Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 2.6e-95 352.4 234 100.0
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 7.3e-90 334.3 241 94.6
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 5.5e-69 265.0 239 82.4
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 8.7e-67 257.7 238 81.9
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 1.9e-66 256.5 238 79.8
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 4.3e-66 255.4 237 81.9
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 7.4e-66 254.6 234 81.2
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 8.1e-65 251.1 239 79.5
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 2.4e-64 249.6 238 80.3
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 2.4e-64 249.6 237 77.6
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 1.2e-63 247.3 238 79.8
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 2.2e-62 243.0 227 81.1
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 6.5e-62 241.5 234 77.8
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 8.4e-62 241.1 233 78.5
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 8.4e-62 241.1 233 78.5
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 1.1e-61 240.7 225 80.4
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 1.1e-61 240.7 254 75.2
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 2.5e-61 239.6 233 78.5
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 1.2e-60 237.3 240 76.7
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 1.2e-60 237.3 237 78.5
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 1.6e-60 236.9 215 83.7
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 2.7e-60 236.1 231 77.9
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.5e-60 235.7 236 78.0
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 4.6e-60 235.3 238 74.8
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 4.6e-60 235.3 239 65.3
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 6.0e-60 235.0 222 80.6
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 7.9e-60 234.6 236 77.5
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 1.0e-59 234.2 234 76.5
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 1.3e-59 233.8 234 76.5
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 2.3e-59 233.0 238 76.1
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 2.3e-59 233.0 240 77.9
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 3.0e-59 232.6 239 75.7
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 3.9e-59 232.3 238 75.6
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 6.7e-59 231.5 234 73.9
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 1.9e-58 229.9 223 79.4
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 2.5e-58 229.6 228 78.1
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 4.3e-58 228.8 233 76.8
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 5.7e-58 228.4 239 76.6
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 5.7e-58 228.4 262 59.2
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 9.6e-58 227.6 228 77.2
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.3e-57 227.3 230 78.3
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 6.3e-57 224.9 220 80.0
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 1.4e-56 223.8 239 74.1
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 2.4e-56 223.0 240 73.8
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 4.1e-56 222.2 240 75.8
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 6.9e-56 221.5 212 83.0
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 9.0e-56 221.1 236 73.7
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 1.2e-55 220.7 238 75.2
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 2.0e-55 219.9 239 72.8
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 3.4e-55 219.2 198 85.9
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 1.3e-54 217.2 206 80.6
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.7e-54 216.9 194 87.1
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 1.7e-54 216.9 241 73.9
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 3.8e-54 215.7 235 74.5
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 8.5e-54 214.5 233 76.0
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 1.1e-53 214.2 213 82.2
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.2e-53 212.6 239 73.6
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 3.2e-53 212.6 206 80.1
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 5.5e-53 211.8 230 76.1
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 7.2e-53 211.5 194 86.1
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 7.2e-53 211.5 184 87.0
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 1.2e-52 210.7 239 73.6
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 1.2e-52 210.7 239 73.6
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 1.2e-52 210.7 155 69.7
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 1.6e-52 210.3 194 85.6
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 1.6e-52 210.3 238 72.7
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 2.1e-52 209.9 240 71.7
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 2.1e-52 209.9 238 73.5
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 2.7e-52 209.5 144 74.3
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 2.7e-52 209.5 198 83.8
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 6.1e-52 208.4 246 69.5
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 7.9e-52 208.0 214 78.0
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 7.9e-52 208.0 237 73.0
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.9e-51 205.7 194 58.2
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 6.7e-51 204.9 227 64.8
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 8.7e-51 204.5 197 80.7
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 3.3e-50 202.6 183 82.5
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 5.7e-50 201.8 242 73.6
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 5.7e-50 201.8 198 82.3
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 7.4e-50 201.4 240 71.2
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 9.7e-50 201.1 192 83.3
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 9.7e-50 201.1 201 80.1
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 1.6e-49 200.3 229 74.7
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 2.2e-49 199.9 226 73.0
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 3.7e-49 199.1 201 80.1
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 4.8e-49 198.7 194 67.5
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 4.8e-49 198.7 183 84.7
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.1e-48 197.6 237 72.6
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 1.8e-48 196.8 241 68.5
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 1.5e-47 193.7 190 83.2
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 4.5e-47 192.2 215 74.4
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 4.5e-47 192.2 228 70.6
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 7.7e-47 191.4 201 77.6
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 1.0e-46 191.0 198 79.3
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 1.3e-46 190.7 208 53.8
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 1.3e-46 190.7 208 53.8
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 2.9e-46 189.5 201 77.6
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 3.8e-46 189.1 201 77.6
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 3.8e-46 189.1 201 77.6
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.5e-46 188.3 194 55.7
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 8.5e-46 188.0 180 83.3
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 1.1e-45 187.6 205 76.6
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 1.9e-45 186.8 203 75.4
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 2.5e-45 186.4 239 68.2
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.6e-44 183.7 132 71.2
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.7e-44 183.0 132 71.2
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.7e-44 183.0 132 71.2
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.0e-43 181.0 130 68.5
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.8e-43 180.3 132 69.7
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 3.0e-43 179.5 184 81.0
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 3.9e-43 179.1 125 72.0
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.1e-43 178.7 132 69.7
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.5e-42 177.2 133 69.2
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.5e-42 177.2 237 68.4
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 1.4e-40 170.6 216 69.0
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 1.8e-40 170.2 166 86.7
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.8e-40 170.2 157 90.4
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.8e-40 170.2 234 47.9
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.1e-40 169.5 158 88.6
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 1.2e-39 167.5 238 61.8
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.9e-38 162.9 237 47.7
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 1.5e-34 150.6 240 62.9
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 9.7e-34 147.9 102 71.6
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 1.4e-32 144.1 206 61.7
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.8e-32 143.7 77 88.3
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 4.1e-32 142.5 101 70.3
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 2.0e-31 140.2 156 78.8
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 2.1e-20 103.6 64 73.4
Cpa.g.sc3.109 Carica papaya HOM05D005832 ORTHO05D007117 2.9e-14 83.2 68 64.7
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 5.0e-14 82.4 115 81.7
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 8.8e-11 71.6 180 38.3
FAN01G3091 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.7e-09 67.4 92 45.7


User provided reference genes

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