Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0061500 Salix brachista HOM05D005648 ORTHO05D007357 1.3e-236 822.8 433 100.0
Potri.014G084800 Populus trichocarpa HOM05D005648 ORTHO05D007357 3.6e-191 671.8 433 85.9
Potri.002G160100 Populus trichocarpa HOM05D005648 ORTHO05D007357 4.7e-175 618.2 433 78.8
Manes.01G256501 Manihot esculenta HOM05D005648 ORTHO05D007357 5.4e-131 471.9 437 61.8
Manes.05G034000 Manihot esculenta HOM05D005648 ORTHO05D007357 3.4e-125 452.6 433 61.9
QL08p048767 Quercus lobata HOM05D005648 ORTHO05D007357 1.2e-117 427.6 433 58.4
Duzib133G0061 Durio zibethinus HOM05D005648 ORTHO05D007357 3.4e-117 426.0 434 58.8
Thecc.01G358800 Theobroma cacao HOM05D005648 ORTHO05D007357 1.1e-115 421.0 434 57.4
Prupe.2G170800 Prunus persica HOM05D005648 ORTHO05D007357 1.5e-112 410.6 438 55.7
Gohir.A08G131300 Gossypium hirsutum HOM05D005648 ORTHO05D007357 5.3e-110 402.1 434 55.3
Gorai.004G158700 Gossypium raimondii HOM05D005648 ORTHO05D007357 2.6e-109 399.8 434 55.1
COL.COLO4_12714 Corchorus olitorius HOM05D005648 ORTHO05D007357 7.6e-109 398.3 397 58.9
TWI23G0553 Tripterygium wilfordii HOM05D005648 ORTHO05D007357 8.7e-105 384.8 435 54.9
MD01G1061000 Malus domestica HOM05D005648 ORTHO05D007357 3.7e-103 379.4 437 53.1
FvH4_7g14300 Fragaria vesca HOM05D005648 ORTHO05D007357 2.6e-101 373.2 481 51.4
FAN06G4900 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.4e-101 372.9 481 51.1
RcHm_v2.0_Chr1g0355291 Rosa chinensis HOM05D005648 ORTHO05D007357 8.5e-100 368.2 476 49.6
Haze_07444 Corylus avellana HOM05D005648 ORTHO05D007357 1.4e-99 367.5 409 53.3
Gohir.D08G152800 Gossypium hirsutum HOM05D005648 ORTHO05D007357 5.5e-99 365.5 398 54.3
Dinv32486 Davidia involucrata HOM05D005648 ORTHO05D007357 3.9e-97 359.4 432 51.2
FAN06G1011 Fragaria x ananassa HOM05D005648 ORTHO05D007357 1.3e-95 354.4 472 50.4
FAN10G1032 Fragaria x ananassa HOM05D005648 ORTHO05D007357 2.8e-95 353.2 470 50.4
Dinv43819 Davidia involucrata HOM05D005648 ORTHO05D007357 2.6e-93 346.7 440 49.3
FAN01G1827 Fragaria x ananassa HOM05D005648 ORTHO05D007357 4.5e-93 345.9 468 49.8
Oeu010615.1 Olea europaea HOM05D005648 ORTHO05D007357 7.7e-93 345.1 447 49.7
TAR375G0141 Trochodendron aralioides HOM05D005648 ORTHO05D007357 2.2e-92 343.6 442 51.1
CiPaw.11G030900 Carya illinoinensis HOM05D005648 ORTHO05D007357 3.8e-92 342.8 433 51.0
GSVIVG01026935001 Vitis vinifera HOM05D005648 ORTHO05D007357 5.0e-92 342.4 434 49.3
Sed0027842 Sechium edule HOM05D005648 ORTHO05D007357 1.4e-91 340.9 440 47.7
Atru.chr5.500 Acer truncatum HOM05D005648 ORTHO05D007357 1.4e-89 334.3 367 54.2
MD07G1136800 Malus domestica HOM05D005648 ORTHO05D007357 1.5e-88 330.9 416 50.2
Rhsim01G0157500 Rhododendron simsii HOM05D005648 ORTHO05D007357 5.7e-88 328.9 407 49.9
MSTRG.20835 Avicennia marina HOM05D005648 ORTHO05D007357 1.1e-86 324.7 445 48.8
Migut.B01757 Erythranthe guttata HOM05D005648 ORTHO05D007357 2.2e-84 317.0 446 47.1
PGR031G0771 Punica granatum HOM05D005648 ORTHO05D007357 1.6e-82 310.8 445 46.5
Lj3g0021061 Lotus japonicus HOM05D005648 ORTHO05D007357 1.4e-81 307.8 437 49.7
THA.LOC104825838 Tarenaya hassleriana HOM05D005648 ORTHO05D007357 3.0e-81 306.6 453 45.3
Aqoxy7G00304 Aquilegia oxysepala HOM05D005648 ORTHO05D007357 1.5e-80 304.3 443 46.0
Carub.0001s0053 Capsella rubella HOM05D005648 ORTHO05D007357 7.4e-80 302.0 467 44.3
Glyma.07G070400 Glycine max HOM05D005648 ORTHO05D007357 4.1e-78 296.2 431 47.6
Thhalv10007771m.g Eutrema salsugineum HOM05D005648 ORTHO05D007357 7.0e-78 295.4 442 44.8
Cpa.g.sc11.6 Carica papaya HOM05D005648 ORTHO05D007357 9.1e-78 295.0 275 60.4
Aa31LG1G11030 Aethionema arabicum HOM05D005648 ORTHO05D007357 1.6e-77 294.3 451 43.0
Cfa019074 Carpinus fangiana HOM05D005648 ORTHO05D007357 3.5e-77 293.1 372 48.7
Lsat_1_v5_gn_4_36080 Lactuca sativa HOM05D005648 ORTHO05D007357 7.7e-77 292.0 455 44.2
TAR629G3222 Trochodendron aralioides HOM05D005648 ORTHO05D007357 1.0e-76 291.6 338 54.4
Sp1g00620 Schrenkiella parvula HOM05D005648 ORTHO05D007357 5.0e-76 289.3 434 44.2
AL1G10680 Arabidopsis lyrata HOM05D005648 ORTHO05D007357 4.2e-75 286.2 477 43.4
AT1G01690 Arabidopsis thaliana HOM05D005648 ORTHO05D007357 4.7e-74 282.7 469 43.5
Peaxi162Scf00020g00424 Petunia axillaris HOM05D005648 ORTHO05D007357 6.1e-74 282.3 495 41.6
Rhsim01G0157000 Rhododendron simsii HOM05D005648 ORTHO05D007357 6.1e-74 282.3 412 43.7
DCAR_006931 Daucus carota HOM05D005648 ORTHO05D007357 3.0e-73 280.0 449 44.3
ECA234G0615 Erigeron canadensis HOM05D005648 ORTHO05D007357 6.8e-73 278.9 431 42.9
VMungo0331G0956 Vigna mungo HOM05D005648 ORTHO05D007357 2.0e-72 277.3 446 44.6
Ciclev10024354m.g Citrus clementina HOM05D005648 ORTHO05D007357 8.3e-71 271.9 267 60.7
CAN.G78.81 Capsicum annuum HOM05D005648 ORTHO05D007357 5.4e-70 269.2 446 41.9
CARHR000670 Cardamine hirsuta HOM05D005648 ORTHO05D007357 7.0e-70 268.9 471 42.3
Nn1g01539 Nelumbo nucifera HOM05D005648 ORTHO05D007357 1.6e-69 267.7 425 43.1
Lalb_Chr17g0339581 Lupinus albus HOM05D005648 ORTHO05D007357 1.0e-68 265.0 412 45.6
Cc02_g38050 Coffea canephora HOM05D005648 ORTHO05D007357 1.7e-68 264.2 436 42.9
AUR62004360 Chenopodium quinoa HOM05D005648 ORTHO05D007357 1.9e-67 260.8 425 43.5
Solyc01g094650.4 Solanum lycopersicum HOM05D005648 ORTHO05D007357 2.5e-67 260.4 484 39.3
Eucgr.D02293 Eucalyptus grandis HOM05D005648 ORTHO05D007357 1.2e-66 258.1 262 54.2
Glyma.03G008900 Glycine max HOM05D005648 ORTHO05D007357 1.6e-66 257.7 410 45.1
Actinidia33418 Actinidia chinensis HOM05D005648 ORTHO05D007357 6.1e-66 255.8 359 46.5
Nitab4.5_0006762g0020 Nicotiana tabacum HOM05D005648 ORTHO05D007357 6.1e-66 255.8 435 41.8
HanXRQChr16g0522761 Helianthus annuus HOM05D005648 ORTHO05D007357 1.4e-65 254.6 406 43.1
BolC7t43677H Brassica oleracea HOM05D005648 ORTHO05D007357 3.0e-65 253.4 485 38.4
FAN03G1082 Fragaria x ananassa HOM05D005648 ORTHO05D007357 4.0e-65 253.1 222 66.2
Sopen01g038460 Solanum pennellii HOM05D005648 ORTHO05D007357 2.0e-64 250.8 484 38.6
SGA_v2.0_scaffold4G02313 Striga asiatica HOM05D005648 ORTHO05D007357 3.4e-64 250.0 407 43.0
Phvul.010G099300 Phaseolus vulgaris HOM05D005648 ORTHO05D007357 7.5e-64 248.8 443 43.3
BcaC06g34230 Brassica carinata HOM05D005648 ORTHO05D007357 9.8e-64 248.4 483 38.1
MBI18_g45368_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.7e-63 247.7 277 54.2
Sc23g0002870 Simmondsia chinensis HOM05D005648 ORTHO05D007357 1.7e-63 247.7 438 42.0
arahy.Tifrunner.gnm1.ann1.B5LD0B Arachis hypogaea HOM05D005648 ORTHO05D007357 2.2e-63 247.3 428 42.8
Duzib133G1405 Durio zibethinus HOM05D005648 ORTHO05D007357 2.2e-63 247.3 241 58.9
Actinidia12702 Actinidia chinensis HOM05D005648 ORTHO05D007357 2.8e-63 246.9 274 53.3
A06p44840 Brassica napus HOM05D005648 ORTHO05D007357 7.0e-62 242.3 437 40.7
C07p31360 Brassica napus HOM05D005648 ORTHO05D008650 5.9e-61 239.2 453 38.2
ATR0680G381 Amborella trichopoda HOM05D005648 ORTHO05D007357 5.0e-60 236.1 440 39.1
BraA06t27356Z Brassica rapa HOM05D005648 ORTHO05D007357 7.2e-59 232.3 449 38.8
Psat4g155800 Pisum sativum HOM05D005648 ORTHO05D007357 4.7e-58 229.6 374 45.5
Peaxi162Scf00020g00041 Petunia axillaris HOM05D005648 ORTHO05D007357 1.0e-57 228.4 420 40.5
BraA10t42311Z Brassica rapa HOM05D005648 ORTHO05D007357 1.8e-57 227.6 443 39.7
Medtr8g030730 Medicago truncatula HOM05D005648 ORTHO05D007357 3.0e-57 226.9 420 43.8
EL10Ac7g16797 Beta vulgaris HOM05D005648 ORTHO05D007357 6.8e-57 225.7 427 38.6
MELO3C006108.2 Cucumis melo HOM05D005648 ORTHO05D007357 9.8e-56 221.9 267 47.9
A10p00320 Brassica napus HOM05D003351 ORTHO05D003806 1.3e-55 221.5 426 38.7
CsaV3_3G008890 Cucumis sativus L. HOM05D003539 ORTHO05D004111 4.9e-55 219.5 400 38.2
BolC5t28826H Brassica oleracea HOM05D005648 ORTHO05D007357 1.1e-54 218.4 443 38.1
arahy.Tifrunner.gnm1.ann1.SJPY5G Arachis hypogaea HOM05D005648 ORTHO05D007357 1.8e-54 217.6 245 55.9
ClCG05G001510 Citrullus lanatus HOM05D005648 ORTHO05D007357 1.8e-54 217.6 422 36.7
Lalb_Chr10g0096911 Lupinus albus HOM05D005648 ORTHO05D007357 1.6e-53 214.5 285 50.2
TPR.G10304 Trifolium pratense HOM05D005648 ORTHO05D007357 7.8e-53 212.2 399 41.6
HPP92_008491 Vanilla planifolia HOM05D005648 ORTHO05D007357 1.7e-52 211.1 445 36.2
PSO478G0111 Papaver somniferum HOM05D005648 ORTHO05D007357 3.9e-52 209.9 443 37.0
C05p00330 Brassica napus HOM05D003351 ORTHO05D003806 8.6e-52 208.8 429 37.3
CDE04G3514 Ceratophyllum demersum HOM05D005648 ORTHO05D007357 2.5e-51 207.2 454 37.0
MBI18_g44363_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 5.6e-51 206.1 260 49.6
Ca_23631_v3 Cicer arietinum L. HOM05D005648 ORTHO05D007357 3.6e-50 203.4 487 36.3
Nitab4.5_0000583g0110 Nicotiana tabacum HOM05D005648 ORTHO05D007357 1.7e-47 194.5 384 38.8
arahy.Tifrunner.gnm1.ann1.79VNNQ Arachis hypogaea HOM05D005648 ORTHO05D007357 2.4e-46 190.7 337 42.7
BcaC06g31348 Brassica carinata HOM05D005648 ORTHO05D007357 2.4e-46 190.7 478 35.4
SHI13451 Sapria himalayana HOM05D005648 ORTHO05D007357 3.2e-46 190.3 272 45.2
CSS0007131 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 6.8e-41 172.6 353 36.0
PGSC0003DMG400000173 Solanum tuberosum HOM05D005648 ORTHO05D007357 8.9e-41 172.2 205 52.7
Ah.05g180590 Amaranthus hybridus HOM05D005648 ORTHO05D007357 9.2e-38 162.2 459 33.3
AUR62022570 Chenopodium quinoa HOM05D005648 ORTHO05D007357 1.9e-35 154.5 343 34.4
Zm00001eb404350 Zea mays HOM05D005648 ORTHO05D007357 1.2e-34 151.8 313 37.4
Zm00001eb000540 Zea mays HOM05D005648 ORTHO05D007357 5.2e-33 146.4 310 37.4
vmacro20940 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 2.6e-32 144.1 154 58.4
QL08p048682 Quercus lobata HOM05D005648 ORTHO05D007357 4.9e-31 139.8 115 62.6
Sabra02G0127100 Salix brachista HOM05D005648 ORTHO05D007357 1.7e-28 131.3 148 53.4
unitig_26.g9738 Utricularia gibba HOM05D005648 ORTHO05D007357 3.6e-26 123.6 293 34.1
Os03g0106300 Oryza sativa ssp. japonica HOM05D005648 ORTHO05D007357 4.4e-24 116.7 257 38.5
MBI18_g40590_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 3.8e-23 113.6 254 36.2
MBI01_g12685_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D007357 1.2e-21 108.6 90 55.6
MBI06_g29680_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 1.6e-21 108.2 145 48.3
BcaB03g13607 Brassica carinata HOM05D003351 ORTHO05D003806 7.8e-21 105.9 434 29.3
CSS0016999 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.9e-19 101.3 81 70.4
arahy.Tifrunner.gnm1.ann1.QHU48Z Arachis hypogaea HOM05D005648 ORTHO05D007357 5.6e-19 99.8 114 52.6
SHI13452 Sapria himalayana HOM05D005648 ORTHO05D007357 7.3e-19 99.4 112 57.1
CSS0009989 Camellia sinensis var. sinensis HOM05D005648 ORTHO05D007357 1.3e-18 98.6 109 47.7
MBI18_g42710_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 3.1e-17 94.0 74 55.4
SalBow3G1978 Salvia bowleyana HOM05D005648 ORTHO05D007357 2.0e-16 91.3 83 66.3
FAN10G0802 Fragaria x ananassa HOM05D005648 ORTHO05D007357 3.4e-16 90.5 86 68.6
MBI17_g41096_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 2.4e-14 84.3 68 51.5
MBI06_g27427_MAGBIO Magnolia biondii HOM05D005648 ORTHO05D007357 4.2e-14 83.6 69 56.5
MBI19_g11759_MAGBIO Magnolia biondii HOM05D000532 ORTHO05D002414 1.3e-12 78.6 71 50.7
Eucgr.D02400 Eucalyptus grandis HOM05D005648 ORTHO05D029324 5.6e-11 73.2 126 38.1
vmacro20941 Vaccinium macrocarpon HOM05D005648 ORTHO05D007357 7.3e-11 72.8 127 40.2
Eucgr.D02411 Eucalyptus grandis HOM05D005648 ORTHO05D029324 1.3e-10 72.0 127 39.4
Ciclev10024524m.g Citrus clementina HOM05D005648 ORTHO05D007357 2.1e-10 71.2 77 51.9
MBI12_g03930_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D014274 9.3e-06 55.8 60 63.3


User provided reference genes

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