Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0097400 Salix brachista HOM05D004412 ORTHO05D005316 1.3e-168 596.3 294 100.0
Potri.014G130900 Populus trichocarpa HOM05D004412 ORTHO05D005316 3.5e-129 465.3 289 80.6
Potri.002G205800 Populus trichocarpa HOM05D004412 ORTHO05D005316 7.0e-122 441.0 289 76.5
Manes.05G063600 Manihot esculenta HOM05D004412 ORTHO05D005316 8.5e-112 407.5 292 69.5
Duzib138G0322 Durio zibethinus HOM05D004412 ORTHO05D005316 1.0e-109 400.6 291 67.0
TAR362G0097 Trochodendron aralioides HOM05D004412 ORTHO05D005316 1.4e-109 400.2 291 67.0
Thecc.01G297900 Theobroma cacao HOM05D004412 ORTHO05D005316 1.8e-109 399.8 292 68.2
TWI14G0137 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 1.5e-108 396.7 291 66.7
Dinv19708 Davidia involucrata HOM05D004412 ORTHO05D005316 1.3e-107 393.7 291 66.7
Duzib211G0511 Durio zibethinus HOM05D004412 ORTHO05D005316 1.3e-107 393.7 293 65.9
Atru.chr5.1172 Acer truncatum HOM05D004412 ORTHO05D005316 2.8e-107 392.5 291 66.7
RcHm_v2.0_Chr6g0293711 Rosa chinensis HOM05D004412 ORTHO05D005316 3.7e-107 392.1 291 66.3
Gohir.A08G042700 Gossypium hirsutum HOM05D004412 ORTHO05D005316 4.9e-107 391.7 291 66.0
Lj2C1191G7 Lonicera japonica HOM05D004412 ORTHO05D005316 1.1e-106 390.6 293 67.2
GSVIVG01027984001 Vitis vinifera HOM05D004412 ORTHO05D005316 1.1e-106 390.6 296 66.2
Gohir.D08G052500 Gossypium hirsutum HOM05D004412 ORTHO05D005316 4.1e-106 388.7 291 66.0
TWI59G0713 Tripterygium wilfordii HOM05D004412 ORTHO05D005316 5.4e-106 388.3 291 66.0
COL.COLO4_23368 Corchorus olitorius HOM05D004412 ORTHO05D005316 2.7e-105 386.0 291 65.6
Hma1.2p1_0491F.1_g164430 Hydrangea macrophylla HOM05D004412 ORTHO05D005316 3.5e-105 385.6 293 66.2
Gorai.004G052600 Gossypium raimondii HOM05D004412 ORTHO05D005316 4.5e-105 385.2 291 65.6
TAR633G0484 Trochodendron aralioides HOM05D004412 ORTHO05D005316 7.7e-105 384.4 291 66.7
FvH4_2g25500 Fragaria vesca HOM05D004412 ORTHO05D005316 1.0e-104 384.0 292 64.4
Prupe.8G259100 Prunus persica HOM05D004412 ORTHO05D005316 1.0e-104 384.0 289 65.1
Ciclev10021279m.g Citrus clementina HOM05D004412 ORTHO05D005316 1.7e-104 383.3 303 64.0
vmacro02463 Vaccinium macrocarpon HOM05D004412 ORTHO05D005316 2.9e-104 382.5 291 65.6
MD03G1285900 Malus domestica HOM05D004412 ORTHO05D005316 3.8e-104 382.1 291 64.3
Cfa005939 Carpinus fangiana HOM05D004412 ORTHO05D005316 2.5e-103 379.4 292 65.1
Haze_04907 Corylus avellana HOM05D004412 ORTHO05D005316 3.3e-103 379.0 292 64.7
QL12p027258 Quercus lobata HOM05D004412 ORTHO05D005316 7.3e-103 377.9 292 64.7
MD11G1305700 Malus domestica HOM05D004412 ORTHO05D005316 1.2e-102 377.1 291 63.2
Rhsim13G0011700 Rhododendron simsii HOM05D004412 ORTHO05D005316 1.6e-102 376.7 286 66.4
FAN24G2667 Fragaria x ananassa HOM05D004412 ORTHO05D005316 2.1e-102 376.3 293 63.8
Gohir.D12G135400 Gossypium hirsutum HOM05D004412 ORTHO05D005316 2.1e-102 376.3 291 64.6
Manes.01G217400 Manihot esculenta HOM05D004412 ORTHO05D005316 3.6e-102 375.6 213 82.2
Gorai.008G146400 Gossypium raimondii HOM05D004412 ORTHO05D005316 1.4e-101 373.6 291 64.3
Glyma.03G213500 Glycine max HOM05D004412 ORTHO05D005316 8.9e-101 370.9 293 64.2
Medtr7g108680 Medicago truncatula HOM05D004412 ORTHO05D005316 1.2e-100 370.5 294 63.6
PGR119G0650 Punica granatum HOM05D004412 ORTHO05D005316 1.2e-100 370.5 292 64.0
Psat0s3188g0040 Pisum sativum HOM05D004412 ORTHO05D005316 9.8e-100 367.5 301 62.8
arahy.Tifrunner.gnm1.ann1.E95WBF Arachis hypogaea HOM05D004412 ORTHO05D005316 2.2e-99 366.3 291 64.6
AT1G02880 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 2.9e-99 365.9 289 62.6
Ca_09149_v3 Cicer arietinum L. HOM05D004412 ORTHO05D005316 2.9e-99 365.9 300 62.0
THA.LOC104825974 Tarenaya hassleriana HOM05D004412 ORTHO05D005316 4.9e-99 365.2 291 62.5
TPR.G9643 Trifolium pratense HOM05D004412 ORTHO05D005316 4.9e-99 365.2 289 63.0
arahy.Tifrunner.gnm1.ann1.K6REY5 Arachis hypogaea HOM05D004412 ORTHO05D005316 1.4e-98 363.6 291 64.3
CsaV3_7G029140 Cucumis sativus L. HOM05D004412 ORTHO05D005316 1.4e-98 363.6 301 62.1
CANSAT25G2200 Cannabis sativa HOM05D004412 ORTHO05D005316 4.1e-98 362.1 293 60.8
CANSAT25G3274 Cannabis sativa HOM05D004412 ORTHO05D005316 4.1e-98 362.1 293 60.8
Phvul.001G206100 Phaseolus vulgaris HOM05D004412 ORTHO05D005316 4.1e-98 362.1 293 62.8
DCAR_002821 Daucus carota HOM05D004412 ORTHO05D005316 3.5e-97 359.0 292 61.0
Glyma.19G210300 Glycine max HOM05D004412 ORTHO05D005316 4.6e-97 358.6 308 60.1
A10p01550 Brassica napus HOM05D000147 ORTHO05D001254 5.9e-97 358.2 288 61.8
BraA10t42430Z Brassica rapa HOM05D000147 ORTHO05D001254 7.8e-97 357.8 288 61.8
DCAR_005799 Daucus carota HOM05D004412 ORTHO05D005316 7.8e-97 357.8 291 61.9
PSO782G2310 Papaver somniferum HOM05D004412 ORTHO05D005316 1.0e-96 357.5 292 60.6
BcaC05g24629 Brassica carinata HOM05D004412 ORTHO05D005316 3.0e-96 355.9 288 61.8
C05p01550 Brassica napus HOM05D000147 ORTHO05D001254 3.0e-96 355.9 288 61.8
Cc04_g10720 Coffea canephora HOM05D004412 ORTHO05D005316 3.9e-96 355.5 297 59.9
Migut.D00201 Erythranthe guttata HOM05D004412 ORTHO05D005316 3.9e-96 355.5 291 61.5
PSO302G0109 Papaver somniferum HOM05D004412 ORTHO05D005316 3.9e-96 355.5 291 60.8
AL1G12300 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 5.0e-96 355.1 291 60.8
CDE05G1992 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 5.0e-96 355.1 292 61.0
CDE11G0241 Ceratophyllum demersum HOM05D004412 ORTHO05D005316 6.6e-96 354.8 292 60.3
Oeu032104.1 Olea europaea HOM05D004412 ORTHO05D005316 6.6e-96 354.8 297 61.6
Thhalv10008492m.g Eutrema salsugineum HOM05D004412 ORTHO05D005316 1.1e-95 354.0 291 61.5
PSO210G7114 Papaver somniferum HOM05D004412 ORTHO05D005316 1.1e-95 354.0 291 60.5
Lj1g0006783 Lotus japonicus HOM05D004412 ORTHO05D005316 1.9e-95 353.2 302 59.6
Sc05g0004150 Simmondsia chinensis HOM05D004412 ORTHO05D005316 2.5e-95 352.8 290 59.3
Carub.0001s0201 Capsella rubella HOM05D004412 ORTHO05D005316 4.3e-95 352.1 289 60.6
BolC5t28933H Brassica oleracea HOM05D004412 ORTHO05D005316 5.6e-95 351.7 291 61.2
Carub.0007s3652 Capsella rubella HOM05D004412 ORTHO05D005316 5.6e-95 351.7 289 60.6
HPP92_013717 Vanilla planifolia HOM05D004412 ORTHO05D005316 7.3e-95 351.3 291 59.8
BcaB03g15756 Brassica carinata HOM05D004412 ORTHO05D005316 9.5e-95 350.9 291 61.2
CAN.G339.23 Capsicum annuum HOM05D004412 ORTHO05D005316 9.5e-95 350.9 297 59.9
Sp1g01880 Schrenkiella parvula HOM05D004412 ORTHO05D005316 1.2e-94 350.5 291 60.5
Sabra02G0153500 Salix brachista HOM05D004412 ORTHO05D005316 1.6e-94 350.1 308 61.4
BcaB03g13500 Brassica carinata HOM05D004412 ORTHO05D005316 2.8e-94 349.4 289 60.6
arahy.Tifrunner.gnm1.ann1.TC9I43 Arachis hypogaea HOM05D004412 ORTHO05D005316 3.6e-94 349.0 289 60.6
BcaC07g36986 Brassica carinata HOM05D004412 ORTHO05D005316 3.6e-94 349.0 289 60.9
BcaC07g36988 Brassica carinata HOM05D004412 ORTHO05D005316 3.6e-94 349.0 289 60.9
Lalb_Chr18g0047081 Lupinus albus HOM05D004412 ORTHO05D005316 3.6e-94 349.0 300 59.7
Hund18137 Selenicereus undatus HOM05D004412 ORTHO05D005316 3.6e-94 349.0 294 59.5
arahy.Tifrunner.gnm1.ann1.V4DRNI Arachis hypogaea HOM05D004412 ORTHO05D005316 4.7e-94 348.6 289 60.6
A08p37550 Brassica napus HOM05D004412 ORTHO05D005316 8.0e-94 347.8 289 60.9
C08p00300 Brassica napus HOM05D004412 ORTHO05D005316 1.4e-93 347.1 289 60.6
Nn4g25831 Nelumbo nucifera HOM05D004412 ORTHO05D005316 1.4e-93 347.1 211 73.5
EL10Ac2g03462 Beta vulgaris HOM05D004412 ORTHO05D005316 1.8e-93 346.7 292 57.9
MSTRG.18165 Avicennia marina HOM05D004412 ORTHO05D005316 4.0e-93 345.5 291 61.9
CSS0010827 Camellia sinensis var. sinensis HOM05D004412 ORTHO05D005316 4.0e-93 345.5 269 66.2
ClCG09G005980 Citrullus lanatus HOM05D004412 ORTHO05D005316 4.0e-93 345.5 214 73.8
ATR0693G457 Amborella trichopoda HOM05D004412 ORTHO05D005316 5.2e-93 345.1 291 58.4
Eucgr.H01156 Eucalyptus grandis HOM05D004412 ORTHO05D005316 5.2e-93 345.1 300 59.0
ECA247G0114 Erigeron canadensis HOM05D004412 ORTHO05D005316 6.8e-93 344.7 295 58.6
Aa31LG1G9690 Aethionema arabicum HOM05D004412 ORTHO05D005316 8.9e-93 344.4 292 59.2
AT2G44750 Arabidopsis thaliana HOM05D004412 ORTHO05D005316 2.0e-92 343.2 289 59.5
BolC8t46831H Brassica oleracea HOM05D004412 ORTHO05D005316 5.8e-92 341.7 292 59.9
HanXRQChr15g0465781 Helianthus annuus HOM05D004412 ORTHO05D005316 9.8e-92 340.9 287 60.6
Lsat_1_v5_gn_9_901 Lactuca sativa HOM05D004412 ORTHO05D005316 1.3e-91 340.5 294 59.2
Aqoxy5G00729 Aquilegia oxysepala HOM05D004412 ORTHO05D005316 4.9e-91 338.6 211 74.9
HanXRQChr10g0284561 Helianthus annuus HOM05D004412 ORTHO05D005316 2.4e-90 336.3 293 58.7
Sopen09g029800 Solanum pennellii HOM05D004412 ORTHO05D005316 1.6e-89 333.6 291 58.4
AUR62008659 Chenopodium quinoa HOM05D004412 ORTHO05D005316 2.7e-89 332.8 289 57.1
Solyc09g074970.3 Solanum lycopersicum HOM05D004412 ORTHO05D005316 2.7e-89 332.8 293 58.7
AUR62033109 Chenopodium quinoa HOM05D000147 ORTHO05D001254 6.0e-89 331.6 289 56.4
Os01g0356500 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 6.0e-89 331.6 292 56.2
Peaxi162Scf00001g04911 Petunia axillaris HOM05D004412 ORTHO05D005316 6.0e-89 331.6 297 57.6
PGSC0003DMG401011372 Solanum tuberosum HOM05D004412 ORTHO05D005316 3.0e-88 329.3 291 57.4
Zm00001eb142350 Zea mays HOM05D004412 ORTHO05D005316 8.6e-88 327.8 296 55.7
CiPaw.07G106900 Carya illinoinensis HOM05D004412 ORTHO05D005316 1.5e-87 327.0 194 77.8
PSO832G3509 Papaver somniferum HOM05D004412 ORTHO05D005316 2.5e-87 326.2 289 55.4
QL12p026683 Quercus lobata HOM05D004412 ORTHO05D005316 4.3e-87 325.5 272 62.1
Duzib211G0323 Durio zibethinus HOM05D004412 ORTHO05D005316 9.5e-87 324.3 194 77.3
Hund05414 Selenicereus undatus HOM05D004412 ORTHO05D005316 3.6e-86 322.4 214 68.7
Os05g0367400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 6.2e-86 321.6 294 55.8
SGA_v2.0_scaffold2G01402 Striga asiatica HOM05D002199 ORTHO05D007829 1.5e-84 317.0 290 56.9
SalBow3G3296 Salvia bowleyana HOM05D002199 ORTHO05D007829 2.0e-84 316.6 213 69.0
Gohir.A12G131600 Gossypium hirsutum HOM05D004412 ORTHO05D005316 4.9e-83 312.0 194 74.7
SGA_v2.0_scaffold1G00376 Striga asiatica HOM05D004412 ORTHO05D005316 2.4e-82 309.7 290 56.2
Zm00001eb131550 Zea mays HOM05D004412 ORTHO05D005316 7.1e-82 308.1 307 50.8
BraA08t35652Z Brassica rapa HOM05D004412 ORTHO05D005316 2.7e-81 306.2 293 56.3
Sed0017881 Sechium edule HOM05D004412 ORTHO05D005316 5.1e-80 302.0 191 71.7
MELO3C016014.2 Cucumis melo HOM05D004412 ORTHO05D005316 1.1e-79 300.8 194 73.7
Medtr8g058563 Medicago truncatula HOM05D004412 ORTHO05D005316 2.8e-78 296.2 182 76.4
Actinidia32228 Actinidia chinensis HOM05D004412 ORTHO05D005316 6.2e-78 295.0 198 70.2
Zm00001eb285500 Zea mays HOM05D004412 ORTHO05D005316 1.8e-77 293.5 279 54.8
Dinv33040 Davidia involucrata HOM05D004412 ORTHO05D005316 1.2e-76 290.8 169 80.5
CARHR002230 Cardamine hirsuta HOM05D004412 ORTHO05D005316 7.8e-73 278.1 289 52.2
MBI19_g12143_MAGBIO Magnolia biondii HOM05D004412 ORTHO05D005316 2.3e-72 276.6 324 50.9
Pp3c4_27720 Physcomitrium patens HOM05D004412 ORTHO05D005316 2.3e-72 276.6 267 51.7
Pp3c26_15150 Physcomitrium patens HOM05D004412 ORTHO05D005316 3.3e-71 272.7 276 50.4
PGR119G0381 Punica granatum HOM05D004412 ORTHO05D005316 7.3e-71 271.6 260 56.5
AagrBONN_evm.TU.Sc2ySwM_362.2756 Anthoceros agrestis HOM05D004412 ORTHO05D005316 4.4e-68 262.3 285 46.7
SEGI_10498 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 1.3e-59 234.2 187 58.8
Nitab4.5_0005515g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.7e-59 233.8 395 38.7
Mapoly0113s0040 Marchantia polymorpha HOM05D004412 ORTHO05D005316 3.8e-59 232.6 294 43.5
unitig_0.g656 Utricularia gibba HOM05D004412 ORTHO05D005316 1.1e-55 221.1 218 53.7
SHI29035 Sapria himalayana HOM05D004412 ORTHO05D005316 2.5e-55 219.9 209 53.6
SMO304G0134 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.5e-52 209.1 179 55.3
Nitab4.5_0002469g0010 Nicotiana tabacum HOM05D004412 ORTHO05D005316 7.6e-52 208.4 304 44.4
SMO119G0015 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.6e-49 199.1 269 42.4
CBR_g34735 Chara braunii HOM05D004412 ORTHO05D000002 7.9e-49 198.4 178 53.4
Nitab4.5_0001756g0180 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.6e-41 172.6 160 56.2
Carub.0033s0005 Capsella rubella HOM05D004412 ORTHO05D005316 1.0e-40 171.4 170 52.4
Lj1g0003703 Lotus japonicus HOM05D004412 ORTHO05D005316 3.0e-40 169.9 183 50.3
Nitab4.5_0000619g0170 Nicotiana tabacum HOM05D004412 ORTHO05D005316 4.8e-38 162.5 162 53.7
MCO04G072 Micromonas commoda HOM05D004412 ORTHO05D005316 1.2e-33 147.9 227 35.2
Nitab4.5_0001756g0260 Nicotiana tabacum HOM05D004412 ORTHO05D005316 1.8e-32 144.1 103 66.0
Cc01_g20710 Coffea canephora HOM05D004412 ORTHO05D005316 8.7e-32 141.7 95 65.3
Cre01.g040050 Chlamydomonas reinhardtii HOM05D004412 ORTHO05D005316 1.9e-31 140.6 290 33.8
Nitab4.5_0001756g0250 Nicotiana tabacum HOM05D004412 ORTHO05D005316 5.3e-29 132.5 81 71.6
MD11G1034700 Malus domestica HOM05D004412 ORTHO05D005316 2.2e-27 127.1 172 45.3
PRCOL_00001679 Prasinoderma coloniale HOM05D004412 ORTHO05D005316 1.4e-26 124.4 227 34.4
SMO304G0108 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 3.9e-24 116.3 187 37.4
SMO304G0017 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 4.5e-20 102.8 145 40.7
FAN16G1537 Fragaria x ananassa HOM05D004412 ORTHO05D005316 6.5e-19 99.0 60 75.0
SEGI_14482 Sequoiadendron giganteum HOM05D004412 ORTHO05D005316 8.5e-19 98.6 136 41.9
MD02G1044100 Malus domestica HOM05D004412 ORTHO05D005316 2.3e-16 90.5 52 80.8
MD06G1023300 Malus domestica HOM05D004412 ORTHO05D005316 2.3e-16 90.5 52 80.8
SHI29034 Sapria himalayana HOM05D000105 ORTHO05D000023 2.6e-15 87.0 114 43.9
BcaC05g24583 Brassica carinata HOM05D004412 ORTHO05D005316 2.2e-14 84.0 55 69.1
SMO304G0077 Selaginella moellendorffii HOM05D004412 ORTHO05D005316 6.5e-11 72.4 98 39.8
Os01g0931400 Oryza sativa ssp. japonica HOM05D004412 ORTHO05D005316 1.2e-09 68.2 119 41.2
BcaB01g01260 Brassica carinata HOM05D004412 ORTHO05D093464 3.6e-09 66.6 51 60.8
MD02G1044000 Malus domestica HOM05D004412 ORTHO05D005316 1.8e-08 64.3 44 63.6
MD06G1023200 Malus domestica HOM05D004412 ORTHO05D005316 1.8e-08 64.3 44 63.6
Duzib133G1297 Durio zibethinus HOM05D004412 ORTHO05D005316 2.0e-07 60.8 36 69.4
Nn1g04358 Nelumbo nucifera HOM05D004412 ORTHO05D005316 4.4e-07 59.7 48 50.0
FAN05G3835 Fragaria x ananassa HOM05D025046 ORTHO05D205720 1.7e-06 57.8 51 54.9
AL4G43830 Arabidopsis lyrata HOM05D004412 ORTHO05D005316 3.7e-06 56.6 36 72.2


User provided reference genes

Program Settings