Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 1.6e-134 483.4 378 100.0
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 6.2e-131 471.5 378 98.1
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 1.3e-117 427.2 381 90.3
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 1.2e-110 404.1 383 84.1
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 1.6e-110 403.7 384 83.9
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 2.1e-110 403.3 221 86.4
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 3.5e-110 402.5 398 84.7
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 7.9e-110 401.4 382 83.8
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 3.9e-109 399.1 382 81.9
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 6.7e-109 398.3 221 86.0
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 7.4e-108 394.8 379 84.2
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 2.1e-107 393.3 221 85.1
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 2.8e-107 392.9 378 75.1
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 4.8e-107 392.1 378 82.3
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 1.4e-106 390.6 381 81.6
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 2.4e-106 389.8 380 80.0
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 2.0e-105 386.7 222 87.8
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 3.4e-105 386.0 385 80.3
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 4.5e-105 385.6 378 82.3
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 2.2e-104 383.3 378 84.9
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 2.9e-104 382.9 388 80.4
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 1.9e-103 380.2 382 79.6
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 1.9e-103 380.2 382 79.6
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 1.9e-103 380.2 384 83.1
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 4.2e-103 379.0 222 83.8
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 4.2e-103 379.0 221 82.8
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 5.5e-103 378.6 222 82.4
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 7.1e-103 378.3 222 82.0
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 9.3e-103 377.9 390 79.0
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 9.3e-103 377.9 390 79.0
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 9.3e-103 377.9 387 78.6
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 9.3e-103 377.9 222 84.7
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 1.2e-102 377.5 377 85.9
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 1.2e-102 377.5 386 81.9
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.6e-102 377.1 220 80.9
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 2.1e-102 376.7 385 78.7
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 3.5e-102 375.9 389 79.4
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 3.5e-102 375.9 402 79.6
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 3.5e-102 375.9 222 82.0
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 6.0e-102 375.2 222 82.4
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 7.9e-102 374.8 410 77.8
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 7.9e-102 374.8 383 85.9
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 7.9e-102 374.8 386 79.3
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 1.3e-101 374.0 222 82.9
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 1.8e-101 373.6 378 82.5
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 3.0e-101 372.9 391 81.6
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 3.9e-101 372.5 222 83.3
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 3.9e-101 372.5 386 82.1
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 1.1e-100 370.9 386 79.0
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 2.5e-100 369.8 217 84.3
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 3.3e-100 369.4 381 81.9
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 4.3e-100 369.0 221 83.3
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 4.3e-100 369.0 377 83.3
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 7.4e-100 368.2 391 81.1
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 9.6e-100 367.9 377 78.8
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 9.6e-100 367.9 220 81.8
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 1.6e-99 367.1 218 80.3
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 2.1e-99 366.7 221 83.7
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 2.1e-99 366.7 389 77.6
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 2.8e-99 366.3 378 79.1
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 2.8e-99 366.3 378 79.1
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 2.8e-99 366.3 222 81.1
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 2.8e-99 366.3 224 82.1
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 2.8e-99 366.3 396 78.0
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 3.7e-99 365.9 221 81.0
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 4.8e-99 365.5 394 81.2
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 6.3e-99 365.2 391 81.1
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 6.3e-99 365.2 379 84.4
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 1.4e-98 364.0 222 81.5
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 1.8e-98 363.6 222 80.2
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 2.4e-98 363.2 190 88.4
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 2.4e-98 363.2 384 82.3
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 3.1e-98 362.8 381 79.5
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 4.1e-98 362.5 190 88.4
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 4.1e-98 362.5 190 89.5
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 4.1e-98 362.5 190 87.9
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 5.3e-98 362.1 382 82.7
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 1.2e-97 360.9 190 87.9
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 1.5e-97 360.5 190 87.9
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 1.5e-97 360.5 188 89.4
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 3.4e-97 359.4 402 72.4
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 5.9e-97 358.6 190 86.8
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 1.3e-96 357.5 437 75.3
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 2.2e-96 356.7 190 89.5
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 3.8e-96 355.9 437 73.9
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 1.1e-95 354.4 190 87.4
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 1.1e-95 354.4 190 88.4
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.1e-95 354.4 190 87.9
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 9.3e-95 351.3 190 86.8
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 1.2e-94 350.9 190 86.3
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 1.6e-94 350.5 401 62.6
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 6.1e-94 348.6 394 54.6
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 7.9e-94 348.2 190 86.3
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 3.0e-93 346.3 213 81.2
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 3.0e-93 346.3 213 81.2
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 5.1e-93 345.5 213 77.5
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 1.1e-92 344.4 197 83.8
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 3.3e-92 342.8 190 84.7
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 7.4e-92 341.7 190 84.2
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 4.1e-90 335.9 218 75.7
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 4.1e-90 335.9 211 77.7
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 9.1e-90 334.7 190 83.7
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 9.1e-90 334.7 190 82.1
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 1.5e-89 334.0 191 80.6
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 5.9e-89 332.0 213 76.5
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 1.0e-88 331.3 389 77.1
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 2.1e-86 323.6 222 72.1
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 4.6e-86 322.4 266 62.8
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 3.0e-85 319.7 190 78.9
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.5e-84 317.4 167 89.2
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 1.7e-83 313.9 185 78.9
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 2.8e-83 313.2 200 76.5
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 1.8e-82 310.5 190 76.8
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 2.4e-82 310.1 389 49.4
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 2.5e-79 300.1 222 72.5
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.0e-77 294.7 389 44.5
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 2.1e-70 270.4 324 81.2
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 4.7e-70 269.2 190 62.1
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 1.4e-66 257.7 212 65.1
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 2.5e-55 220.3 185 54.6
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 4.7e-54 216.1 184 56.5
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 4.5e-49 199.5 239 46.9
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 2.5e-47 193.7 97 92.8
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 3.6e-46 189.9 126 76.2
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 1.7e-43 181.0 123 70.7
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 5.4e-42 176.0 94 86.2
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 1.3e-24 118.2 109 56.0
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 1.6e-22 111.3 85 70.6
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 4.7e-22 109.8 70 71.4
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 4.7e-22 109.8 70 71.4
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 1.7e-16 91.3 60 73.3
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 6.9e-13 79.3 53 60.4
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 1.2e-12 78.6 69 58.0
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 5.4e-10 69.7 42 76.2
BcaB06g29165 Brassica carinata HOM05D011401 ORTHO05D018605 9.6e-07 58.9 132 35.6
ATR0693G223 Amborella trichopoda HOM05D005421 ORTHO05D031077 1.6e-06 58.2 27 96.3
BcaB06g29163 Brassica carinata HOM05D005421 ORTHO05D031077 2.8e-06 57.4 60 61.7
Oeu029357.1 Olea europaea HOM05D005421 ORTHO05D026565 2.8e-06 57.4 53 60.4


User provided reference genes

Program Settings