Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 1.7e-67 259.2 133 100.0
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 4.3e-55 218.0 142 84.5
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 8.5e-51 203.8 142 76.8
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 3.5e-44 181.8 142 71.1
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.7e-43 179.5 143 69.2
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 2.9e-43 178.7 138 68.8
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 5.0e-43 177.9 142 71.8
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 2.5e-42 175.6 140 71.4
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 9.4e-42 173.7 140 71.4
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 1.6e-41 172.9 140 72.1
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 2.1e-41 172.6 140 71.4
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 2.1e-41 172.6 140 71.4
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 2.1e-41 172.6 143 67.1
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 2.7e-41 172.2 142 67.6
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 2.7e-41 172.2 140 70.7
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 3.6e-41 171.8 139 71.2
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 6.1e-41 171.0 140 68.6
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 8.0e-41 170.6 140 70.7
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 1.0e-40 170.2 136 67.6
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 1.4e-40 169.9 138 68.8
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 1.8e-40 169.5 140 70.0
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 2.3e-40 169.1 140 70.0
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.3e-40 169.1 144 66.7
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 3.0e-40 168.7 140 67.9
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 5.2e-40 167.9 140 69.3
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 5.2e-40 167.9 140 68.6
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 5.2e-40 167.9 156 63.5
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 6.7e-40 167.5 140 67.9
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 6.7e-40 167.5 140 67.9
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 8.8e-40 167.2 145 65.5
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.1e-39 166.8 140 67.9
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 1.1e-39 166.8 139 62.6
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 1.1e-39 166.8 139 69.8
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.5e-39 166.4 138 65.2
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 1.5e-39 166.4 140 67.9
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 2.6e-39 165.6 139 63.3
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 2.6e-39 165.6 140 69.3
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 4.4e-39 164.9 139 69.1
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 4.4e-39 164.9 139 67.6
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 4.4e-39 164.9 139 64.7
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 5.7e-39 164.5 139 69.1
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 7.4e-39 164.1 139 66.9
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 9.7e-39 163.7 136 67.6
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 1.3e-38 163.3 139 69.8
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.3e-38 163.3 139 66.9
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 1.7e-38 162.9 139 62.6
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 1.7e-38 162.9 140 67.1
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 2.2e-38 162.5 140 68.6
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 2.8e-38 162.2 141 64.5
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 3.7e-38 161.8 140 66.4
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 3.7e-38 161.8 141 66.0
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 4.8e-38 161.4 143 63.6
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 6.3e-38 161.0 139 66.2
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 6.3e-38 161.0 139 63.3
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 6.3e-38 161.0 136 65.4
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 8.2e-38 160.6 139 63.3
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 8.2e-38 160.6 133 66.2
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 1.1e-37 160.2 141 62.4
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 1.1e-37 160.2 140 65.7
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 1.4e-37 159.8 141 64.5
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 1.4e-37 159.8 140 62.9
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 1.8e-37 159.5 139 63.3
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 1.8e-37 159.5 142 64.8
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 1.8e-37 159.5 139 63.3
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 3.1e-37 158.7 140 66.4
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 4.1e-37 158.3 143 62.9
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 4.1e-37 158.3 139 65.5
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 4.1e-37 158.3 140 62.9
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 9.1e-37 157.1 157 59.2
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 1.6e-36 156.4 142 64.1
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 2.0e-36 156.0 141 64.5
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 2.0e-36 156.0 144 65.3
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 2.0e-36 156.0 139 62.6
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 2.0e-36 156.0 139 62.6
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 2.0e-36 156.0 139 62.6
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 2.0e-36 156.0 139 62.6
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 2.0e-36 156.0 139 62.6
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 2.6e-36 155.6 140 63.6
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 2.6e-36 155.6 142 60.6
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 4.5e-36 154.8 141 61.7
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 4.5e-36 154.8 140 61.4
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 5.9e-36 154.5 133 63.9
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 7.7e-36 154.1 133 63.9
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 7.7e-36 154.1 140 63.6
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 7.7e-36 154.1 135 63.7
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 7.7e-36 154.1 135 63.7
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.0e-35 153.7 142 62.7
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 1.0e-35 153.7 140 64.3
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.3e-35 153.3 140 63.6
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 1.7e-35 152.9 141 63.8
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 2.2e-35 152.5 143 61.5
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 2.2e-35 152.5 141 60.3
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 2.2e-35 152.5 140 63.6
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 2.9e-35 152.1 140 62.1
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 2.9e-35 152.1 140 62.1
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.9e-35 152.1 140 62.9
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 2.9e-35 152.1 140 60.0
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 3.8e-35 151.8 140 63.6
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 3.8e-35 151.8 140 63.6
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 5.0e-35 151.4 143 62.9
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 5.0e-35 151.4 141 61.0
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 5.0e-35 151.4 141 61.0
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 6.5e-35 151.0 141 61.0
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 6.5e-35 151.0 141 61.0
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 6.5e-35 151.0 140 62.9
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 6.5e-35 151.0 140 62.9
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 8.5e-35 150.6 141 61.0
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 8.5e-35 150.6 140 61.4
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 1.1e-34 150.2 140 60.7
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.1e-34 150.2 144 61.1
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.1e-34 150.2 146 59.6
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 1.1e-34 150.2 138 65.9
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 1.5e-34 149.8 141 60.3
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 1.5e-34 149.8 140 60.7
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 1.9e-34 149.4 140 60.7
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 1.9e-34 149.4 140 60.7
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 1.9e-34 149.4 140 60.7
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 2.5e-34 149.1 141 60.3
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 2.5e-34 149.1 141 60.3
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 2.5e-34 149.1 139 59.0
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 7.2e-34 147.5 139 59.0
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 7.2e-34 147.5 143 60.1
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 9.4e-34 147.1 137 59.1
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 9.4e-34 147.1 137 59.1
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 1.6e-33 146.4 143 60.8
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.6e-33 146.4 135 63.7
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 2.1e-33 146.0 141 61.0
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 3.6e-33 145.2 139 56.8
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 3.6e-33 145.2 140 57.1
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 3.6e-33 145.2 139 63.3
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 6.1e-33 144.4 143 59.4
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 8.0e-33 144.1 132 61.4
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 1.0e-32 143.7 137 61.3
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 1.0e-32 143.7 117 65.8
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.0e-32 143.7 155 57.4
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 2.6e-31 139.0 132 59.8
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 4.4e-31 138.3 137 56.2
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.8e-30 135.6 139 52.5
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 1.1e-29 133.7 88 78.4
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 2.7e-28 129.0 142 53.5
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 1.7e-27 126.3 89 71.9
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 3.8e-27 125.2 136 52.2
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 1.9e-26 122.9 116 57.8
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 1.6e-25 119.8 124 53.2
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 1.0e-24 117.1 109 61.5
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.3e-24 115.9 112 60.7
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 2.0e-23 112.8 122 50.0
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 2.2e-22 109.4 119 52.1
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.8e-21 106.3 146 50.0
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 9.1e-21 104.0 145 46.2
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.6e-20 103.2 144 45.8
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.6e-20 103.2 143 51.0
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.7e-20 102.4 147 49.7
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 4.5e-20 101.7 140 50.7
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 5.9e-20 101.3 120 51.7
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 7.7e-20 100.9 91 65.9
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 1.7e-19 99.8 65 69.2
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 5.0e-19 98.2 52 86.5
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 3.0e-16 89.0 90 63.3
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 3.0e-16 89.0 82 61.0
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 2.0e-15 86.3 130 43.1
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 2.0e-15 86.3 71 56.3
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 2.9e-11 72.4 68 52.9
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 4.9e-06 55.1 78 50.0


User provided reference genes

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