Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0140700 Salix brachista HOM05D004315 ORTHO05D005089 3.9e-232 807.7 400 100.0
Sabra16G0316700 Salix brachista HOM05D004315 ORTHO05D005089 4.3e-191 671.4 400 85.5
Potri.011G164500 Populus trichocarpa HOM05D004315 ORTHO05D005089 8.4e-187 657.1 400 84.5
Potri.001G466900 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.0e-184 650.2 400 83.8
Cfa000809 Carpinus fangiana HOM05D004315 ORTHO05D005089 8.5e-147 524.2 402 69.9
Cpa.g.sc1123.2 Carica papaya HOM05D004315 ORTHO05D005089 3.0e-144 515.8 374 72.2
CiPaw.10G109400 Carya illinoinensis HOM05D004315 ORTHO05D005089 7.5e-143 511.1 402 67.7
TAR629G1010 Trochodendron aralioides HOM05D004315 ORTHO05D005089 2.2e-142 509.6 371 72.0
CANSAT35G0713 Cannabis sativa HOM05D004315 ORTHO05D005089 1.0e-139 500.7 393 66.9
vmacro03380 Vaccinium macrocarpon HOM05D004315 ORTHO05D005089 1.0e-139 500.7 386 69.2
Dinv05044 Davidia involucrata HOM05D004315 ORTHO05D005089 3.8e-139 498.8 360 71.4
GSVIVG01020802001 Vitis vinifera HOM05D004315 ORTHO05D005089 5.0e-139 498.4 367 70.6
Oeu015176.1 Olea europaea HOM05D004315 ORTHO05D005089 6.5e-139 498.0 373 70.0
GSVIVG01021661001 Vitis vinifera HOM05D004315 ORTHO05D005089 1.1e-138 497.3 368 72.0
AT1G30540 Arabidopsis thaliana HOM05D004315 ORTHO05D005089 1.5e-138 496.9 383 68.1
CSS0023242 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 1.5e-138 496.9 370 71.1
Nn3g20219 Nelumbo nucifera HOM05D004315 ORTHO05D005089 9.4e-138 494.2 368 69.8
Oeu041105.1 Olea europaea HOM05D004315 ORTHO05D005089 2.1e-137 493.0 369 68.8
BcaC05g27075 Brassica carinata HOM05D004315 ORTHO05D005089 8.0e-137 491.1 382 67.3
Eucgr.A00888 Eucalyptus grandis HOM05D004315 ORTHO05D005089 8.0e-137 491.1 364 68.7
PSO675G7088 Papaver somniferum HOM05D004315 ORTHO05D005089 1.0e-136 490.7 368 70.1
Lj2A329G54 Lonicera japonica HOM05D004315 ORTHO05D005089 1.4e-136 490.3 370 70.0
Aa31LG10G6590 Aethionema arabicum HOM05D004315 ORTHO05D005089 1.8e-136 490.0 400 64.2
Oeu044867.2 Olea europaea HOM05D004315 ORTHO05D005089 1.8e-136 490.0 369 69.1
Aqoxy1G01576 Aquilegia oxysepala HOM05D004315 ORTHO05D005089 3.0e-136 489.2 380 68.9
AL1G44580 Arabidopsis lyrata HOM05D004315 ORTHO05D005089 6.8e-136 488.0 383 67.4
Carub.0001s2880 Capsella rubella HOM05D004315 ORTHO05D005089 6.8e-136 488.0 365 69.6
Thhalv10008046m.g Eutrema salsugineum HOM05D004315 ORTHO05D005089 6.8e-136 488.0 389 66.8
ATR0165G021 Amborella trichopoda HOM05D004315 ORTHO05D005089 8.8e-136 487.6 375 68.8
MBI02_g32064_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 8.8e-136 487.6 360 70.6
RcHm_v2.0_Chr2g0152961 Rosa chinensis HOM05D004315 ORTHO05D005089 8.8e-136 487.6 362 68.8
TWI14G0586 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.2e-135 487.3 363 69.4
BolC5t31687H Brassica oleracea HOM05D004315 ORTHO05D005089 2.0e-135 486.5 383 67.1
MBI18_g11296_MAGBIO Magnolia biondii HOM05D004315 ORTHO05D005089 2.0e-135 486.5 372 68.5
BcaB07g32690 Brassica carinata HOM05D004315 ORTHO05D005089 3.4e-135 485.7 383 67.1
CSS0039894 Camellia sinensis var. sinensis HOM05D004315 ORTHO05D005089 5.7e-135 485.0 360 69.2
Thecc.01G165100 Theobroma cacao HOM05D004315 ORTHO05D005089 7.5e-135 484.6 363 70.2
C05p29560 Brassica napus HOM05D004315 ORTHO05D005089 1.3e-134 483.8 383 66.6
Rhsim13G0121900 Rhododendron simsii HOM05D004315 ORTHO05D005089 1.3e-134 483.8 393 66.4
SalBow8G0183 Salvia bowleyana HOM05D004315 ORTHO05D005089 1.7e-134 483.4 371 66.0
Gorai.012G039600 Gossypium raimondii HOM05D004315 ORTHO05D005089 2.8e-134 482.6 362 69.6
Atru.chr10.841 Acer truncatum HOM05D004315 ORTHO05D005089 3.7e-134 482.3 351 72.6
Duzib264G0097 Durio zibethinus HOM05D004315 ORTHO05D005089 3.7e-134 482.3 359 70.8
MD09G1144800 Malus domestica HOM05D004315 ORTHO05D005089 3.7e-134 482.3 360 68.9
Migut.M01899 Erythranthe guttata HOM05D004315 ORTHO05D005089 4.9e-134 481.9 371 67.9
SGA_v2.0_scaffold223G42867 Striga asiatica HOM05D004315 ORTHO05D005089 4.9e-134 481.9 378 66.1
A09p35900 Brassica napus HOM05D004315 ORTHO05D005089 6.3e-134 481.5 383 66.6
MD17G1131300 Malus domestica HOM05D004315 ORTHO05D005089 6.3e-134 481.5 361 68.4
MSTRG.16294 Avicennia marina HOM05D004315 ORTHO05D005089 8.3e-134 481.1 374 67.4
Gohir.A05G380500 Gossypium hirsutum HOM05D004315 ORTHO05D005089 8.3e-134 481.1 362 69.6
CARHR029950 Cardamine hirsuta HOM05D004315 ORTHO05D005089 1.1e-133 480.7 382 66.2
FAN05G3231 Fragaria x ananassa HOM05D004315 ORTHO05D005089 1.1e-133 480.7 362 68.2
TWI59G1372 Tripterygium wilfordii HOM05D004315 ORTHO05D005089 1.1e-133 480.7 364 68.1
Hma1.2p1_0583F.1_g183050 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 1.4e-133 480.3 360 68.3
Sp1g26410 Schrenkiella parvula HOM05D004315 ORTHO05D005089 1.4e-133 480.3 394 66.2
arahy.Tifrunner.gnm1.ann1.VQL6P1 Arachis hypogaea HOM05D004315 ORTHO05D005089 1.8e-133 479.9 365 68.2
FvH4_6g39150 Fragaria vesca HOM05D004315 ORTHO05D005089 3.1e-133 479.2 362 68.0
FAN14G1093 Fragaria x ananassa HOM05D004315 ORTHO05D005089 3.1e-133 479.2 362 68.0
Prupe.3G183100 Prunus persica HOM05D004315 ORTHO05D005089 4.1e-133 478.8 363 67.8
BraA09t39115Z Brassica rapa HOM05D004315 ORTHO05D005089 9.2e-133 477.6 383 66.3
Potri.014G143500 Populus trichocarpa HOM05D004315 ORTHO05D005089 1.2e-132 477.2 369 67.5
QL05p061983 Quercus lobata HOM05D004315 ORTHO05D005089 1.6e-132 476.9 555 50.8
PGR031G0720 Punica granatum HOM05D004315 ORTHO05D005089 2.7e-132 476.1 367 69.2
arahy.Tifrunner.gnm1.ann1.8V1VF7 Arachis hypogaea HOM05D004315 ORTHO05D005089 3.5e-132 475.7 365 67.9
Ciclev10031991m.g Citrus clementina HOM05D004315 ORTHO05D005089 3.5e-132 475.7 357 68.9
DCAR_013332 Daucus carota HOM05D004315 ORTHO05D005089 4.5e-132 475.3 371 66.8
Dinv10789 Davidia involucrata HOM05D004315 ORTHO05D005089 1.7e-131 473.4 352 71.6
ClCG07G010830 Citrullus lanatus HOM05D004315 ORTHO05D005089 2.3e-131 473.0 389 64.0
TPR.G24734 Trifolium pratense HOM05D004315 ORTHO05D005089 2.3e-131 473.0 396 63.9
CiPaw.03G190700 Carya illinoinensis HOM05D004315 ORTHO05D005089 6.6e-131 471.5 364 67.0
Glyma.02G281300 Glycine max HOM05D004315 ORTHO05D005089 6.6e-131 471.5 375 66.1
Nitab4.5_0001843g0170 Nicotiana tabacum HOM05D004315 ORTHO05D005089 8.6e-131 471.1 369 66.9
Cc09_g07890 Coffea canephora HOM05D004315 ORTHO05D005089 1.1e-130 470.7 365 67.1
Cc05_g00540 Coffea canephora HOM05D004315 ORTHO05D005089 1.9e-130 469.9 372 66.9
PGSC0003DMG400021156 Solanum tuberosum HOM05D004315 ORTHO05D005089 1.9e-130 469.9 374 66.0
Lsat_1_v5_gn_1_91760 Lactuca sativa HOM05D004315 ORTHO05D005089 5.6e-130 468.4 400 62.8
Psat2g018080 Pisum sativum HOM05D004315 ORTHO05D005089 5.6e-130 468.4 361 67.3
Nitab4.5_0000076g0250 Nicotiana tabacum HOM05D004315 ORTHO05D005089 1.2e-129 467.2 373 67.0
CANSAT64G0449 Cannabis sativa HOM05D004315 ORTHO05D005089 3.6e-129 465.7 360 68.9
Sopen07g023340 Solanum pennellii HOM05D004315 ORTHO05D005089 4.7e-129 465.3 369 66.1
LjContig00049g0028236 Lotus japonicus HOM05D004315 ORTHO05D005089 8.0e-129 464.5 365 65.8
Lalb_Chr10g0106401 Lupinus albus HOM05D004315 ORTHO05D005089 8.0e-129 464.5 366 65.0
Medtr5g090130 Medicago truncatula HOM05D004315 ORTHO05D005089 8.0e-129 464.5 370 66.8
PSO541G6471 Papaver somniferum HOM05D004315 ORTHO05D005089 8.0e-129 464.5 345 69.9
THA.LOC104798598 Tarenaya hassleriana HOM05D004315 ORTHO05D005089 1.0e-128 464.2 420 60.2
ECA248G0068 Erigeron canadensis HOM05D004315 ORTHO05D005089 3.0e-128 462.6 374 65.2
Solyc07g044750.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 3.0e-128 462.6 369 65.9
Lsat_1_v5_gn_2_30700 Lactuca sativa HOM05D004315 ORTHO05D005089 4.0e-128 462.2 367 65.4
CDE05G3605 Ceratophyllum demersum HOM05D003391 ORTHO05D005563 5.2e-128 461.8 368 65.5
Solyc02g023980.3 Solanum lycopersicum HOM05D004315 ORTHO05D005089 5.2e-128 461.8 403 63.5
HanXRQChr01g0023901 Helianthus annuus HOM05D004315 ORTHO05D005089 1.5e-127 460.3 380 65.3
Peaxi162Scf00351g00818 Petunia axillaris HOM05D004315 ORTHO05D005089 2.0e-127 459.9 369 65.0
CAN.G1316.2 Capsicum annuum HOM05D004315 ORTHO05D005089 5.7e-127 458.4 367 65.7
CAN.G304.4 Capsicum annuum HOM05D004315 ORTHO05D005089 7.5e-127 458.0 369 67.2
Sabra14G0108500 Salix brachista HOM05D004315 ORTHO05D005089 7.5e-127 458.0 384 64.6
MELO3C016194.2 Cucumis melo HOM05D004315 ORTHO05D005089 1.3e-126 457.2 389 63.0
Phvul.008G199600 Phaseolus vulgaris HOM05D004315 ORTHO05D005089 1.7e-126 456.8 375 64.8
COL.COLO4_29897 Corchorus olitorius HOM05D004315 ORTHO05D005089 4.9e-126 455.3 343 70.0
CsaV3_4G007480 Cucumis sativus L. HOM05D004315 ORTHO05D005089 6.4e-126 454.9 357 66.4
MELO3C026388.2 Cucumis melo HOM05D004315 ORTHO05D005089 8.3e-126 454.5 381 64.0
Gohir.D04G035100 Gossypium hirsutum HOM05D004315 ORTHO05D005089 1.1e-125 454.1 341 69.2
VMungo0647G0619 Vigna mungo HOM05D004315 ORTHO05D005089 1.1e-125 454.1 375 64.0
Migut.H01268 Erythranthe guttata HOM05D004315 ORTHO05D005089 2.4e-125 453.0 369 64.0
unitig_37.g12072 Utricularia gibba HOM05D004315 ORTHO05D005089 4.1e-125 452.2 374 62.3
DCAR_007839 Daucus carota HOM05D004315 ORTHO05D005089 7.0e-125 451.4 356 67.7
Sed0001791 Sechium edule HOM05D004315 ORTHO05D005089 9.2e-125 451.1 370 63.8
HanXRQChr14g0432981 Helianthus annuus HOM05D004315 ORTHO05D005089 1.2e-124 450.7 359 65.2
Peaxi162Scf00395g00318 Petunia axillaris HOM05D004315 ORTHO05D005089 3.5e-124 449.1 364 65.7
HanXRQChr04g0115031 Helianthus annuus HOM05D004315 ORTHO05D005089 4.6e-124 448.7 382 62.6
Ah.09g232250 Amaranthus hybridus HOM05D004315 ORTHO05D005089 1.3e-123 447.2 365 63.8
BcaB07g32692 Brassica carinata HOM05D004315 ORTHO05D005089 1.7e-123 446.8 387 63.6
ClCG11G016660 Citrullus lanatus HOM05D004315 ORTHO05D005089 1.7e-123 446.8 427 58.1
Nitab4.5_0006724g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 3.0e-123 446.0 350 66.6
Os09g0133700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 1.8e-120 436.8 368 62.5
Nitab4.5_0011274g0010 Nicotiana tabacum HOM05D004315 ORTHO05D005089 8.9e-120 434.5 348 66.7
Zm00001eb261810 Zea mays HOM05D004315 ORTHO05D005089 4.4e-119 432.2 367 62.1
PGSC0003DMG401028079 Solanum tuberosum HOM05D004315 ORTHO05D005089 9.8e-119 431.0 350 66.3
HPP92_005880 Vanilla planifolia HOM05D004315 ORTHO05D005089 2.2e-118 429.9 388 59.8
Os07g0147700 Oryza sativa ssp. japonica HOM05D004315 ORTHO05D005089 4.9e-118 428.7 359 63.8
Manes.02G090600 Manihot esculenta HOM05D004315 ORTHO05D005089 8.3e-118 427.9 293 74.1
Zm00001eb299940 Zea mays HOM05D004315 ORTHO05D005089 8.3e-118 427.9 359 63.0
Lj1A584G30 Lonicera japonica HOM05D004315 ORTHO05D005089 1.4e-117 427.2 375 62.1
SEGI_10868 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 4.1e-117 425.6 362 63.5
Actinidia12522 Actinidia chinensis HOM05D004315 ORTHO05D005089 6.0e-116 421.8 378 61.4
Duzib147G0966 Durio zibethinus HOM05D004315 ORTHO05D005089 6.4e-110 401.7 363 59.2
SHI10516 Sapria himalayana HOM05D004315 ORTHO05D005089 2.1e-108 396.7 349 60.2
BcaB07g32666 Brassica carinata HOM05D004315 ORTHO05D005089 2.3e-107 393.3 385 58.7
Glyma.14G033300 Glycine max HOM05D004315 ORTHO05D005089 1.1e-104 384.4 293 68.6
Atru.chr6.2011 Acer truncatum HOM05D004315 ORTHO05D005089 3.1e-104 382.9 287 69.3
CsaV3_4G032170 Cucumis sativus L. HOM05D004315 ORTHO05D005089 9.2e-101 371.3 367 56.1
Sed0020733 Sechium edule HOM05D004315 ORTHO05D005089 9.2e-101 371.3 318 65.1
Haze_05864 Corylus avellana HOM05D004315 ORTHO05D005089 1.2e-95 354.4 315 61.6
Manes.14G123700 Manihot esculenta HOM05D004315 ORTHO05D005089 6.4e-94 348.6 284 64.1
Mapoly0122s0046 Marchantia polymorpha HOM05D004315 ORTHO05D005089 2.5e-90 336.7 375 50.7
Lsat_1_v5_gn_1_77721 Lactuca sativa HOM05D004315 ORTHO05D005089 6.2e-89 332.0 260 66.5
SMO334G0132 Selaginella moellendorffii HOM05D004315 ORTHO05D005089 4.0e-88 329.3 358 50.6
Haze_05859 Corylus avellana HOM05D004315 ORTHO05D005089 1.5e-87 327.4 379 51.5
Hma1.2p1_0067F.1_g036960 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 2.1e-84 317.0 238 69.7
Sopen02g006690 Solanum pennellii HOM05D004315 ORTHO05D005089 4.3e-82 309.3 238 69.3
Actinidia01578 Actinidia chinensis HOM05D004315 ORTHO05D005089 2.8e-81 306.6 251 66.1
Sc10g0005420 Simmondsia chinensis HOM05D004315 ORTHO05D005089 2.9e-78 296.6 251 64.5
Pp3c17_6390 Physcomitrium patens HOM05D004315 ORTHO05D005089 3.2e-77 293.1 323 50.5
Haze_13622 Corylus avellana HOM05D004315 ORTHO05D005089 4.3e-66 256.1 191 69.1
QL05p062039 Quercus lobata HOM05D004315 ORTHO05D005089 4.3e-66 256.1 218 62.8
Cfa023542 Carpinus fangiana HOM05D004315 ORTHO05D005089 1.8e-64 250.8 175 72.0
Hund21564 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.5e-63 247.7 188 67.6
CBR_g20100 Chara braunii HOM05D004315 ORTHO05D005089 2.0e-63 247.3 417 38.6
Actinidia33709 Actinidia chinensis HOM05D004315 ORTHO05D005089 3.4e-63 246.5 167 76.0
Hund21563 Selenicereus undatus HOM05D004315 ORTHO05D005089 1.9e-58 230.7 167 67.7
Zm00001eb058170 Zea mays HOM05D004315 ORTHO05D005089 8.5e-54 215.3 168 66.7
AagrBONN_evm.TU.Sc2ySwM_117.2193 Anthoceros agrestis HOM05D004315 ORTHO05D005089 3.9e-43 179.9 290 41.0
Manes.01G131701 Manihot esculenta HOM05D004315 ORTHO05D005089 3.9e-43 179.9 131 70.2
TPR.G1178 Trifolium pratense HOM05D003586 ORTHO05D004036 5.2e-43 179.5 193 52.3
PRCOL_00003495 Prasinoderma coloniale HOM05D004315 ORTHO05D005089 3.5e-39 166.8 363 35.5
Manes.01G131702 Manihot esculenta HOM05D004315 ORTHO05D005089 9.7e-34 148.7 112 69.6
QL04p059944 Quercus lobata HOM05D004315 ORTHO05D005089 3.0e-27 127.1 75 81.3
SEGI_40766 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 9.1e-24 115.5 151 47.0
Pp3s34_420 Physcomitrium patens HOM05D000198 ORTHO05D309562 1.0e-22 112.1 324 29.9
MCO07G054 Micromonas commoda HOM05D004315 ORTHO05D005089 3.8e-22 110.2 421 28.0
Cre17.g720528 Chlamydomonas reinhardtii HOM05D004315 ORTHO05D005089 3.2e-21 107.1 296 29.1
Atru.chr6.2012 Acer truncatum HOM05D004315 ORTHO05D005089 9.8e-18 95.5 69 65.2
Hma1.2p1_0067F.1_g036930 Hydrangea macrophylla HOM05D004315 ORTHO05D005089 9.8e-18 95.5 57 77.2
TAR624G0620 Trochodendron aralioides HOM05D004315 ORTHO05D005089 1.7e-17 94.7 88 58.0
SEGI_21833 Sequoiadendron giganteum HOM05D004315 ORTHO05D005089 4.9e-17 93.2 156 39.7
Cfa023541 Carpinus fangiana HOM05D004315 ORTHO05D005089 3.5e-15 87.0 56 80.4
DCAR_009744 Daucus carota HOM05D004315 ORTHO05D018839 3.5e-15 87.0 100 50.0
Ah.03g146620 Amaranthus hybridus HOM05D004315 ORTHO05D005089 7.5e-10 69.3 80 51.2
CDE04G1567 Ceratophyllum demersum HOM05D001307 ORTHO05D005089 1.7e-06 58.2 53 52.8


User provided reference genes

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