Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra14G0010700 Salix brachista HOM05D001879 ORTHO05D007957 0.0e+00 1664.8 899 100.0
Potri.014G016900 Populus trichocarpa HOM05D001879 ORTHO05D007957 0.0e+00 1474.1 913 86.5
Manes.05G181300 Manihot esculenta HOM05D001879 ORTHO05D007957 1.2e-302 1043.1 911 65.8
Gorai.002G135500 Gossypium raimondii HOM05D001879 ORTHO05D007957 3.7e-283 978.4 921 59.9
Gohir.A01G122900 Gossypium hirsutum HOM05D001879 ORTHO05D007957 3.8e-280 968.4 931 58.5
Cfa013682 Carpinus fangiana HOM05D001879 ORTHO05D007957 6.6e-280 967.6 916 60.9
Gohir.D01G110700 Gossypium hirsutum HOM05D001879 ORTHO05D007957 8.6e-280 967.2 934 59.1
QL12p037915 Quercus lobata HOM05D001879 ORTHO05D007957 4.4e-276 954.9 916 60.7
TWI56G1363 Tripterygium wilfordii HOM05D001879 ORTHO05D007957 2.2e-275 952.6 954 56.8
Dinv44961 Davidia involucrata HOM05D001879 ORTHO05D007957 8.3e-275 950.7 810 63.1
CANSAT11G0135 Cannabis sativa HOM05D001879 ORTHO05D007957 4.5e-273 944.9 895 61.1
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 3.4e-268 928.7 883 59.1
Hma1.2p1_0210F.1_g089520 Hydrangea macrophylla HOM05D001879 ORTHO05D007957 4.4e-268 928.3 892 59.1
FvH4_2g33210 Fragaria vesca HOM05D001879 ORTHO05D007957 6.0e-265 917.9 950 56.2
MD08G1085900 Malus domestica HOM05D001879 ORTHO05D007957 3.9e-264 915.2 951 55.9
MD15G1071100 Malus domestica HOM05D001879 ORTHO05D007957 6.6e-264 914.4 923 57.6
Ca_15906_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007957 9.5e-263 910.6 912 57.0
CiPaw.07G175800 Carya illinoinensis HOM05D001879 ORTHO05D007957 1.4e-261 906.7 915 56.4
FAN27G1994 Fragaria x ananassa HOM05D001879 ORTHO05D007957 5.8e-260 901.4 946 55.7
RcHm_v2.0_Chr6g0309461 Rosa chinensis HOM05D001879 ORTHO05D007957 5.8e-260 901.4 818 60.9
Lj1g0023876 Lotus japonicus HOM05D001879 ORTHO05D007957 7.5e-260 901.0 920 56.2
FAN15G2911 Fragaria x ananassa HOM05D001879 ORTHO05D007957 9.8e-260 900.6 950 54.7
Glyma.04G045100 Glycine max HOM05D001879 ORTHO05D007957 9.8e-260 900.6 816 58.9
arahy.Tifrunner.gnm1.ann1.0Z12M9 Arachis hypogaea HOM05D001879 ORTHO05D007957 1.3e-259 900.2 822 60.1
Eucgr.F02257 Eucalyptus grandis HOM05D001879 ORTHO05D007957 1.3e-259 900.2 894 56.7
arahy.Tifrunner.gnm1.ann1.D4I9HU Arachis hypogaea HOM05D001879 ORTHO05D007957 2.9e-259 899.0 920 56.5
FAN20G0243 Fragaria x ananassa HOM05D001879 ORTHO05D007957 3.2e-258 895.6 948 57.5
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 1.6e-257 893.3 915 56.3
GSVIVG01009355001 Vitis vinifera HOM05D001879 ORTHO05D007957 1.3e-256 890.2 859 58.1
Lalb_Chr11g0062861 Lupinus albus HOM05D001879 ORTHO05D007957 5.1e-256 888.3 914 56.3
Prupe.1G423800 Prunus persica HOM05D001879 ORTHO05D007957 1.1e-255 887.1 919 56.9
Cpa.g.sc142.17 Carica papaya HOM05D001879 ORTHO05D007957 2.3e-253 879.4 915 56.2
Glyma.06G045600 Glycine max HOM05D001879 ORTHO05D007957 5.2e-253 878.2 909 54.8
VMungo1309G0716 Vigna mungo HOM05D001879 ORTHO05D007957 2.6e-252 875.9 912 54.5
Actinidia38101 Actinidia chinensis HOM05D001879 ORTHO05D007957 3.4e-252 875.5 889 55.2
Psat0s3943g0040 Pisum sativum HOM05D001879 ORTHO05D007957 3.4e-252 875.5 915 55.8
Medtr3g103040 Medicago truncatula HOM05D001879 ORTHO05D007957 4.9e-251 871.7 903 56.4
Phvul.009G071000 Phaseolus vulgaris HOM05D001879 ORTHO05D007957 4.9e-251 871.7 899 54.8
FAN24G3463 Fragaria x ananassa HOM05D001879 ORTHO05D007957 7.1e-250 867.8 998 52.4
Nitab4.5_0003803g0010 Nicotiana tabacum HOM05D001879 ORTHO05D007957 9.2e-250 867.5 900 54.0
THA.LOC104820515 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 2.7e-249 865.9 814 57.7
Cc10_g05700 Coffea canephora HOM05D001879 ORTHO05D007957 7.8e-249 864.4 921 53.1
CsaV3_4G035000 Cucumis sativus L. HOM05D001879 ORTHO05D007957 1.1e-247 860.5 912 54.8
Nitab4.5_0000164g0140 Nicotiana tabacum HOM05D001879 ORTHO05D007957 4.3e-247 858.6 901 54.4
Actinidia08249 Actinidia chinensis HOM05D001879 ORTHO05D007957 1.6e-246 856.7 809 58.6
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 3.6e-246 855.5 914 54.0
Thhalv10006764m.g Eutrema salsugineum HOM05D001879 ORTHO05D007957 1.2e-244 850.5 806 58.1
AL1G41290 Arabidopsis lyrata HOM05D001879 ORTHO05D007957 2.6e-244 849.4 800 57.9
AT1G27752 Arabidopsis thaliana HOM05D001879 ORTHO05D007957 4.4e-244 848.6 808 58.0
Sp1g23990 Schrenkiella parvula HOM05D001879 ORTHO05D007957 3.8e-243 845.5 805 57.9
Lj4A759G42 Lonicera japonica HOM05D001879 ORTHO05D007957 1.4e-242 843.6 903 54.0
ClCG05G020560 Citrullus lanatus HOM05D001879 ORTHO05D007957 7.1e-242 841.3 943 52.6
THA.LOC104812592 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 7.1e-242 841.3 918 54.4
Aa31sc113G40 Aethionema arabicum HOM05D001879 ORTHO05D007957 2.1e-241 839.7 809 56.2
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 3.9e-240 835.5 852 54.6
C03p74580 Brassica napus HOM05D001879 ORTHO05D007957 2.5e-239 832.8 801 57.6
CAN.G724.12 Capsicum annuum HOM05D001879 ORTHO05D007957 3.3e-239 832.4 804 57.1
A08p26070 Brassica napus HOM05D001879 ORTHO05D007957 7.3e-239 831.2 808 57.2
Carub.0001s2627 Capsella rubella HOM05D001879 ORTHO05D007957 1.6e-238 830.1 806 56.6
BraA08t34557Z Brassica rapa HOM05D001879 ORTHO05D007957 4.7e-238 828.6 808 57.1
BolC3t19706H Brassica oleracea HOM05D001879 ORTHO05D007957 9.0e-237 824.3 812 56.4
Hund05306 Selenicereus undatus HOM05D001879 ORTHO05D007957 9.0e-237 824.3 949 50.2
vmacro22058 Vaccinium macrocarpon HOM05D001879 ORTHO05D007957 4.9e-235 818.5 933 51.1
Sopen04g031530 Solanum pennellii HOM05D001879 ORTHO05D007957 1.9e-234 816.6 811 55.7
Migut.N02775 Erythranthe guttata HOM05D001879 ORTHO05D007957 2.4e-234 816.2 921 54.7
Oeu057374.1 Olea europaea HOM05D001879 ORTHO05D007957 7.1e-234 814.7 905 53.5
Solyc04g077930.4 Solanum lycopersicum HOM05D001879 ORTHO05D007957 1.6e-233 813.5 811 55.4
Aqoxy6G02668 Aquilegia oxysepala HOM05D001879 ORTHO05D007957 1.6e-230 803.5 854 53.9
EL10Ac1g02390 Beta vulgaris HOM05D001879 ORTHO05D007957 2.0e-228 796.6 821 53.8
TPR.G33684 Trifolium pratense HOM05D001879 ORTHO05D007957 2.0e-228 796.6 959 49.5
Sc26g0004180 Simmondsia chinensis HOM05D001879 ORTHO05D007957 8.4e-227 791.2 922 51.4
HanXRQChr01g0027941 Helianthus annuus HOM05D001879 ORTHO05D007957 1.1e-226 790.8 937 51.0
Nn1g04585 Nelumbo nucifera HOM05D001879 ORTHO05D007957 9.3e-226 787.7 894 52.1
AUR62038791 Chenopodium quinoa HOM05D001879 ORTHO05D007957 1.2e-225 787.3 897 51.2
BcaC01g01572 Brassica carinata HOM05D001879 ORTHO05D007957 3.3e-223 779.2 812 54.9
AUR62037429 Chenopodium quinoa HOM05D001879 ORTHO05D007957 9.6e-223 777.7 804 53.7
SalBow6G3417 Salvia bowleyana HOM05D001879 ORTHO05D007957 9.6e-223 777.7 923 51.7
PSO675G4263 Papaver somniferum HOM05D001879 ORTHO05D007957 4.0e-221 772.3 840 52.4
PSO541G1802 Papaver somniferum HOM05D001879 ORTHO05D007957 7.1e-218 761.5 795 52.8
SGA_v2.0_scaffold152G36803 Striga asiatica HOM05D001879 ORTHO05D007957 1.9e-215 753.4 814 52.6
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 2.8e-214 749.6 890 50.0
ECA246G2822 Erigeron canadensis HOM05D001879 ORTHO05D007957 1.3e-206 724.2 720 55.0
Thecc.08G089900 Theobroma cacao HOM05D001879 ORTHO05D007957 8.2e-206 721.5 699 60.2
CDE02G0795 Ceratophyllum demersum HOM05D001879 ORTHO05D007957 4.6e-201 705.7 815 49.9
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 6.7e-200 701.8 893 49.0
ATR0208G030 Amborella trichopoda HOM05D001879 ORTHO05D007957 1.7e-198 697.2 882 47.2
unitig_578.g16146 Utricularia gibba HOM05D001879 ORTHO05D007957 7.4e-183 645.2 805 47.0
Os03g0205000 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007957 2.2e-182 643.7 743 50.2
Sed0020869 Sechium edule HOM05D001879 ORTHO05D007957 1.6e-180 637.5 719 51.6
Zm00001eb007600 Zea mays HOM05D001879 ORTHO05D007957 2.7e-177 626.7 832 45.8
PGSC0003DMG400021524 Solanum tuberosum HOM05D001879 ORTHO05D007957 6.8e-176 622.1 628 54.9
CARHR027270 Cardamine hirsuta HOM05D001879 ORTHO05D007957 4.0e-168 596.3 594 55.2
HPP92_009537 Vanilla planifolia HOM05D001879 ORTHO05D007957 1.3e-166 591.3 761 47.0
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 4.2e-162 576.2 514 59.1
Lsat_1_v5_gn_6_112340 Lactuca sativa HOM05D001879 ORTHO05D007957 2.8e-158 563.5 907 41.1
CSS0023334 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 1.9e-154 550.8 427 63.9
Haze_22326 Corylus avellana HOM05D001879 ORTHO05D007957 2.3e-152 543.9 551 59.0
TAR381G0637 Trochodendron aralioides HOM05D001879 ORTHO05D007957 2.2e-150 537.3 512 57.2
DCAR_009884 Daucus carota HOM05D001879 ORTHO05D007957 4.9e-150 536.2 910 43.2
Peaxi162Scf00081g00176 Petunia axillaris HOM05D001879 ORTHO05D007957 3.4e-135 486.9 580 51.4
MD03G1160700 Malus domestica HOM05D001879 ORTHO05D007957 1.6e-124 451.4 431 56.4
Mapoly0067s0042 Marchantia polymorpha HOM05D001879 ORTHO05D007957 7.9e-100 369.4 814 35.3
SHI08396 Sapria himalayana HOM05D001879 ORTHO05D007957 2.2e-94 351.3 473 46.9
CANSAT25G3038 Cannabis sativa HOM05D001879 ORTHO05D007957 2.6e-87 327.8 241 69.7
TAR381G1515 Trochodendron aralioides HOM05D001879 ORTHO05D007957 5.9e-87 326.6 379 53.8
Pp3c2_23190 Physcomitrium patens HOM05D001879 ORTHO05D007957 2.5e-77 294.7 1012 27.2
SMO347G0602 Selaginella moellendorffii HOM05D001879 ORTHO05D007957 3.2e-77 294.3 721 31.3
AagrBONN_evm.TU.Sc2ySwM_362.2893 Anthoceros agrestis HOM05D001879 ORTHO05D007957 1.5e-74 285.4 721 30.8
Haze_22325 Corylus avellana HOM05D001879 ORTHO05D007957 8.8e-67 259.6 222 65.3
CBR_g57086 Chara braunii HOM05D001879 ORTHO05D007957 5.7e-66 256.9 1100 26.5
BraA09t40950Z Brassica rapa HOM05D001879 ORTHO05D007957 2.9e-54 218.0 149 69.8
SEGI_28261 Sequoiadendron giganteum HOM05D001879 ORTHO05D007957 4.2e-53 214.2 294 44.2
Atru.chr13.821 Acer truncatum HOM05D001879 ORTHO05D007957 3.6e-44 184.5 253 54.9
SHI08398 Sapria himalayana HOM05D001879 ORTHO05D007957 2.3e-35 155.2 238 40.8
CSS0041216 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 9.2e-32 143.3 194 46.4
HanXRQChr05g0145561 Helianthus annuus HOM05D001879 ORTHO05D007957 7.3e-21 107.1 64 71.9
Cfa000625 Carpinus fangiana HOM05D001879 ORTHO05D007957 1.6e-20 105.9 139 51.8
MCO02G333 Micromonas commoda HOM05D001879 ORTHO05D007957 3.7e-17 94.7 738 25.1
SHI08400 Sapria himalayana HOM05D001879 ORTHO05D007957 2.7e-15 88.6 106 50.9
Cfa010565 Carpinus fangiana HOM05D001879 ORTHO05D007957 3.9e-14 84.7 84 54.8
HPP92_009536 Vanilla planifolia HOM05D001879 ORTHO05D007957 7.3e-13 80.5 134 40.3
C05p26450 Brassica napus HOM05D001879 ORTHO05D007957 3.6e-12 78.2 86 51.2
BolC5t31366H Brassica oleracea HOM05D001879 ORTHO05D007957 3.6e-12 78.2 86 51.2
Cre13.g568750 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007957 1.7e-09 69.3 61 55.7
AagrBONN_evm.TU.Sc2ySwM_368.1487 Anthoceros agrestis HOM05D001879 ORTHO05D007957 9.3e-08 63.5 73 49.3


User provided reference genes

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