Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0010800 Salix brachista HOM05D001879 ORTHO05D007648 0.0e+00 2424.0 1255 100.0
Potri.014G017000 Populus trichocarpa HOM05D001879 ORTHO05D007648 0.0e+00 2174.1 1256 89.8
Manes.05G181200 Manihot esculenta HOM05D001879 ORTHO05D007648 0.0e+00 1593.2 1294 66.3
Cfa013681 Carpinus fangiana HOM05D001879 ORTHO05D007648 0.0e+00 1417.9 1312 60.2
QL12p037902 Quercus lobata HOM05D001879 ORTHO05D007648 0.0e+00 1354.7 1326 58.5
Dinv44962 Davidia involucrata HOM05D001879 ORTHO05D007648 0.0e+00 1336.6 1349 57.4
TWI56G1003 Tripterygium wilfordii HOM05D001879 ORTHO05D007648 0.0e+00 1304.3 1300 56.5
CiPaw.07G175900 Carya illinoinensis HOM05D001879 ORTHO05D007648 0.0e+00 1272.3 1218 58.5
CANSAT25G1585 Cannabis sativa HOM05D001879 ORTHO05D007648 0.0e+00 1221.5 1354 52.4
Haze_22324 Corylus avellana HOM05D001879 ORTHO05D007648 0.0e+00 1213.0 1260 55.6
Lj5g0015061 Lotus japonicus HOM05D001879 ORTHO05D007648 0.0e+00 1208.4 1297 54.4
Glyma.17G235900 Glycine max HOM05D001879 ORTHO05D007648 0.0e+00 1158.3 1335 51.9
Prupe.1G423900 Prunus persica HOM05D001879 ORTHO05D007648 0.0e+00 1151.7 1331 52.1
Nn5g30557 Nelumbo nucifera HOM05D001879 ORTHO05D007648 0.0e+00 1142.5 1355 49.9
TPR.G3779 Trifolium pratense HOM05D001879 ORTHO05D007648 0.0e+00 1141.7 1278 51.3
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 0.0e+00 1135.2 1321 50.3
Glyma.14G088600 Glycine max HOM05D001879 ORTHO05D007648 0.0e+00 1134.8 1326 51.7
TAR633G2582 Trochodendron aralioides HOM05D001879 ORTHO05D007648 0.0e+00 1134.4 1347 50.6
Medtr1g018350 Medicago truncatula HOM05D001879 ORTHO05D007648 0.0e+00 1132.5 1285 51.0
ClCG05G020550 Citrullus lanatus HOM05D001879 ORTHO05D007648 0.0e+00 1131.7 1393 48.7
VMungo0647G0280 Vigna mungo HOM05D001879 ORTHO05D007648 0.0e+00 1124.8 1346 50.9
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 0.0e+00 1115.5 1315 51.3
MD08G1086000 Malus domestica HOM05D001879 ORTHO05D007648 0.0e+00 1111.7 1277 51.1
Lj4A759T48 Lonicera japonica HOM05D001879 ORTHO05D007648 0.0e+00 1109.7 1365 49.5
CsaV3_4G034990 Cucumis sativus L. HOM05D001879 ORTHO05D007648 0.0e+00 1107.0 1323 50.3
arahy.Tifrunner.gnm1.ann1.6NC3R4 Arachis hypogaea HOM05D001879 ORTHO05D007648 0.0e+00 1098.6 1320 50.4
Phvul.001G026900 Phaseolus vulgaris HOM05D001879 ORTHO05D007648 0.0e+00 1097.8 1347 49.5
Sed0027780 Sechium edule HOM05D001879 ORTHO05D007648 0.0e+00 1097.4 1313 50.0
arahy.Tifrunner.gnm1.ann1.0QZG7W Arachis hypogaea HOM05D001879 ORTHO05D007648 0.0e+00 1091.3 1326 50.0
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 0.0e+00 1084.7 1273 50.7
Actinidia10192 Actinidia chinensis HOM05D001879 ORTHO05D007648 1.7e-310 1069.7 1349 49.3
Lalb_Chr24g0399421 Lupinus albus HOM05D001879 ORTHO05D007648 1.1e-309 1067.0 1323 49.2
Thecc.08G090000 Theobroma cacao HOM05D001879 ORTHO05D007648 9.4e-309 1063.9 1263 50.8
GSVIVG01009356001 Vitis vinifera HOM05D001879 ORTHO05D007648 1.6e-308 1063.1 1280 50.3
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 4.4e-306 1055.0 1311 49.7
FAN15G3244 Fragaria x ananassa HOM05D001879 ORTHO05D007648 4.1e-304 1048.5 1361 48.1
FAN27G0954 Fragaria x ananassa HOM05D001879 ORTHO05D007648 7.0e-304 1047.7 1325 48.5
Nitab4.5_0000164g0150 Nicotiana tabacum HOM05D001879 ORTHO05D007648 1.4e-301 1040.0 1358 46.5
FAN24G0874 Fragaria x ananassa HOM05D001879 ORTHO05D007648 2.1e-300 1036.2 1374 47.3
MSTRG.1026 Avicennia marina HOM05D001879 ORTHO05D007648 1.1e-296 1023.8 1303 48.6
Gohir.D05G212700 Gossypium hirsutum HOM05D001879 ORTHO05D007648 3.8e-294 1015.4 1328 48.4
Gorai.009G219200 Gossypium raimondii HOM05D001879 ORTHO05D007648 1.0e-291 1007.3 1275 48.7
DCAR_008854 Daucus carota HOM05D001879 ORTHO05D007648 6.8e-291 1004.6 1325 47.5
Gohir.A05G209500 Gossypium hirsutum HOM05D001879 ORTHO05D007648 2.0e-290 1003.0 1282 48.4
Psat6g016280 Pisum sativum HOM05D001879 ORTHO05D007648 1.8e-288 996.5 1210 49.8
Cc10_g05690 Coffea canephora HOM05D001879 ORTHO05D007648 1.6e-284 983.4 1317 46.8
Sopen04g031540 Solanum pennellii HOM05D001879 ORTHO05D007648 1.6e-284 983.4 1300 45.9
Nitab4.5_0003803g0020 Nicotiana tabacum HOM05D001879 ORTHO05D007648 2.2e-281 973.0 1357 45.0
Peaxi162Scf00081g01617 Petunia axillaris HOM05D001879 ORTHO05D007648 3.8e-278 962.2 1243 46.9
SalBow7G0276 Salvia bowleyana HOM05D001879 ORTHO05D007648 8.6e-278 961.1 1264 46.3
Eucgr.F02258 Eucalyptus grandis HOM05D001879 ORTHO05D007648 2.2e-273 946.4 1198 48.2
FAN20G0949 Fragaria x ananassa HOM05D001879 ORTHO05D007648 4.9e-273 945.3 1255 47.2
Aqoxy5G00884 Aquilegia oxysepala HOM05D001879 ORTHO05D007648 5.0e-262 908.7 1224 46.7
Oeu022102.3 Olea europaea HOM05D001879 ORTHO05D007648 1.2e-260 904.0 1247 47.1
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 8.0e-260 901.4 1258 46.5
SGA_v2.0_scaffold238G43965 Striga asiatica HOM05D001879 ORTHO05D007648 2.3e-259 899.8 1298 44.8
PSO017G6116 Papaver somniferum HOM05D001879 ORTHO05D007648 1.8e-251 873.6 1240 44.3
Solyc04g077940.4 Solanum lycopersicum HOM05D001879 ORTHO05D007648 1.6e-247 860.5 1257 43.1
CSS0015613 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007648 5.1e-238 828.9 927 53.0
RcHm_v2.0_Chr6g0309441 Rosa chinensis HOM05D001879 ORTHO05D007648 5.6e-237 825.5 1059 47.8
Rhsim07G0220800 Rhododendron simsii HOM05D001879 ORTHO05D007648 1.2e-234 817.8 1403 41.3
CDE06G0223 Ceratophyllum demersum HOM05D001879 ORTHO05D007648 7.9e-231 805.1 1366 39.5
Lalb_Chr22g0355581 Lupinus albus HOM05D001879 ORTHO05D007648 4.2e-224 782.7 929 48.8
Thhalv10006638m.g Eutrema salsugineum HOM05D001879 ORTHO05D007648 1.2e-223 781.2 1287 40.4
EL10Ac1g02391 Beta vulgaris HOM05D001879 ORTHO05D007648 7.4e-221 771.9 1325 40.5
AT1G27750 Arabidopsis thaliana HOM05D001879 ORTHO05D007648 1.0e-217 761.5 1287 39.3
BolC5t31365H Brassica oleracea HOM05D001879 ORTHO05D007648 8.4e-217 758.4 1278 40.1
Sp1g23980 Schrenkiella parvula HOM05D001879 ORTHO05D007648 3.9e-214 749.6 1289 40.7
AL1G41280 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 1.6e-212 744.2 1287 39.3
C05p26440 Brassica napus HOM05D001879 ORTHO05D007648 6.2e-212 742.3 1275 39.5
A09p38350 Brassica napus HOM05D001879 ORTHO05D007648 1.7e-209 734.2 1279 39.9
ECA247G3074 Erigeron canadensis HOM05D001879 ORTHO05D007648 3.8e-209 733.0 1250 39.8
FvH4_2g33220 Fragaria vesca HOM05D001879 ORTHO05D007648 6.5e-209 732.3 817 52.1
BraA09t39344Z Brassica rapa HOM05D001879 ORTHO05D007648 8.4e-209 731.9 1274 39.7
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 4.8e-204 716.1 1208 41.0
Carub.0001s2626 Capsella rubella HOM05D001879 ORTHO05D007648 8.5e-201 705.3 1266 39.3
ATR0208G021 Amborella trichopoda HOM05D001879 ORTHO05D007648 2.6e-194 683.7 1322 38.3
Sc15g0005720 Simmondsia chinensis HOM05D001879 ORTHO05D007648 7.7e-194 682.2 1276 39.3
Hund24034 Selenicereus undatus HOM05D001879 ORTHO05D007648 3.6e-191 673.3 1233 39.5
HanXRQChr08g0220641 Helianthus annuus HOM05D001879 ORTHO05D007648 7.9e-191 672.2 1265 37.2
Lsat_1_v5_gn_1_24340 Lactuca sativa HOM05D001879 ORTHO05D007648 3.9e-190 669.8 1272 37.6
HPP92_019611 Vanilla planifolia HOM05D001879 ORTHO05D007648 2.0e-186 657.5 1306 38.1
AUR62038814 Chenopodium quinoa HOM05D001879 ORTHO05D007648 4.1e-179 633.3 1188 36.9
Aa31sc113G20 Aethionema arabicum HOM05D001879 ORTHO05D007648 7.7e-178 629.0 1245 37.3
BcaC05g26775 Brassica carinata HOM05D001879 ORTHO05D007648 6.5e-177 625.9 1277 36.3
AUR62037434 Chenopodium quinoa HOM05D001879 ORTHO05D007648 1.6e-175 621.3 1222 36.0
Cpa.g.sc142.15 Carica papaya HOM05D001879 ORTHO05D007648 2.2e-172 610.9 673 52.3
Ca_13223_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 3.8e-161 573.5 667 52.6
SEGI_08589 Sequoiadendron giganteum HOM05D001879 ORTHO05D007648 6.4e-140 503.1 1407 32.1
CARHR027260 Cardamine hirsuta HOM05D001879 ORTHO05D007648 1.4e-139 501.9 948 37.3
SHI08394 Sapria himalayana HOM05D001879 ORTHO05D007648 3.4e-125 454.1 921 36.8
Cpa.g.sc142.16 Carica papaya HOM05D001879 ORTHO05D007648 2.2e-124 451.4 490 54.5
TAR381G0870 Trochodendron aralioides HOM05D001879 ORTHO05D007648 9.9e-117 426.0 547 47.9
Zm00001eb152180 Zea mays HOM05D001879 ORTHO05D007648 9.3e-107 392.9 1131 29.1
AagrBONN_evm.TU.Sc2ySwM_117.1790 Anthoceros agrestis HOM05D001879 ORTHO05D007648 7.7e-85 320.1 1496 25.7
Ca_13228_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.7e-84 318.9 347 52.7
SHI08393 Sapria himalayana HOM05D001879 ORTHO05D007648 6.7e-81 307.0 345 51.6
Os01g0765300 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 1.3e-79 302.8 733 32.6
Pp3c24_10810 Physcomitrium patens HOM05D001879 ORTHO05D007648 2.0e-77 295.4 1660 25.1
Ca_14462_v3 Cicer arietinum L. HOM05D001879 ORTHO05D000002 7.7e-77 293.5 434 44.2
Os01g0765200 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007648 2.3e-65 255.4 333 42.6
vmacro22059 Vaccinium macrocarpon HOM05D001879 ORTHO05D007648 4.4e-64 251.1 207 69.6
Mapoly0006s0231 Marchantia polymorpha HOM05D001879 ORTHO05D007648 1.7e-63 249.2 1398 26.8
Ca_22944_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007648 1.2e-53 216.5 430 37.0
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 1.2e-50 206.5 1248 24.7
RcHm_v2.0_Chr6g0309451 Rosa chinensis HOM05D001879 ORTHO05D007648 1.5e-43 183.0 105 79.0
CBR_g6612 Chara braunii HOM05D001879 ORTHO05D007648 2.5e-43 182.2 1767 22.6
Ca_20160_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 4.0e-41 174.9 221 45.2
Ca_09349_v3 Cicer arietinum L. HOM05D000083 ORTHO05D002968 4.0e-33 148.3 201 43.8
Psat0ss2518g0200 Pisum sativum HOM05D001879 ORTHO05D007648 9.2e-30 137.1 184 42.9
Duzib116G0273 Durio zibethinus HOM05D001879 ORTHO05D007648 9.5e-27 127.1 221 36.2
Psat5g005720 Pisum sativum HOM05D001879 ORTHO05D007648 1.4e-25 123.2 174 42.5
Psat5g005800 Pisum sativum HOM05D001879 ORTHO05D007648 2.3e-25 122.5 112 54.5
BolC7t42252H Brassica oleracea HOM05D001879 ORTHO05D007648 5.8e-24 117.9 89 60.7
C07p17470 Brassica napus HOM05D001879 ORTHO05D007648 1.7e-23 116.3 89 60.7
Ca_31153_v3 Cicer arietinum L. HOM05D001879 ORTHO05D009627 6.4e-23 114.4 130 51.5
Psat1g176640 Pisum sativum HOM05D001879 ORTHO05D007648 1.6e-21 109.8 246 34.6
AL4G19860 Arabidopsis lyrata HOM05D001879 ORTHO05D007648 1.9e-14 86.3 84 53.6
CBR_g6294 Chara braunii HOM05D001879 ORTHO05D007648 4.1e-14 85.1 175 35.4
Psat4g136520 Pisum sativum HOM05D001879 ORTHO05D007648 4.1e-14 85.1 78 51.3
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.2e-13 83.6 61 65.6
TAR381G1003 Trochodendron aralioides HOM05D001879 ORTHO05D007648 3.5e-13 82.0 240 35.4
BolC7t42255H Brassica oleracea HOM05D001879 ORTHO05D007648 6.0e-13 81.3 103 44.7
Lalb_Chr22g0355591 Lupinus albus HOM05D001879 ORTHO05D007648 1.3e-12 80.1 177 32.8
PGSC0003DMG400024244 Solanum tuberosum HOM05D001879 ORTHO05D007648 5.1e-12 78.2 76 47.4
BcaC06g35318 Brassica carinata HOM05D011004 ORTHO05D014493 6.6e-12 77.8 188 33.5
PGSC0003DMG400024243 Solanum tuberosum HOM05D001879 ORTHO05D007648 8.6e-12 77.4 76 46.1
BcaC06g35319 Brassica carinata HOM05D001879 ORTHO05D007648 1.1e-11 77.0 53 62.3
Haze_22323 Corylus avellana HOM05D001879 ORTHO05D007648 1.1e-11 77.0 112 49.1
Sopen05g013150 Solanum pennellii HOM05D001879 ORTHO05D007648 4.7e-10 71.6 74 45.9
Cre09.g398030 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007648 6.2e-10 71.2 129 31.0
arahy.Tifrunner.gnm1.ann1.4H8PLX Arachis hypogaea HOM05D001879 ORTHO05D021484 5.8e-08 64.7 54 50.0
Psat7g011440 Pisum sativum HOM05D000252 ORTHO05D015734 1.7e-07 63.2 90 34.4
BcaB03g13969 Brassica carinata HOM05D001879 ORTHO05D007648 6.4e-07 61.2 178 33.1
Pp3c7_3950 Physcomitrium patens HOM05D002300 ORTHO05D002340 1.4e-06 60.1 153 26.8
arahy.Tifrunner.gnm1.ann1.CWP81L Arachis hypogaea HOM05D001879 ORTHO05D021484 3.2e-06 58.9 86 38.4
arahy.Tifrunner.gnm1.ann1.NPA3T0 Arachis hypogaea HOM05D004261 ORTHO05D021484 9.3e-06 57.4 52 44.2


User provided reference genes

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