Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 0.0e+00 1544.3 800 100.0
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 0.0e+00 1468.4 799 94.9
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 0.0e+00 1161.0 815 75.0
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 0.0e+00 1126.3 781 74.4
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 0.0e+00 1118.6 819 71.4
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 0.0e+00 1109.4 824 70.9
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 0.0e+00 1103.2 817 70.6
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 0.0e+00 1100.9 790 72.3
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 0.0e+00 1099.0 822 70.4
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 0.0e+00 1097.8 819 69.8
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 0.0e+00 1097.4 817 70.5
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 0.0e+00 1087.4 791 71.6
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 0.0e+00 1086.6 818 69.9
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 0.0e+00 1083.2 821 69.9
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 0.0e+00 1078.9 819 69.4
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 0.0e+00 1076.6 819 69.7
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 1.1e-310 1069.7 818 68.5
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 1.2e-309 1066.2 818 68.3
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 1.3e-308 1062.8 815 68.0
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 3.3e-307 1058.1 820 68.3
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 3.3e-307 1058.1 799 69.3
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 2.1e-306 1055.4 810 68.3
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 4.7e-306 1054.3 831 67.1
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.1e-305 1053.1 796 68.1
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 7.6e-304 1047.0 810 67.4
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 3.5e-301 1038.1 815 67.9
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 1.3e-300 1036.2 819 66.9
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 4.3e-299 1031.2 815 67.1
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 9.6e-299 1030.0 815 67.4
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 6.9e-297 1023.8 815 67.1
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.5e-296 1022.7 815 67.0
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 2.2e-295 1018.8 817 66.1
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 3.2e-294 1015.0 810 65.3
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 1.6e-293 1012.7 827 66.4
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 2.1e-293 1012.3 864 63.7
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 1.3e-292 1009.6 810 64.3
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 5.1e-292 1007.7 817 65.7
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 5.6e-291 1004.2 817 64.1
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 5.8e-288 994.2 822 65.3
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 1.3e-287 993.0 817 62.7
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 5.4e-286 987.6 791 64.1
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 7.1e-286 987.3 823 65.1
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 2.1e-285 985.7 846 63.9
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 6.0e-285 984.2 817 62.5
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 1.8e-284 982.6 797 65.0
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 1.1e-283 979.9 815 63.9
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 3.3e-283 978.4 819 62.5
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 4.3e-283 978.0 729 70.4
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 9.6e-283 976.9 819 64.7
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 2.1e-282 975.7 823 65.1
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 3.7e-282 974.9 812 63.1
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 4.8e-282 974.5 825 62.3
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 6.2e-282 974.2 797 64.6
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 2.4e-281 972.2 812 63.5
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 2.0e-280 969.1 812 63.5
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 2.2e-279 965.7 823 63.8
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 3.8e-279 964.9 807 63.4
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 5.5e-278 961.1 827 63.7
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 7.1e-278 960.7 812 63.1
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 1.9e-275 952.6 822 63.0
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 5.6e-275 951.0 822 62.9
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 6.2e-274 947.6 810 62.8
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 8.2e-274 947.2 788 65.0
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 1.4e-273 946.4 812 62.6
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 1.2e-272 943.3 813 61.6
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 3.4e-272 941.8 821 62.4
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 2.2e-271 939.1 824 62.9
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 8.4e-271 937.2 811 61.5
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 1.9e-270 936.0 825 62.8
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 2.1e-269 932.6 812 61.1
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 2.7e-269 932.2 796 63.4
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 3.5e-269 931.8 811 61.9
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 1.8e-268 929.5 798 63.2
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 5.1e-268 927.9 829 60.2
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 1.3e-266 923.3 825 59.9
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 3.7e-266 921.8 827 60.1
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 4.8e-266 921.4 827 60.0
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 9.0e-265 917.1 828 59.9
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.0e-263 913.7 825 60.2
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 1.0e-263 913.7 826 60.7
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 1.0e-263 913.7 826 60.7
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 1.0e-263 913.7 826 60.7
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 5.0e-263 911.4 828 59.7
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.9e-262 909.4 828 59.5
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 3.2e-262 908.7 820 60.0
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 2.7e-261 905.6 820 59.9
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 3.6e-261 905.2 815 59.5
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 1.0e-260 903.7 822 61.6
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 1.3e-255 886.7 794 61.1
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 8.5e-255 884.0 806 58.8
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 1.3e-250 870.2 809 59.1
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 4.5e-248 861.7 824 57.5
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 8.8e-244 847.4 825 57.2
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 5.7e-235 818.1 816 55.8
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 1.5e-230 803.5 645 67.0
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.0e-212 742.7 651 61.4
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.0e-212 742.7 651 61.4
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 1.8e-204 716.8 783 52.7
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 2.3e-196 689.9 642 58.9
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 2.8e-181 639.8 477 69.6
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 1.3e-178 630.9 569 58.5
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 9.3e-177 624.8 841 46.1
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 3.4e-171 606.3 495 65.3
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 3.4e-171 606.3 494 66.4
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 1.9e-161 573.9 500 62.2
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 1.0e-159 568.2 463 64.4
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 1.0e-159 568.2 463 64.1
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 2.1e-157 560.5 484 62.6
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 2.1e-157 560.5 484 62.6
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 4.8e-157 559.3 472 62.1
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 4.8e-157 559.3 491 61.7
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 2.4e-156 557.0 490 60.6
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 5.3e-156 555.8 451 65.0
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 2.6e-155 553.5 799 44.3
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 4.5e-155 552.7 523 57.7
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 3.7e-149 533.1 457 62.6
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 3.1e-148 530.0 460 62.0
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 6.5e-146 522.3 476 60.1
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 1.9e-145 520.8 458 61.1
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 4.2e-145 519.6 452 61.3
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 9.4e-145 518.5 421 64.6
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 2.7e-144 516.9 476 59.5
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 4.3e-142 509.6 457 58.6
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 9.7e-142 508.4 462 60.8
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.0e-139 500.7 464 60.1
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 6.5e-138 495.7 643 50.5
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 8.5e-138 495.4 700 44.3
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 1.5e-134 484.6 760 40.1
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 9.7e-134 481.9 755 41.9
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 1.7e-133 481.1 470 55.7
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 2.2e-133 480.7 693 42.7
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 9.1e-132 475.3 461 56.6
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 1.9e-129 467.6 452 56.0
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 2.5e-129 467.2 452 56.2
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 5.5e-129 466.1 452 56.0
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 6.5e-122 442.6 455 53.8
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.8e-116 424.5 296 73.0
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 2.7e-115 420.6 461 52.1
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 8.9e-103 379.0 315 62.2
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 2.7e-91 340.9 470 43.0
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.1e-87 328.9 231 75.3
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 9.5e-81 305.8 256 64.5
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 1.5e-73 282.0 196 73.5
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 3.9e-66 257.3 359 43.2
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 1.1e-60 239.2 741 30.2
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 9.6e-57 226.1 147 76.9
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 1.1e-52 212.6 379 38.8
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 1.0e-50 206.1 139 72.7
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 4.3e-49 200.7 172 62.8
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 4.3e-49 200.7 172 62.8
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 2.6e-46 191.4 463 31.7
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 3.4e-46 191.0 146 64.4
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 9.0e-31 139.8 154 50.6
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 7.7e-30 136.7 154 49.4
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.4e-28 132.5 90 67.8
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 2.6e-22 111.7 97 57.7
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 4.2e-20 104.4 84 69.0
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 5.7e-17 94.0 70 62.9
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 3.2e-12 78.2 58 63.8
PRCOL_00004305 Prasinoderma coloniale HOM05D004452 ORTHO05D005358 1.8e-10 72.4 213 28.2


User provided reference genes

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