Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 0.0e+00 1155.2 593 100.0
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 1.3e-260 902.9 616 79.9
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 5.9e-229 797.7 606 71.5
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 3.8e-228 795.0 605 71.6
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 3.2e-227 792.0 600 72.2
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 3.2e-227 792.0 612 71.2
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 2.1e-226 789.3 611 70.0
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 6.1e-226 787.7 600 71.3
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 1.4e-225 786.6 600 71.8
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.7e-223 779.6 610 68.4
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 1.7e-223 779.6 612 70.8
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 2.2e-223 779.2 605 69.9
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 2.2e-223 779.2 610 68.5
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 5.9e-221 771.2 605 70.6
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 2.9e-220 768.8 609 69.3
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 3.8e-220 768.5 606 69.1
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 7.3e-219 764.2 675 64.3
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 2.8e-218 762.3 603 68.8
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 4.7e-218 761.5 610 67.5
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 2.3e-217 759.2 608 68.8
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 4.0e-217 758.4 611 68.4
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 1.2e-216 756.9 611 68.1
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 1.5e-216 756.5 609 68.0
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 7.5e-216 754.2 605 66.9
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 1.3e-215 753.4 611 67.9
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 8.3e-215 750.7 608 67.4
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 1.8e-214 749.6 605 66.9
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 2.0e-213 746.1 605 66.3
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 2.7e-213 745.7 620 66.8
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 2.7e-213 745.7 601 67.6
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 4.6e-213 745.0 603 68.2
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 6.6e-212 741.1 607 66.6
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 1.9e-211 739.6 608 66.8
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 3.3e-211 738.8 608 66.9
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 5.6e-211 738.0 608 66.8
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 2.1e-210 736.1 599 66.9
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 3.6e-210 735.3 605 66.8
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 1.1e-209 733.8 597 66.3
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 1.8e-209 733.0 609 66.2
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 5.2e-209 731.5 609 66.2
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 1.5e-208 729.9 605 66.3
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 2.6e-208 729.2 609 65.8
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 5.8e-208 728.0 667 63.0
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 7.5e-208 727.6 611 66.3
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 1.3e-207 726.9 618 64.7
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 2.2e-207 726.1 597 68.0
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 6.4e-207 724.5 612 65.8
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 2.4e-206 722.6 627 64.9
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 1.6e-205 719.9 592 67.6
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 7.8e-205 717.6 606 64.7
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 3.0e-204 715.7 592 66.0
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 1.5e-203 713.4 616 64.6
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 7.3e-203 711.1 605 65.6
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 6.2e-202 708.0 588 66.8
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 4.4e-200 701.8 614 64.3
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 5.8e-200 701.4 588 66.0
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 9.9e-200 700.7 614 64.2
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 8.3e-199 697.6 614 63.0
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 1.4e-198 696.8 612 63.7
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 1.9e-198 696.4 601 64.4
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 3.2e-198 695.7 612 63.7
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 1.6e-197 693.3 610 64.1
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 1.6e-197 693.3 610 63.8
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 2.1e-197 693.0 608 64.0
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 2.1e-197 693.0 617 62.6
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 2.7e-197 692.6 612 63.9
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 3.5e-197 692.2 612 63.6
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 4.6e-197 691.8 588 66.0
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 6.0e-197 691.4 610 63.8
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 1.0e-196 690.6 610 63.8
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 1.3e-196 690.3 605 63.6
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 2.3e-196 689.5 652 61.3
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 3.6e-194 682.2 600 64.2
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 1.8e-193 679.9 527 69.3
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 2.0e-192 676.4 524 71.4
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 2.0e-192 676.4 599 62.3
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 9.9e-192 674.1 611 62.2
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 1.1e-190 670.6 602 62.6
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 4.6e-189 665.2 609 61.1
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 1.5e-187 660.2 577 63.8
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 1.9e-187 659.8 608 62.2
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 2.1e-186 656.4 599 63.3
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 2.4e-185 652.9 615 61.3
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.2e-184 650.6 616 60.1
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 4.9e-183 645.2 606 60.1
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 8.4e-183 644.4 590 62.4
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 2.5e-179 632.9 604 59.6
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 4.2e-158 562.4 472 66.9
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 1.2e-144 517.7 610 50.8
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 2.5e-142 510.0 728 45.5
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 2.3e-140 503.4 605 48.4
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 7.4e-139 498.4 555 51.9
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 2.0e-136 490.3 476 58.8
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 5.9e-128 462.2 537 47.5
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 4.5e-120 436.0 273 79.9
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 5.7e-115 419.1 598 45.8
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 8.9e-92 342.0 311 61.1
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 5.4e-81 306.2 366 53.6
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 1.6e-72 278.1 271 57.2
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 3.5e-56 223.8 166 69.9
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 1.7e-50 204.9 258 50.8
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 1.4e-41 175.3 120 70.8
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 3.2e-41 174.1 170 60.0
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 5.1e-39 166.8 120 68.3
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 5.1e-39 166.8 131 64.1
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 7.7e-35 152.9 195 43.1
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 2.5e-33 147.9 103 74.8
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 8.8e-31 139.4 315 37.1
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 5.5e-25 120.2 96 61.5
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 3.6e-24 117.5 178 42.7
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 6.1e-24 116.7 146 49.3
SMO228G0126 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.2e-19 102.4 187 39.0
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 1.6e-16 92.0 111 49.5
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 2.7e-16 91.3 117 47.9
SMO111G0176 Selaginella moellendorffii HOM05D013632 ORTHO05D008295 4.7e-16 90.5 95 49.5
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 8.0e-16 89.7 141 44.7
Cc02_g13940 Coffea canephora HOM05D006362 ORTHO05D008295 8.2e-13 79.7 55 78.2
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 4.1e-12 77.4 105 43.8
SMO122G0015 Selaginella moellendorffii HOM05D006362 ORTHO05D374567 1.0e-10 72.8 96 43.8
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 2.9e-10 71.2 45 73.3
SMO118G0508 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.6e-08 65.5 210 29.5
SMO014G0021 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 3.6e-08 64.3 175 33.1
SMO009G0006 Selaginella moellendorffii HOM05D013632 ORTHO05D379378 4.7e-08 63.9 141 34.8
Lsat_1_v5_gn_3_32440 Lactuca sativa HOM05D006362 ORTHO05D228842 3.0e-07 61.2 51 66.7
SMO144G0005 Selaginella moellendorffii HOM05D013632 ORTHO05D378182 2.0e-06 58.5 75 42.7


User provided reference genes

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