Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 1.3e-70 269.6 140 100.0
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.0e-62 243.4 140 90.7
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.5e-61 239.6 140 88.6
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 1.5e-61 239.6 140 87.9
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 2.5e-61 238.8 140 87.1
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 7.3e-61 237.3 140 87.1
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 9.5e-61 236.9 140 87.1
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 4.7e-60 234.6 140 86.4
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 6.2e-60 234.2 140 86.4
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 2.3e-59 232.3 140 85.7
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 2.3e-59 232.3 140 85.7
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 5.2e-59 231.1 140 85.0
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 2.0e-58 229.2 140 85.7
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 4.4e-58 228.0 140 82.9
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 5.8e-58 227.6 140 82.9
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 1.7e-57 226.1 140 82.1
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 2.2e-57 225.7 140 85.0
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 2.2e-57 225.7 140 82.1
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 6.4e-57 224.2 141 83.7
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 1.4e-56 223.0 140 81.4
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 2.4e-56 222.2 140 82.1
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 7.1e-56 220.7 140 79.3
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 9.2e-56 220.3 141 83.7
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 1.2e-55 219.9 138 82.6
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 1.2e-55 219.9 139 81.3
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.2e-55 219.9 140 81.4
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 2.1e-55 219.2 140 81.4
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 2.1e-55 219.2 140 81.4
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 2.1e-55 219.2 140 80.7
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 3.5e-55 218.4 140 79.3
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 3.5e-55 218.4 140 79.3
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 4.6e-55 218.0 140 81.4
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 4.6e-55 218.0 138 81.9
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 7.8e-55 217.2 140 80.7
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 1.0e-54 216.9 141 80.9
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.0e-54 216.9 140 80.0
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 1.0e-54 216.9 140 81.4
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 1.7e-54 216.1 140 81.4
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 1.7e-54 216.1 140 79.3
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 1.7e-54 216.1 140 80.0
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 2.3e-54 215.7 140 77.9
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 3.0e-54 215.3 141 81.6
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 3.0e-54 215.3 141 81.6
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 5.1e-54 214.5 141 79.4
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 5.1e-54 214.5 141 80.1
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 6.6e-54 214.2 140 80.7
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 6.6e-54 214.2 140 80.0
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 8.6e-54 213.8 140 80.0
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 1.1e-53 213.4 141 80.9
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 1.1e-53 213.4 140 78.6
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 3.3e-53 211.8 140 78.6
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 4.3e-53 211.5 141 80.9
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 7.3e-53 210.7 140 80.7
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 7.3e-53 210.7 141 78.0
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 7.3e-53 210.7 134 82.8
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 7.3e-53 210.7 141 78.0
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 1.2e-52 209.9 141 80.1
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 1.2e-52 209.9 141 80.1
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 2.1e-52 209.1 141 78.0
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 2.1e-52 209.1 140 79.3
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 2.8e-52 208.8 136 78.7
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 3.6e-52 208.4 142 79.6
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 3.6e-52 208.4 142 79.6
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 3.6e-52 208.4 141 78.7
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 4.7e-52 208.0 142 79.6
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 4.7e-52 208.0 141 79.4
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 6.2e-52 207.6 142 76.8
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 6.2e-52 207.6 141 78.0
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 8.1e-52 207.2 141 75.9
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 8.1e-52 207.2 141 78.7
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 8.1e-52 207.2 141 78.7
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 8.1e-52 207.2 141 78.7
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 1.8e-51 206.1 141 78.0
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.8e-51 206.1 135 80.7
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 1.8e-51 206.1 140 73.6
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 2.3e-51 205.7 142 79.6
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 2.3e-51 205.7 142 79.6
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 3.1e-51 205.3 142 80.3
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 5.2e-51 204.5 137 76.6
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 5.2e-51 204.5 140 77.9
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 6.8e-51 204.1 142 77.5
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 6.8e-51 204.1 141 77.3
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 6.8e-51 204.1 142 78.9
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 6.8e-51 204.1 140 78.6
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 8.9e-51 203.8 140 75.7
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 8.9e-51 203.8 141 77.3
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 8.9e-51 203.8 140 78.6
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 1.2e-50 203.4 142 76.1
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 1.5e-50 203.0 142 77.5
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 1.5e-50 203.0 142 77.5
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 2.0e-50 202.6 141 80.1
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 2.6e-50 202.2 141 77.3
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 2.6e-50 202.2 141 77.3
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 2.6e-50 202.2 141 77.3
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 2.6e-50 202.2 141 77.3
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 2.6e-50 202.2 141 77.3
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 2.6e-50 202.2 142 79.6
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 3.4e-50 201.8 142 77.5
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 3.4e-50 201.8 142 76.8
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 4.4e-50 201.4 140 75.0
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 4.4e-50 201.4 143 72.0
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 5.8e-50 201.1 141 77.3
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 5.8e-50 201.1 141 78.7
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 7.6e-50 200.7 134 77.6
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 9.9e-50 200.3 141 75.2
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 9.9e-50 200.3 141 77.3
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 3.8e-49 198.4 156 71.8
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 1.4e-48 196.4 139 74.8
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 1.4e-48 196.4 142 76.1
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 1.9e-48 196.1 140 74.3
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 3.2e-48 195.3 140 72.1
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 3.2e-48 195.3 140 72.1
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 5.4e-48 194.5 136 76.5
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 9.2e-48 193.7 142 73.2
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 9.2e-48 193.7 133 76.7
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 9.2e-48 193.7 140 72.9
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 1.2e-47 193.4 140 76.4
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 2.1e-47 192.6 141 73.8
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 2.1e-47 192.6 141 74.5
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 1.3e-46 189.9 141 75.2
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.3e-46 189.9 139 75.5
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 3.9e-46 188.3 145 73.8
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 5.1e-46 188.0 141 75.2
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 5.1e-46 188.0 143 72.0
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 5.1e-46 188.0 143 72.0
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 6.6e-46 187.6 109 84.4
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 5.6e-45 184.5 142 72.5
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.6e-44 183.0 144 69.4
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 3.6e-44 181.8 140 70.0
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 3.1e-43 178.7 136 69.1
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 5.2e-43 177.9 136 69.9
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 6.9e-43 177.6 138 68.1
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 3.4e-42 175.3 140 65.7
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 3.4e-42 175.3 140 67.9
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 3.4e-42 175.3 141 66.7
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 9.9e-42 173.7 140 65.7
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 1.1e-40 170.2 138 68.1
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 2.1e-39 166.0 161 63.4
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 3.0e-38 162.2 140 67.1
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 3.9e-38 161.8 155 65.2
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 2.5e-37 159.1 139 61.2
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 2.8e-36 155.6 147 59.9
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 8.1e-36 154.1 140 61.4
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 1.2e-34 150.2 91 82.4
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 2.0e-34 149.4 90 85.6
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 5.8e-34 147.9 88 83.0
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 5.8e-34 147.9 137 58.4
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 5.4e-32 141.4 114 69.3
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 5.4e-32 141.4 138 55.8
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 7.1e-32 141.0 140 57.1
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 5.1e-30 134.8 146 54.8
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 5.6e-29 131.3 136 58.1
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.8e-28 129.0 139 51.8
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 6.2e-28 127.9 90 77.8
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 1.4e-27 126.7 147 51.7
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.0e-26 122.9 140 52.1
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 3.4e-26 122.1 137 56.2
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 1.3e-25 120.2 90 71.1
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 1.8e-22 109.8 81 79.0
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 1.6e-20 103.2 138 42.0
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 3.7e-20 102.1 53 86.8
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 1.1e-19 100.5 67 68.7
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.1e-19 100.5 86 68.6
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 1.2e-18 97.1 141 46.8
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 2.5e-16 89.4 133 45.9
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 1.7e-09 66.6 136 43.4


User provided reference genes

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