Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0129300 Salix brachista HOM05D006383 ORTHO05D007815 0.0e+00 1223.4 613 100.0
Potri.013G161700 Populus trichocarpa HOM05D006383 ORTHO05D007815 7.1e-270 933.7 618 80.1
Manes.15G189200 Manihot esculenta HOM05D006383 ORTHO05D007815 6.8e-236 820.8 618 69.7
Nn1g08377 Nelumbo nucifera HOM05D006383 ORTHO05D007815 8.8e-228 793.9 619 67.5
Atru.chr4.4 Acer truncatum HOM05D006383 ORTHO05D007815 2.6e-227 792.3 620 67.7
TAR317G0001 Trochodendron aralioides HOM05D006383 ORTHO05D007815 1.1e-225 786.9 621 67.5
GSVIVG01027490001 Vitis vinifera HOM05D006383 ORTHO05D007815 1.8e-225 786.2 615 68.0
TWI79G0526 Tripterygium wilfordii HOM05D006383 ORTHO05D007815 9.1e-225 783.9 620 67.3
Glyma.01G231700 Glycine max HOM05D006383 ORTHO05D007815 1.3e-223 780.0 620 66.6
Glyma.11G014600 Glycine max HOM05D006383 ORTHO05D007815 5.5e-222 774.6 620 66.3
QL10p065235 Quercus lobata HOM05D006383 ORTHO05D007815 8.0e-221 770.8 653 63.9
LjContig00222g0014398 Lotus japonicus HOM05D006383 ORTHO05D007815 1.0e-220 770.4 615 66.7
Medtr5g008710 Medicago truncatula HOM05D006383 ORTHO05D007815 2.3e-220 769.2 618 66.0
TPR.G38040 Trifolium pratense HOM05D006383 ORTHO05D007815 2.3e-220 769.2 618 65.2
VMungo1215G1626 Vigna mungo HOM05D006383 ORTHO05D007815 3.0e-220 768.8 615 66.0
Duzib248G1218 Durio zibethinus HOM05D006383 ORTHO05D007815 5.7e-219 764.6 616 65.9
Phvul.002G035400 Phaseolus vulgaris HOM05D006383 ORTHO05D007815 3.7e-218 761.9 621 65.2
Psat2g186800 Pisum sativum HOM05D006383 ORTHO05D007815 3.2e-217 758.8 618 64.7
Actinidia07537 Actinidia chinensis HOM05D006383 ORTHO05D007815 1.7e-215 753.1 615 65.2
Prupe.2G049900 Prunus persica HOM05D006383 ORTHO05D007815 1.1e-214 750.4 619 65.3
Lj8A304T42 Lonicera japonica HOM05D006383 ORTHO05D007815 1.5e-214 750.0 644 63.2
Haze_11088 Corylus avellana HOM05D006383 ORTHO05D007815 1.2e-213 746.9 627 64.6
CSS0026217 Camellia sinensis var. sinensis HOM05D006383 ORTHO05D007815 3.4e-211 738.8 615 64.2
Cfa008544 Carpinus fangiana HOM05D006383 ORTHO05D007815 3.4e-211 738.8 620 65.3
CiPaw.02G126400 Carya illinoinensis HOM05D006383 ORTHO05D007815 2.4e-209 732.6 628 64.0
DCAR_020439 Daucus carota HOM05D006383 ORTHO05D007815 8.6e-207 724.2 621 62.5
Lsat_1_v5_gn_5_82200 Lactuca sativa HOM05D006383 ORTHO05D007815 2.8e-205 719.2 620 61.6
Migut.L01608 Erythranthe guttata HOM05D006383 ORTHO05D007815 4.7e-205 718.4 615 61.8
ECA234G1746 Erigeron canadensis HOM05D006383 ORTHO05D007815 1.4e-204 716.8 620 61.9
HanXRQChr10g0309251 Helianthus annuus HOM05D006383 ORTHO05D007815 1.2e-203 713.8 620 62.1
MELO3C006225.2 Cucumis melo HOM05D006383 ORTHO05D007815 1.5e-203 713.4 623 61.8
ClCG05G002590 Citrullus lanatus HOM05D006383 ORTHO05D007815 2.0e-203 713.0 623 62.0
PSO782G2360 Papaver somniferum HOM05D006383 ORTHO05D007815 2.6e-203 712.6 615 62.1
Eucgr.E01781 Eucalyptus grandis HOM05D006383 ORTHO05D007815 5.8e-203 711.4 618 61.8
Hma1.2p1_0122F.1_g057520 Hydrangea macrophylla HOM05D006383 ORTHO05D007815 9.8e-203 710.7 617 63.0
PSO063G0245 Papaver somniferum HOM05D006383 ORTHO05D007815 1.3e-202 710.3 624 61.2
CAN.G40.1 Capsicum annuum HOM05D006383 ORTHO05D007815 9.2e-201 704.1 622 60.8
Gorai.012G136900 Gossypium raimondii HOM05D006383 ORTHO05D007815 1.6e-200 703.4 617 62.7
THA.LOC104813077 Tarenaya hassleriana HOM05D006383 ORTHO05D007815 1.6e-200 703.4 628 60.4
CANSAT01G2053 Cannabis sativa HOM05D006383 ORTHO05D007815 2.1e-200 703.0 616 62.3
Sed0006461 Sechium edule HOM05D006383 ORTHO05D007815 3.5e-200 702.2 618 61.7
Gohir.D04G150300 Gossypium hirsutum HOM05D006383 ORTHO05D007815 4.6e-200 701.8 617 62.7
RcHm_v2.0_Chr1g0329651 Rosa chinensis HOM05D006383 ORTHO05D007815 1.3e-199 700.3 614 61.7
MD02G1269900 Malus domestica HOM05D006383 ORTHO05D007815 1.7e-199 699.9 615 62.1
Aqoxy1G01561 Aquilegia oxysepala HOM05D006383 ORTHO05D007815 3.0e-199 699.1 621 60.4
Hund03213 Selenicereus undatus HOM05D006383 ORTHO05D007815 3.0e-199 699.1 615 61.1
Gohir.A04G110100 Gossypium hirsutum HOM05D006383 ORTHO05D007815 5.1e-199 698.4 617 62.6
Peaxi162Scf00005g01511 Petunia axillaris HOM05D006383 ORTHO05D007815 5.1e-199 698.4 650 58.9
Solyc01g056340.4 Solanum lycopersicum HOM05D006383 ORTHO05D007815 5.6e-198 694.9 604 61.1
Lalb_Chr05g0211431 Lupinus albus HOM05D006383 ORTHO05D007815 1.6e-197 693.3 573 64.4
Sp6g07220 Schrenkiella parvula HOM05D006383 ORTHO05D007815 1.5e-195 686.8 622 60.1
Sc26g0001410 Simmondsia chinensis HOM05D006383 ORTHO05D007815 1.5e-195 686.8 620 60.0
Thhalv10028566m.g Eutrema salsugineum HOM05D006383 ORTHO05D007815 5.8e-195 684.9 622 59.8
FAN10G0291 Fragaria x ananassa HOM05D006383 ORTHO05D007815 7.6e-195 684.5 617 61.1
FAN03G2677 Fragaria x ananassa HOM05D006383 ORTHO05D007815 2.7e-192 676.0 622 60.9
AL6G44030 Arabidopsis lyrata HOM05D006383 ORTHO05D007815 7.8e-192 674.5 627 58.9
BcaB01g02763 Brassica carinata HOM05D006383 ORTHO05D007815 1.3e-191 673.7 619 58.5
CDE09G0807 Ceratophyllum demersum HOM05D006383 ORTHO05D007815 1.3e-191 673.7 615 57.9
BraA03t12085Z Brassica rapa HOM05D006383 ORTHO05D007815 5.6e-190 668.3 621 57.8
Carub.0006s2874 Capsella rubella HOM05D006383 ORTHO05D007815 2.8e-189 666.0 629 57.6
BolC3t15801H Brassica oleracea HOM05D006383 ORTHO05D007815 4.7e-189 665.2 621 57.5
AT4G10180 Arabidopsis thaliana HOM05D006383 ORTHO05D007815 6.2e-189 664.8 628 58.0
C03p34900 Brassica napus HOM05D006383 ORTHO05D007815 8.1e-189 664.5 621 57.3
CARHR256640 Cardamine hirsuta HOM05D006383 ORTHO05D007815 8.1e-189 664.5 629 57.2
BcaC01g04690 Brassica carinata HOM05D006383 ORTHO05D007815 1.1e-188 664.1 621 57.3
A03p28870 Brassica napus HOM05D006383 ORTHO05D007815 1.4e-188 663.7 622 57.7
SGA_v2.0_scaffold222G42760 Striga asiatica HOM05D006383 ORTHO05D007815 2.6e-187 659.4 614 56.5
Aa31LG9G11770 Aethionema arabicum HOM05D006383 ORTHO05D007815 2.5e-182 642.9 618 57.0
Oeu021235.1 Olea europaea HOM05D006383 ORTHO05D007815 1.1e-180 637.5 615 57.6
PGR042G0734 Punica granatum HOM05D006383 ORTHO05D007815 6.9e-180 634.8 613 57.4
Ciclev10015119m.g Citrus clementina HOM05D006383 ORTHO05D007815 5.4e-177 625.2 557 61.8
Os01g0104600 Oryza sativa ssp. japonica HOM05D006383 ORTHO05D007815 1.7e-175 620.2 611 54.2
SalBow3G0737 Salvia bowleyana HOM05D006383 ORTHO05D007815 6.6e-175 618.2 659 52.8
SalBow5G2916 Salvia bowleyana HOM05D006383 ORTHO05D007815 6.6e-175 618.2 659 52.8
Zm00001eb317230 Zea mays HOM05D006383 ORTHO05D007815 8.1e-173 611.3 611 53.8
Thecc.02G151200 Theobroma cacao HOM05D006383 ORTHO05D007815 1.4e-172 610.5 519 64.2
Sopen01g020390 Solanum pennellii HOM05D006383 ORTHO05D007815 5.3e-172 608.6 542 59.8
Zm00001eb341540 Zea mays HOM05D006383 ORTHO05D007815 6.9e-172 608.2 612 54.1
FAN06G4711 Fragaria x ananassa HOM05D006383 ORTHO05D007815 2.6e-171 606.3 617 55.9
Nitab4.5_0007118g0010 Nicotiana tabacum HOM05D006383 ORTHO05D007815 2.4e-169 599.7 638 53.3
ATR0620G042 Amborella trichopoda HOM05D006383 ORTHO05D007815 7.9e-168 594.7 582 56.7
FAN01G1101 Fragaria x ananassa HOM05D006383 ORTHO05D007815 1.8e-167 593.6 678 52.4
unitig_8.g3541 Utricularia gibba HOM05D006383 ORTHO05D007815 5.1e-167 592.0 576 55.0
CsaV3_3G010030 Cucumis sativus L. HOM05D006383 ORTHO05D007815 1.6e-165 587.0 617 55.3
EL10Ac3g06365 Beta vulgaris HOM05D006383 ORTHO05D007815 1.1e-161 574.3 733 46.8
Ah.07g203930 Amaranthus hybridus HOM05D000443 ORTHO05D001278 3.1e-156 556.2 615 51.2
FvH4_7g04420 Fragaria vesca HOM05D006383 ORTHO05D007815 7.6e-155 551.6 540 57.6
AUR62030094 Chenopodium quinoa HOM05D006383 ORTHO05D007815 1.9e-153 547.0 620 49.4
CiPaw.01G204500 Carya illinoinensis HOM05D006383 ORTHO05D007815 4.3e-150 535.8 492 60.2
Ca_24479_v3 Cicer arietinum L. HOM05D006383 ORTHO05D007815 3.8e-146 522.7 518 56.8
SMO351G0573 Selaginella moellendorffii HOM05D006383 ORTHO05D007815 1.2e-139 501.1 623 44.5
HPP92_027515 Vanilla planifolia HOM05D006383 ORTHO05D007815 4.5e-139 499.2 570 50.9
Dinv26644 Davidia involucrata HOM05D006383 ORTHO05D007815 2.0e-134 483.8 401 63.8
Rhsim01G0101600 Rhododendron simsii HOM05D006383 ORTHO05D007815 5.3e-124 449.1 307 73.3
SHI24488 Sapria himalayana HOM05D006383 ORTHO05D007815 7.2e-121 438.7 589 46.0
Nitab4.5_0021341g0010 Nicotiana tabacum HOM05D006383 ORTHO05D007815 2.3e-119 433.7 294 71.8
Hma1.2p1_0122F.1_g057530 Hydrangea macrophylla HOM05D006383 ORTHO05D007815 8.3e-117 425.2 426 57.5
PGSC0003DMG400031459 Solanum tuberosum HOM05D006383 ORTHO05D007815 2.6e-110 403.7 275 72.0
Pp3c21_10400 Physcomitrium patens HOM05D006383 ORTHO05D007815 1.3e-106 391.3 882 32.8
Pp3c11_18250 Physcomitrium patens HOM05D006383 ORTHO05D007815 8.6e-106 388.7 846 33.2
Cc06_g23460 Coffea canephora HOM05D006383 ORTHO05D007815 1.2e-104 384.8 253 72.3
HPP92_022397 Vanilla planifolia HOM05D006383 ORTHO05D007815 1.4e-103 381.3 451 51.0
FAN06G0936 Fragaria x ananassa HOM05D006383 ORTHO05D007815 3.0e-103 380.2 295 65.4
AagrBONN_evm.TU.Sc2ySwM_228.1213 Anthoceros agrestis HOM05D006383 ORTHO05D007815 4.0e-103 379.8 972 31.0
Mapoly0064s0101 Marchantia polymorpha HOM05D006383 ORTHO05D007815 1.1e-100 371.7 954 31.2
Pp3c19_5540 Physcomitrium patens HOM05D006383 ORTHO05D007815 1.6e-99 367.9 892 30.8
Nitab4.5_0000075g0020 Nicotiana tabacum HOM05D006383 ORTHO05D007815 8.9e-87 325.5 269 65.4
ECA240G0013 Erigeron canadensis HOM05D006383 ORTHO05D007815 2.5e-81 307.4 396 48.0
vmacro20727 Vaccinium macrocarpon HOM05D006383 ORTHO05D007815 4.3e-81 306.6 194 79.9
HPP92_022268 Vanilla planifolia HOM05D006383 ORTHO05D007815 2.9e-77 293.9 201 74.6
Cpa.g.sc21.223 Carica papaya HOM05D006383 ORTHO05D007815 2.5e-73 280.8 172 80.8
CBR_g19443 Chara braunii HOM05D006383 ORTHO05D007815 6.4e-61 239.6 279 44.1
AUR62038212 Chenopodium quinoa HOM05D006383 ORTHO05D007815 1.3e-58 231.9 350 42.6
Sopen01g020410 Solanum pennellii HOM05D006383 ORTHO05D007815 7.7e-30 136.3 83 80.7
SEGI_12536 Sequoiadendron giganteum HOM05D006383 ORTHO05D007815 2.6e-22 111.3 164 45.7
Glyma.13G043200 Glycine max HOM05D006383 ORTHO05D007815 2.2e-21 108.2 68 82.4
Cre13.g571560 Chlamydomonas reinhardtii HOM05D006383 ORTHO05D007815 1.9e-20 105.1 245 28.2
CDE11G0182 Ceratophyllum demersum HOM05D006383 ORTHO05D007815 2.2e-16 91.7 238 29.4
arahy.Tifrunner.gnm1.ann1.W6TY16 Arachis hypogaea HOM05D000199 ORTHO05D007815 5.2e-10 70.5 48 77.1
PRCOL_00006914 Prasinoderma coloniale HOM05D006383 ORTHO05D007815 3.3e-09 67.8 134 33.6
MCO10G269 Micromonas commoda HOM05D006383 ORTHO05D007815 6.3e-08 63.5 71 43.7
Actinidia02533 Actinidia chinensis HOM05D006383 ORTHO05D007815 1.1e-07 62.8 39 76.9
MBI11_g43687_MAGBIO Magnolia biondii HOM05D006383 ORTHO05D007815 1.4e-07 62.4 34 79.4


User provided reference genes

Program Settings