Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 0.0e+00 1090.5 535 100.0
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 5.1e-288 993.8 540 91.3
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 1.4e-240 836.3 539 76.8
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 2.6e-236 822.0 563 73.4
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 1.0e-235 820.1 537 76.2
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 1.7e-235 819.3 539 74.0
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 8.5e-235 817.0 541 76.3
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 1.2e-233 813.1 539 75.7
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 1.0e-232 810.1 540 74.6
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 2.3e-232 808.9 539 75.1
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 1.3e-230 803.1 543 73.5
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 1.7e-230 802.7 531 75.0
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 8.2e-230 800.4 541 74.5
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 1.8e-229 799.3 568 71.7
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 1.2e-228 796.6 539 73.1
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 4.5e-228 794.7 552 72.3
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 5.9e-228 794.3 544 73.9
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 5.9e-228 794.3 543 71.8
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 3.8e-227 791.6 547 71.3
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 1.1e-226 790.0 543 72.4
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 9.4e-226 786.9 495 78.6
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 1.8e-224 782.7 581 68.0
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 3.0e-224 781.9 570 70.2
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 5.2e-224 781.2 539 72.0
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 5.2e-224 781.2 540 72.0
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 7.5e-223 777.3 540 70.9
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 2.4e-221 772.3 543 70.7
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 3.1e-221 771.9 537 71.3
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 5.4e-221 771.2 539 70.9
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 1.2e-220 770.0 541 70.6
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 1.6e-220 769.6 539 71.1
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 5.9e-220 767.7 538 71.0
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 1.9e-218 762.7 540 70.6
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 4.2e-218 761.5 543 69.2
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 5.5e-218 761.1 538 70.3
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 4.7e-217 758.1 538 69.9
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 1.0e-216 756.9 547 68.4
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 4.4e-215 751.5 550 70.4
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 1.1e-213 746.9 530 71.5
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 1.7e-211 739.6 539 68.6
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 1.7e-211 739.6 538 70.3
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 6.8e-208 727.6 536 66.0
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 2.6e-207 725.7 538 67.8
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 7.5e-207 724.2 538 68.0
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 6.4e-206 721.1 538 67.8
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 2.4e-205 719.2 537 67.0
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 3.2e-205 718.8 541 68.2
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 4.1e-205 718.4 534 67.4
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 5.4e-205 718.0 533 67.4
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 2.0e-204 716.1 533 67.2
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 2.7e-204 715.7 543 66.7
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 3.5e-204 715.3 541 68.4
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 3.5e-204 715.3 513 71.0
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 3.0e-203 712.2 538 66.4
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 3.0e-203 712.2 528 66.7
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 8.6e-203 710.7 542 66.8
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 3.3e-202 708.8 538 67.3
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 2.8e-201 705.7 535 66.7
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 3.6e-201 705.3 559 64.8
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 2.3e-200 702.6 537 65.9
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 2.3e-200 702.6 537 65.9
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 3.1e-200 702.2 551 65.7
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 4.0e-200 701.8 537 65.9
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 4.0e-200 701.8 541 66.5
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 6.8e-200 701.0 537 66.9
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 3.7e-198 695.3 539 63.1
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 4.1e-197 691.8 537 65.5
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 4.1e-197 691.8 508 67.3
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 1.2e-196 690.3 539 65.1
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 6.0e-196 688.0 536 65.7
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 1.0e-195 687.2 538 64.1
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 1.5e-194 683.3 541 63.0
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 1.2e-193 680.2 514 66.9
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 1.4e-192 676.8 541 64.1
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 2.6e-191 672.5 500 67.6
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 1.0e-187 660.6 486 69.1
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 1.7e-187 659.8 557 62.5
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 1.5e-186 656.8 603 58.2
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 1.3e-171 607.1 531 55.7
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 3.6e-169 599.0 536 56.5
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 1.1e-165 587.4 541 56.9
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 1.6e-164 583.6 543 56.2
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 1.6e-164 583.6 546 57.7
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 3.3e-162 575.9 536 55.6
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 4.3e-162 575.5 590 52.2
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 1.3e-161 573.9 530 56.2
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 2.1e-161 573.2 535 53.1
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 2.3e-155 553.1 637 51.2
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 9.6e-154 547.7 530 52.8
Lalb_Chr22g0353691 Lupinus albus HOM05D006175 ORTHO05D008081 8.7e-147 524.6 293 81.6
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 4.3e-146 522.3 560 51.8
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 4.3e-146 522.3 532 50.4
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 3.7e-137 492.7 527 46.5
HanXRQChr05g0129731 Helianthus annuus HOM05D006175 ORTHO05D008081 1.2e-132 477.6 292 77.1
Rhsim06G0000100 Rhododendron simsii HOM05D006175 ORTHO05D008081 6.3e-129 465.3 292 72.9
HanXRQChr11g0338981 Helianthus annuus HOM05D006175 ORTHO05D008081 1.1e-128 464.5 293 75.8
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 2.4e-120 436.8 565 45.0
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 7.0e-120 435.3 563 47.2
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 2.6e-119 433.3 444 53.6
FAN18G1603 Fragaria x ananassa HOM05D006175 ORTHO05D008081 3.6e-116 422.9 244 82.0
Glyma.09G169100 Glycine max HOM05D006175 ORTHO05D008081 2.4e-104 383.6 303 63.7
AL4G26880 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 1.3e-89 334.7 370 50.8
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 5.0e-86 322.8 629 32.1
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 7.5e-74 282.3 223 66.8
Cre10.g424200 Chlamydomonas reinhardtii HOM05D006175 ORTHO05D008081 1.4e-72 278.1 495 34.5
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 7.1e-64 249.2 219 62.6
VMungo1215G0683 Vigna mungo HOM05D006175 ORTHO05D008081 2.1e-63 247.7 220 56.8
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 2.5e-61 240.7 219 60.7
PRCOL_00003367 Prasinoderma coloniale HOM05D006175 ORTHO05D008081 1.2e-60 238.4 572 29.9
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.8e-59 234.6 219 59.4
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.5e-58 231.5 219 58.4
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 7.6e-58 229.2 219 58.0
AUR62043421 Chenopodium quinoa HOM05D006175 ORTHO05D008081 1.1e-56 225.3 170 62.9
CDE04G1443 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 6.4e-49 199.5 104 84.6
CDE04G2185 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 4.3e-37 160.2 85 82.4
Ca_23674_v3 Cicer arietinum L. HOM05D006175 ORTHO05D008081 3.4e-34 150.6 130 60.8
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 8.4e-33 146.0 136 58.8
CDE04G3312 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 5.3e-27 126.7 306 30.7
Cfa025039 Carpinus fangiana HOM05D006175 ORTHO05D008081 3.3e-21 107.5 432 25.2
Thecc.04G242900 Theobroma cacao HOM05D006175 ORTHO05D008081 1.3e-17 95.5 48 91.7
CDE04G3394 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.8e-14 85.1 115 49.6
CSS0024377 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D043346 5.1e-14 83.6 52 78.8
BcaC05g28616 Brassica carinata HOM05D002760 ORTHO05D001361 1.4e-08 65.5 31 83.9
A07p06810 Brassica napus HOM05D002760 ORTHO05D003169 1.4e-08 65.5 31 83.9
BNapus_Darmor_BZH_scaffold_38p01460 Brassica napus HOM05D002760 ORTHO05D003169 1.4e-08 65.5 31 83.9
BraA03t12607Z Brassica rapa HOM05D002760 ORTHO05D003169 1.4e-08 65.5 31 83.9
Gorai.009G404500 Gossypium raimondii HOM05D006175 ORTHO05D047312 1.9e-08 65.1 60 60.0
C05p47240 Brassica napus HOM05D002760 ORTHO05D003169 4.2e-08 63.9 31 80.6
Gohir.D04G101160 Gossypium hirsutum HOM05D006175 ORTHO05D047312 5.5e-08 63.5 56 62.5
TPR.G28017 Trifolium pratense HOM05D006175 ORTHO05D008081 5.5e-08 63.5 119 37.8
Nn2g11046 Nelumbo nucifera HOM05D006175 ORTHO05D008081 2.7e-07 61.2 51 56.9


User provided reference genes

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