2
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 0.0e+00 1099.3 864 66.4
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 0.0e+00 1097.0 957 58.7
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 0.0e+00 1096.3 947 59.7
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 0.0e+00 1096.3 948 59.8
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 0.0e+00 1095.5 921 61.0
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 0.0e+00 1095.1 956 58.9
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 0.0e+00 1093.6 958 59.1
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 0.0e+00 1087.4 944 60.1
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 0.0e+00 1085.5 950 59.3
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1080.5 955 59.2
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 6.5e-312 1074.7 952 58.2
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 7.8e-311 1070.5 925 60.4
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 1.7e-310 1069.3 933 60.9
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 2.6e-303 1045.4 954 57.0
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 4.5e-303 1044.6 952 56.6
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 2.9e-302 1042.0 918 59.2
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 1.9e-301 1039.3 929 59.4
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 9.3e-301 1036.9 921 58.1
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 1.3e-297 1026.5 765 69.0
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 3.8e-294 1015.0 817 63.6
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 1.5e-290 1003.0 950 56.8
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 1.1e-288 996.9 922 57.0
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 3.0e-283 978.8 745 68.9
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 1.2e-276 956.8 819 60.4
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 9.7e-274 947.2 945 53.9
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 5.3e-272 941.4 929 52.5
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 1.6e-252 876.7 691 64.7
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 2.1e-244 849.7 934 48.9
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 5.2e-243 845.1 845 56.4
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 2.5e-221 773.1 946 45.2
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 4.7e-204 715.7 667 56.2
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 2.9e-201 706.4 965 43.4
Os01g0890900 Oryza sativa ssp. japonica HOM05D004953 ORTHO05D006193 2.7e-191 673.3 861 43.4
Lalb_Chr03g0040541 Lupinus albus HOM05D004953 ORTHO05D006193 4.8e-188 662.5 479 66.0
SEGI_29467 Sequoiadendron giganteum HOM05D004953 ORTHO05D006193 8.2e-172 608.6 932 39.5
Glyma.09G246350 Glycine max HOM05D004953 ORTHO05D006193 3.2e-152 543.5 414 63.5
Zm00001eb145140 Zea mays HOM05D004953 ORTHO05D006193 7.7e-146 522.3 751 41.3
SMO201G0221 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 1.7e-145 521.2 881 37.1
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 9.7e-141 505.4 475 60.4
Actinidia33395 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.7e-140 504.6 402 64.2
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 5.4e-131 473.0 457 59.1
Pp3c2_410 Physcomitrium patens HOM05D004953 ORTHO05D006193 5.5e-128 463.0 885 34.2
Mapoly0032s0035 Marchantia polymorpha HOM05D004953 ORTHO05D006193 2.7e-127 460.7 924 32.0
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.1e-119 434.5 432 56.5
Actinidia12854 Actinidia chinensis HOM05D004953 ORTHO05D006193 8.6e-97 359.4 261 67.8
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.1e-88 332.4 433 46.2
FAN15G1853 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.9e-76 291.2 196 71.9
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 3.3e-48 198.0 347 39.8
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 4.8e-47 194.1 353 39.4
TPR.G1778 Trifolium pratense HOM05D004953 ORTHO05D019267 2.4e-46 191.8 468 32.5
Actinidia23343 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.0e-40 172.2 148 60.8
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.8e-39 168.3 345 35.4
FvH4_4g15200 Fragaria vesca HOM05D004953 ORTHO05D006193 1.1e-32 146.4 136 56.6
FvH4_3g38850 Fragaria vesca HOM05D004953 ORTHO05D006193 3.1e-30 138.3 118 66.9
Actinidia29995 Actinidia chinensis HOM05D004953 ORTHO05D006193 3.6e-26 124.8 237 37.6
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 1.0e-25 123.2 116 56.9
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.4e-22 112.8 122 50.8
MCO15G701 Micromonas commoda HOM05D004953 ORTHO05D006193 4.5e-21 107.8 909 22.2
FAN14G2572 Fragaria x ananassa HOM05D004953 ORTHO05D006193 5.9e-21 107.5 72 69.4
FvH4_6g27414 Fragaria vesca HOM05D004953 ORTHO05D006193 7.7e-21 107.1 72 69.4
TAR365G0721 Trochodendron aralioides HOM05D004953 ORTHO05D006193 1.3e-20 106.3 153 41.2
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 8.5e-20 103.6 72 66.7
FvH4_2g12761 Fragaria vesca HOM05D004953 ORTHO05D006193 1.1e-19 103.2 72 65.3
FvH4_6g36881 Fragaria vesca HOM05D004953 ORTHO05D006193 1.5e-19 102.8 72 66.7
FvH4_7g13151 Fragaria vesca HOM05D004953 ORTHO05D006193 2.7e-18 98.6 66 72.7
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 2.3e-17 95.5 124 45.2
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.1e-14 86.7 61 65.6
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.6e-13 82.8 61 63.9
Actinidia04704 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.7e-13 82.0 243 32.1
FvH4_4g15182 Fragaria vesca HOM05D004953 ORTHO05D006193 5.9e-13 80.9 46 80.4
FvH4_7g08382 Fragaria vesca HOM05D004953 ORTHO05D006193 1.0e-12 80.1 54 66.7
FAN14G1126 Fragaria x ananassa HOM05D004953 ORTHO05D006193 6.5e-12 77.4 54 66.7
FAN09G3899 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.5e-11 75.5 54 64.8
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 3.2e-11 75.1 94 40.4
SMO203G0202 Selaginella moellendorffii HOM05D003498 ORTHO05D006193 1.6e-10 72.8 68 50.0
SMO203G0177 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 4.0e-09 68.2 175 32.0
CSS0040358 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 8.3e-07 60.5 58 53.4
FAN14G1607 Fragaria x ananassa HOM05D004953 ORTHO05D006193 8.3e-07 60.5 72 59.7
TPR.G3742 Trifolium pratense HOM05D004953 ORTHO05D006193 1.4e-06 59.7 38 71.1
CSS0036997 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 3.1e-06 58.5 58 51.7
FAN24G1763 Fragaria x ananassa HOM05D004953 ORTHO05D006193 5.4e-06 57.8 38 71.1


User provided reference genes

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