Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 2068.9 974 100.0
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1994.2 974 96.1
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1771.5 974 83.7
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1741.5 974 82.2
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1741.1 976 82.9
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1736.1 974 80.9
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1730.7 975 81.3
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1728.8 975 81.5
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1728.0 958 82.8
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1723.0 973 81.0
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1721.4 986 80.8
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1709.1 976 81.1
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1705.6 969 80.9
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1703.7 970 80.8
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1703.3 972 80.3
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1701.8 969 81.1
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1689.1 971 80.6
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1688.3 973 79.7
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1686.4 973 79.5
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1677.9 974 79.2
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1677.1 973 79.5
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1675.6 979 80.1
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1670.2 972 78.2
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1669.8 979 79.0
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1669.1 973 78.7
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1669.1 980 79.2
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1667.1 975 78.3
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1661.0 980 79.1
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1657.5 968 78.7
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1650.6 970 79.0
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1643.6 975 78.1
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1643.6 976 76.7
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1640.2 967 78.5
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1640.2 977 77.7
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1636.3 973 77.6
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1634.4 985 76.8
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1631.7 971 78.3
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1628.2 975 76.9
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1627.1 969 77.2
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1627.1 968 77.2
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1625.5 963 77.4
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1623.2 952 79.1
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1618.2 969 76.6
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1617.8 964 77.6
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1613.6 964 77.2
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1613.2 964 78.0
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1610.5 971 76.2
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1610.1 963 76.7
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1609.3 966 76.8
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1609.0 974 76.1
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1606.7 964 76.9
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1606.7 967 76.7
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1605.9 964 76.6
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1604.3 927 79.6
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1603.2 967 76.4
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1602.0 959 76.6
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1601.6 962 76.6
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1601.3 972 76.1
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1598.6 964 77.5
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1594.7 940 77.8
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1593.9 968 76.4
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1593.2 977 75.3
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1591.2 969 76.9
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1590.9 971 75.7
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1590.5 969 76.7
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1589.7 972 75.0
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1589.3 966 75.6
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1586.6 979 76.2
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1585.1 973 74.8
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1582.8 974 74.8
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1582.0 969 76.1
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1577.8 969 76.2
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1576.6 974 73.6
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1576.6 968 75.8
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1572.0 970 75.6
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1568.5 982 74.0
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1567.7 969 75.9
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1562.4 973 73.4
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1561.2 969 74.4
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1560.0 973 74.6
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1559.3 968 75.0
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1558.9 977 74.1
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1557.3 978 74.0
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1557.0 972 74.2
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1550.4 980 74.3
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1548.5 877 79.9
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1547.7 960 75.7
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1545.8 971 73.2
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1535.4 980 73.8
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1525.0 996 72.9
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1520.4 962 73.1
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1508.4 980 70.6
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1506.1 977 71.5
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1504.2 969 71.3
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1502.6 985 70.7
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1485.7 873 77.8
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1484.9 980 71.5
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1484.5 983 70.4
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1479.2 984 71.0
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1479.2 844 80.7
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1478.4 979 71.2
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1474.9 971 70.5
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1472.6 979 70.7
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1467.2 979 70.7
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1464.9 979 70.5
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1464.9 980 70.7
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1464.9 980 70.7
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1464.1 980 70.9
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1462.6 979 70.2
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1446.4 847 78.0
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1442.2 980 69.5
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1441.0 980 69.7
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1437.9 976 69.8
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1432.5 976 69.6
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1424.8 979 69.9
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1422.9 980 69.2
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1421.8 1002 66.5
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1363.2 977 65.5
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1362.1 975 67.0
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1348.6 761 80.0
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1341.3 980 66.9
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1325.1 979 65.8
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1321.6 763 80.3
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1272.3 852 70.1
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1257.3 785 74.4
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1255.4 781 74.5
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1226.8 786 72.1
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 0.0e+00 1076.2 978 54.4
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 5.6e-309 1064.3 686 72.3
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 1.5e-301 1039.6 960 54.1
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 1.5e-290 1003.0 716 68.0
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 7.1e-280 967.6 964 52.7
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 4.6e-271 938.3 959 49.6
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.1e-268 929.5 563 76.6
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 9.6e-261 904.0 979 47.8
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 9.7e-237 824.3 842 50.1
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 2.3e-206 723.4 402 80.1
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 7.6e-141 505.8 288 80.9
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 5.5e-139 499.6 404 61.9
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 5.1e-121 439.9 379 60.2
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 1.7e-119 434.9 343 61.2
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 3.8e-108 397.1 215 85.1
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 1.9e-91 341.7 192 81.8
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 5.2e-89 333.6 275 58.5
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 6.8e-89 333.2 202 72.8
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 9.2e-78 296.2 159 83.6
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 1.4e-73 282.3 214 62.6
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 1.6e-69 268.9 143 85.3
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 6.0e-69 266.9 156 76.3
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 1.1e-62 246.1 643 30.0
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 3.2e-54 218.0 147 69.4
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 6.6e-52 210.3 380 38.7
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 5.1e-44 184.1 150 61.3
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 3.3e-43 181.4 160 55.6
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 4.8e-42 177.6 96 81.2
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.4e-41 176.0 796 24.2
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 5.5e-38 164.1 148 54.1
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 2.7e-37 161.8 92 84.8
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 4.5e-32 144.4 116 56.9
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 5.8e-32 144.1 93 68.8
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 7.1e-30 137.1 118 58.5
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 1.3e-28 132.9 88 65.9
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 7.6e-24 117.1 183 37.7
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 3.6e-21 108.2 183 36.6
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 5.7e-19 100.9 302 27.8
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 2.4e-17 95.5 119 44.5
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 1.7e-15 89.4 114 44.7
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 5.5e-14 84.3 71 57.7
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 6.1e-13 80.9 57 61.4
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 2.6e-11 75.5 47 74.5
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 1.3e-10 73.2 76 51.3
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 7.7e-08 63.9 78 44.9
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.3e-07 63.2 44 68.2


User provided reference genes

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