Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 1.1e-217 759.6 381 100.0
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 8.0e-187 657.1 368 90.2
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 2.1e-163 579.3 367 79.3
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 2.6e-161 572.4 366 77.9
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.1e-159 567.0 361 79.5
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 2.4e-159 565.8 366 78.4
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 9.2e-159 563.9 366 78.1
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.6e-158 563.1 364 78.8
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 2.7e-158 562.4 360 78.3
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 6.0e-158 561.2 362 76.0
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 6.0e-158 561.2 364 78.8
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 7.8e-158 560.8 367 77.4
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 7.8e-158 560.8 360 77.8
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 1.7e-157 559.7 366 77.9
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 5.1e-157 558.1 360 76.9
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 8.7e-157 557.4 368 76.4
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 9.6e-156 553.9 364 77.5
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 2.4e-154 549.3 367 76.6
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 4.0e-154 548.5 367 76.0
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 5.3e-154 548.1 367 76.0
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 5.3e-154 548.1 367 76.0
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 6.9e-154 547.7 361 78.4
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 6.9e-154 547.7 368 75.3
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 7.6e-153 544.3 367 75.7
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 9.9e-153 543.9 367 74.7
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 3.8e-152 542.0 363 75.2
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 6.4e-152 541.2 354 78.2
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 6.4e-152 541.2 364 76.6
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 8.4e-152 540.8 362 74.9
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 1.2e-150 537.0 372 72.8
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.0e-149 533.9 341 79.2
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 3.9e-149 531.9 365 74.8
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 5.6e-148 528.1 366 73.2
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 2.1e-147 526.2 397 69.0
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 2.8e-147 525.8 339 79.4
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.1e-146 523.9 374 71.1
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 1.8e-146 523.1 373 72.1
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 5.3e-146 521.5 367 72.8
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 6.9e-146 521.2 363 73.0
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 3.4e-145 518.8 365 73.4
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 1.3e-144 516.9 368 71.7
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 1.3e-144 516.9 365 71.5
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 3.8e-144 515.4 363 71.1
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 1.1e-143 513.8 372 70.4
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.4e-143 513.5 365 71.2
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 2.4e-143 512.7 366 72.4
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 3.2e-143 512.3 339 75.8
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 3.2e-143 512.3 365 70.7
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 5.4e-143 511.5 367 70.6
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 9.3e-143 510.8 368 72.0
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 1.6e-142 510.0 363 71.6
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.6e-142 510.0 367 72.8
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.6e-142 510.0 363 72.7
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 2.1e-142 509.6 344 74.4
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 2.1e-142 509.6 369 70.7
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 2.7e-142 509.2 374 70.6
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 2.7e-142 509.2 383 68.7
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 4.6e-142 508.4 371 72.2
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 6.0e-142 508.1 344 75.3
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 2.3e-141 506.1 364 72.5
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 3.9e-141 505.4 369 70.7
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 1.9e-140 503.1 363 71.6
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 9.6e-140 500.7 328 78.0
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 1.6e-139 500.0 374 70.9
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 4.8e-139 498.4 363 70.2
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 6.2e-139 498.0 395 66.6
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 1.8e-138 496.5 368 70.4
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 3.1e-138 495.7 368 69.0
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 3.1e-138 495.7 338 74.6
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 5.3e-138 495.0 372 70.4
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 2.0e-137 493.0 341 71.6
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 3.4e-137 492.3 367 70.3
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 7.6e-137 491.1 347 71.8
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.2e-136 489.6 422 64.0
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 2.9e-136 489.2 366 69.4
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.1e-135 487.3 341 73.3
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.1e-135 487.3 347 71.8
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 3.2e-135 485.7 340 71.5
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.2e-135 485.7 361 70.1
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 4.2e-135 485.3 371 68.2
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 7.1e-135 484.6 340 71.5
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 6.0e-134 481.5 366 67.2
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.3e-133 480.3 340 72.4
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 1.8e-133 479.9 340 69.1
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 5.1e-133 478.4 362 68.0
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 6.7e-133 478.0 338 71.3
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 6.7e-133 478.0 374 66.8
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 1.9e-132 476.5 343 71.7
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 3.3e-132 475.7 340 70.6
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 1.6e-131 473.4 354 68.4
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 1.4e-130 470.3 341 71.0
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 2.4e-130 469.5 343 65.9
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 2.4e-130 469.5 364 65.7
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 2.4e-130 469.5 357 71.7
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 4.0e-130 468.8 334 69.5
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 4.0e-130 468.8 367 64.9
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 5.3e-130 468.4 364 65.1
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 5.3e-130 468.4 349 67.0
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.2e-129 467.2 323 74.0
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 2.0e-129 466.5 344 70.6
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 1.0e-128 464.2 355 68.2
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 1.3e-128 463.8 335 68.4
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 1.3e-128 463.8 334 68.0
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.3e-128 463.8 368 64.4
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 3.8e-128 462.2 334 68.3
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 6.5e-128 461.5 335 68.4
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 6.5e-128 461.5 335 68.7
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 2.5e-127 459.5 335 67.8
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 3.2e-127 459.1 335 67.8
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 2.1e-126 456.4 384 64.6
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 2.7e-126 456.1 339 69.9
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 4.6e-126 455.3 359 66.0
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.3e-125 453.8 360 66.4
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 3.9e-125 452.2 325 71.7
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 1.9e-124 449.9 361 66.2
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 4.3e-124 448.7 378 61.4
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 7.4e-124 448.0 352 66.8
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 8.2e-123 444.5 340 68.8
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 8.2e-123 444.5 286 79.7
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 1.5e-121 440.3 352 65.9
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 4.5e-121 438.7 378 60.3
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 5.0e-120 435.3 338 66.0
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 1.1e-119 434.1 272 80.9
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 5.5e-119 431.8 350 63.4
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 7.2e-119 431.4 334 65.9
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 4.6e-118 428.7 367 63.2
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 7.9e-118 427.9 338 63.6
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 4.3e-116 422.2 565 45.0
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 9.1e-114 414.5 284 77.1
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 1.1e-108 397.5 283 72.8
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 2.6e-100 369.8 337 57.9
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 1.6e-94 350.5 365 52.6
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 1.6e-94 350.5 345 54.2
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 1.2e-92 344.4 247 72.1
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.9e-88 329.7 206 81.6
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 4.2e-87 325.9 242 66.1
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 8.0e-86 321.6 295 59.7
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.3e-85 320.1 223 72.6
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 4.0e-85 319.3 320 52.8
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 1.3e-83 314.3 228 70.6
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 1.2e-81 307.8 218 74.3
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 4.7e-78 295.8 282 57.8
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.2e-73 281.2 187 74.9
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 4.7e-70 269.2 163 82.2
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 7.0e-66 255.4 370 41.9
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.6e-62 244.2 182 65.4
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 1.2e-57 228.0 229 55.0
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 2.7e-57 226.9 141 78.0
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.3e-56 224.6 176 64.2
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 2.3e-56 223.8 183 64.5
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 5.6e-55 219.2 177 64.4
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 1.3e-51 208.0 269 46.5
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 1.7e-51 207.6 328 42.4
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 1.5e-44 184.5 212 50.0
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 8.1e-38 162.2 130 67.7
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 4.3e-31 139.8 137 51.1
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.8e-29 134.4 318 32.7
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 6.0e-25 119.4 376 32.4
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 3.9e-24 116.7 193 38.9
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 3.3e-23 113.6 63 85.7
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 7.4e-23 112.5 69 73.9
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.0e-19 102.1 86 62.8
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 3.8e-19 100.1 204 34.8
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.0e-16 92.0 56 80.4
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 2.3e-16 90.9 91 53.8
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 8.7e-16 89.0 57 75.4
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 2.2e-11 74.3 75 49.3
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 8.4e-11 72.4 52 61.5
Gohir.D08G092932 Gossypium hirsutum HOM05D004315 ORTHO05D217518 6.1e-09 66.2 57 61.4
Cfa023540 Carpinus fangiana HOM05D000112 ORTHO05D001327 2.5e-07 60.8 35 74.3
VMungo1383G0961 Vigna mungo HOM05D001558 ORTHO05D005808 3.7e-06 57.0 50 54.0


User provided reference genes

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