Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0105400 Salix brachista HOM05D003356 ORTHO05D030555 3.8e-70 268.1 139 100.0
Sabra11G0106400 Salix brachista HOM05D046224 ORTHO05D030555 1.4e-27 126.7 63 100.0
Sabra03G0150800 Salix brachista HOM05D046224 ORTHO05D030555 2.6e-26 122.5 62 96.8
Sabra11G0105100 Salix brachista HOM05D003356 ORTHO05D004362 2.2e-25 119.4 63 93.7
Potri.011G121100 Populus trichocarpa HOM05D003356 ORTHO05D004362 6.4e-25 117.9 65 87.7
QL08p020494 Quercus lobata HOM05D003356 ORTHO05D004362 1.0e-22 110.5 68 76.5
Thecc.07G080500 Theobroma cacao HOM05D003356 ORTHO05D004362 8.6e-22 107.5 65 78.5
CANSAT56G0567 Cannabis sativa HOM05D003356 ORTHO05D004362 1.1e-21 107.1 65 75.4
FvH4_3g20420 Fragaria vesca HOM05D003356 ORTHO05D004362 2.5e-21 105.9 65 73.8
FAN11G2849 Fragaria x ananassa HOM05D003356 ORTHO05D004362 2.5e-21 105.9 65 73.8
COL.COLO4_09421 Corchorus olitorius HOM05D003356 ORTHO05D004362 3.3e-21 105.5 64 76.6
FAN25G0303 Fragaria x ananassa HOM05D003356 ORTHO05D004362 3.3e-21 105.5 65 72.3
Manes.15G086100 Manihot esculenta HOM05D003356 ORTHO05D004362 3.3e-21 105.5 65 80.0
RcHm_v2.0_Chr5g0034311 Rosa chinensis HOM05D003356 ORTHO05D004362 3.3e-21 105.5 65 72.3
FAN21G0641 Fragaria x ananassa HOM05D003356 ORTHO05D004362 4.3e-21 105.1 65 70.8
Cpa.g.sc80.47 Carica papaya HOM05D003356 ORTHO05D004362 7.3e-21 104.4 65 75.4
MD11G1246200 Malus domestica HOM05D003356 ORTHO05D004362 7.3e-21 104.4 65 75.4
FAN16G2459 Fragaria x ananassa HOM05D003356 ORTHO05D004362 1.6e-20 103.2 65 70.8
Nn1g06580 Nelumbo nucifera HOM05D003356 ORTHO05D004362 1.6e-20 103.2 65 73.8
CiPaw.11G172300 Carya illinoinensis HOM05D003356 ORTHO05D004362 2.1e-20 102.8 72 69.4
Sed0005873 Sechium edule HOM05D003356 ORTHO05D004362 2.1e-20 102.8 65 73.8
Cfa020557 Carpinus fangiana HOM05D003356 ORTHO05D004362 2.8e-20 102.4 65 72.3
TPR.G31511 Trifolium pratense HOM05D003356 ORTHO05D004362 2.8e-20 102.4 65 73.8
arahy.Tifrunner.gnm1.ann1.1CAS5W Arachis hypogaea HOM05D003356 ORTHO05D004362 3.6e-20 102.1 65 72.3
arahy.Tifrunner.gnm1.ann1.4T1P38 Arachis hypogaea HOM05D003356 ORTHO05D004362 3.6e-20 102.1 65 72.3
Haze_09456 Corylus avellana HOM05D003356 ORTHO05D004362 3.6e-20 102.1 69 71.0
Hma1.2p1_0148F.1_g066130 Hydrangea macrophylla HOM05D003356 ORTHO05D004362 3.6e-20 102.1 65 72.3
MD03G1225500 Malus domestica HOM05D003356 ORTHO05D004362 3.6e-20 102.1 65 73.8
Nitab4.5_0001551g0030 Nicotiana tabacum HOM05D003356 ORTHO05D004362 3.6e-20 102.1 64 75.0
Nitab4.5_0003688g0040 Nicotiana tabacum HOM05D003356 ORTHO05D004362 3.6e-20 102.1 64 75.0
ClCG11G018140 Citrullus lanatus HOM05D003356 ORTHO05D004362 4.7e-20 101.7 69 71.0
Gohir.D11G296752 Gossypium hirsutum HOM05D003356 ORTHO05D004362 4.7e-20 101.7 65 70.8
Gorai.007G321200 Gossypium raimondii HOM05D003356 ORTHO05D004362 4.7e-20 101.7 65 70.8
Prupe.4G183900 Prunus persica HOM05D003356 ORTHO05D004362 4.7e-20 101.7 65 72.3
Solyc07g063230.3 Solanum lycopersicum HOM05D003356 ORTHO05D004362 4.7e-20 101.7 64 73.4
Sopen07g031420 Solanum pennellii HOM05D003356 ORTHO05D004362 4.7e-20 101.7 64 73.4
TAR626G0399 Trochodendron aralioides HOM05D003356 ORTHO05D004362 4.7e-20 101.7 64 76.6
Aa31LG8G2610 Aethionema arabicum HOM05D003356 ORTHO05D004362 6.2e-20 101.3 63 77.8
Aqoxy1G02485 Aquilegia oxysepala HOM05D003356 ORTHO05D004362 6.2e-20 101.3 65 75.4
CAN.G162.68 Capsicum annuum HOM05D003356 ORTHO05D004362 6.2e-20 101.3 64 71.9
Glyma.06G246600 Glycine max HOM05D003356 ORTHO05D004362 6.2e-20 101.3 65 70.8
Actinidia01887 Actinidia chinensis HOM05D003356 ORTHO05D004362 8.1e-20 100.9 64 71.9
Aqoxy4G00927 Aquilegia oxysepala HOM05D003356 ORTHO05D004362 8.1e-20 100.9 69 72.5
Glyma.12G150800 Glycine max HOM05D003356 ORTHO05D004362 8.1e-20 100.9 64 70.3
Manes.03G112000 Manihot esculenta HOM05D003356 ORTHO05D004362 8.1e-20 100.9 65 75.4
Gohir.A11G283100 Gossypium hirsutum HOM05D003356 ORTHO05D004362 1.1e-19 100.5 65 70.8
EL10Ac4g08143 Beta vulgaris HOM05D003356 ORTHO05D004362 1.4e-19 100.1 67 71.6
Cc05_g12210 Coffea canephora HOM05D003356 ORTHO05D004362 1.4e-19 100.1 64 73.4
Dinv04314 Davidia involucrata HOM05D003356 ORTHO05D004362 1.4e-19 100.1 68 70.6
Actinidia05623 Actinidia chinensis HOM05D003356 ORTHO05D004362 1.8e-19 99.8 64 71.9
MBI17_g30525_MAGBIO Magnolia biondii HOM05D003356 ORTHO05D004362 2.4e-19 99.4 66 69.7
PSO541G1226 Papaver somniferum HOM05D003356 ORTHO05D004362 2.4e-19 99.4 64 73.4
PSO675G9024 Papaver somniferum HOM05D003356 ORTHO05D004362 2.4e-19 99.4 64 73.4
PGSC0003DMG400012423 Solanum tuberosum HOM05D003356 ORTHO05D004362 2.4e-19 99.4 64 71.9
Dinv07551 Davidia involucrata HOM05D003356 ORTHO05D004362 3.1e-19 99.0 64 71.9
Medtr8g059125 Medicago truncatula HOM05D003356 ORTHO05D004362 3.1e-19 99.0 65 70.8
Lj3g0021569 Lotus japonicus HOM05D003356 ORTHO05D004362 4.0e-19 98.6 65 69.2
Peaxi162Scf00069g01337 Petunia axillaris HOM05D003356 ORTHO05D004362 4.0e-19 98.6 68 70.6
Psat4g135280 Pisum sativum HOM05D003356 ORTHO05D004362 4.0e-19 98.6 65 69.2
PGR083G2041 Punica granatum HOM05D003356 ORTHO05D004362 4.0e-19 98.6 65 70.8
arahy.Tifrunner.gnm1.ann1.YA7R1N Arachis hypogaea HOM05D003356 ORTHO05D004362 5.2e-19 98.2 65 67.7
arahy.Tifrunner.gnm1.ann1.YHI9TY Arachis hypogaea HOM05D003356 ORTHO05D004362 5.2e-19 98.2 65 67.7
Dinv08305 Davidia involucrata HOM05D003356 ORTHO05D004362 5.2e-19 98.2 64 70.3
Duzib213G0462 Durio zibethinus HOM05D003356 ORTHO05D004362 5.2e-19 98.2 65 67.7
Gohir.A01G065000 Gossypium hirsutum HOM05D003356 ORTHO05D004362 5.2e-19 98.2 65 69.2
Gohir.D01G052400 Gossypium hirsutum HOM05D003356 ORTHO05D004362 5.2e-19 98.2 65 69.2
Gorai.002G072200 Gossypium raimondii HOM05D003356 ORTHO05D004362 5.2e-19 98.2 65 69.2
VMungo1127G2063 Vigna mungo HOM05D003356 ORTHO05D004362 5.2e-19 98.2 65 66.2
Lj3g0006216 Lotus japonicus HOM05D003356 ORTHO05D004362 6.8e-19 97.8 64 68.8
TAR624G0482 Trochodendron aralioides HOM05D003356 ORTHO05D004362 6.8e-19 97.8 64 71.9
GSVIVG01014366001 Vitis vinifera HOM05D003356 ORTHO05D004362 6.8e-19 97.8 65 70.8
Ca_20647_v3 Cicer arietinum L. HOM05D003356 ORTHO05D004362 8.9e-19 97.4 65 69.2
Thhalv10020171m.g Eutrema salsugineum HOM05D003356 ORTHO05D004362 8.9e-19 97.4 66 72.7
Lalb_Chr19g0134291 Lupinus albus HOM05D003356 ORTHO05D004362 1.2e-18 97.1 67 65.7
Atru.chr2.2711 Acer truncatum HOM05D003356 ORTHO05D004362 1.5e-18 96.7 65 70.8
CsaV3_4G033780 Cucumis sativus L. HOM05D003356 ORTHO05D004362 1.5e-18 96.7 72 66.7
Glyma.12G223200 Glycine max HOM05D003356 ORTHO05D004362 1.5e-18 96.7 64 67.2
Phvul.011G150000 Phaseolus vulgaris HOM05D003356 ORTHO05D004362 1.5e-18 96.7 65 66.2
ECA236G2009 Erigeron canadensis HOM05D003356 ORTHO05D004362 2.0e-18 96.3 64 68.8
Lj1A846T66 Lonicera japonica HOM05D003356 ORTHO05D004362 2.0e-18 96.3 64 70.3
Lalb_Chr01g0006491 Lupinus albus HOM05D003356 ORTHO05D004362 2.0e-18 96.3 69 65.2
CSS0019237 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 2.6e-18 95.9 64 67.2
Hund22933 Selenicereus undatus HOM05D003356 ORTHO05D004362 2.6e-18 95.9 62 74.2
BcaB06g29569 Brassica carinata HOM05D003356 ORTHO05D004362 3.4e-18 95.5 66 71.2
BcaC05g28976 Brassica carinata HOM05D003356 ORTHO05D004362 3.4e-18 95.5 66 71.2
A03p39290 Brassica napus HOM05D003356 ORTHO05D004362 3.4e-18 95.5 66 71.2
A05p34020 Brassica napus HOM05D003356 ORTHO05D004362 3.4e-18 95.5 66 71.2
C05p51790 Brassica napus HOM05D003356 ORTHO05D004362 3.4e-18 95.5 66 71.2
BolC5t33865H Brassica oleracea HOM05D003356 ORTHO05D004362 3.4e-18 95.5 66 71.2
BraA03t13080Z Brassica rapa HOM05D003356 ORTHO05D004362 3.4e-18 95.5 66 71.2
BraA05t22224Z Brassica rapa HOM05D003356 ORTHO05D004362 3.4e-18 95.5 66 71.2
HanXRQChr15g0494641 Helianthus annuus HOM05D003356 ORTHO05D004362 3.4e-18 95.5 64 71.9
Ah.04g165130 Amaranthus hybridus HOM05D003356 ORTHO05D004362 4.4e-18 95.1 68 67.6
Sp3g13630 Schrenkiella parvula HOM05D003356 ORTHO05D004362 4.4e-18 95.1 66 69.7
Sc03g0009930 Simmondsia chinensis HOM05D003356 ORTHO05D004362 4.4e-18 95.1 64 70.3
Eucgr.F01103 Eucalyptus grandis HOM05D003356 ORTHO05D004362 5.8e-18 94.7 72 63.9
Glyma.13G278300 Glycine max HOM05D003356 ORTHO05D004362 5.8e-18 94.7 64 65.6
BcaC01g03876 Brassica carinata HOM05D003356 ORTHO05D004362 7.6e-18 94.4 66 69.7
C03p47660 Brassica napus HOM05D003356 ORTHO05D004362 7.6e-18 94.4 66 69.7
BolC3t17043H Brassica oleracea HOM05D003356 ORTHO05D004362 7.6e-18 94.4 66 69.7
Ciclev10007637m.g Citrus clementina HOM05D003356 ORTHO05D004362 7.6e-18 94.4 72 65.3
DCAR_004079 Daucus carota HOM05D003356 ORTHO05D004362 7.6e-18 94.4 67 68.7
THA.LOC104810480 Tarenaya hassleriana HOM05D003356 ORTHO05D004362 7.6e-18 94.4 65 70.8
Actinidia35254 Actinidia chinensis HOM05D003356 ORTHO05D004362 9.9e-18 94.0 64 68.8
Ah.06g183980 Amaranthus hybridus HOM05D003356 ORTHO05D004362 9.9e-18 94.0 68 66.2
AL3G27880 Arabidopsis lyrata HOM05D003356 ORTHO05D004362 9.9e-18 94.0 66 69.7
AT3G15380 Arabidopsis thaliana HOM05D003356 ORTHO05D004362 9.9e-18 94.0 66 69.7
CSS0023849 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 9.9e-18 94.0 64 68.8
Carub.0003s1510 Capsella rubella HOM05D003356 ORTHO05D004362 9.9e-18 94.0 66 69.7
Phvul.005G082401 Phaseolus vulgaris HOM05D003356 ORTHO05D004362 9.9e-18 94.0 64 65.6
SGA_v2.0_scaffold73G24287 Striga asiatica HOM05D003356 ORTHO05D004362 9.9e-18 94.0 64 65.6
MSTRG.6840 Avicennia marina HOM05D003356 ORTHO05D004362 1.3e-17 93.6 64 67.2
Rhsim04G0020100 Rhododendron simsii HOM05D003356 ORTHO05D004362 1.3e-17 93.6 64 68.8
DCAR_019547 Daucus carota HOM05D003356 ORTHO05D004362 1.7e-17 93.2 66 65.2
Hund02220 Selenicereus undatus HOM05D003356 ORTHO05D004362 1.7e-17 93.2 63 69.8
MSTRG.15221 Avicennia marina HOM05D003356 ORTHO05D004362 2.2e-17 92.8 64 67.2
CARHR090420 Cardamine hirsuta HOM05D003356 ORTHO05D004362 2.2e-17 92.8 66 68.2
HanXRQChr11g0328451 Helianthus annuus HOM05D003356 ORTHO05D004362 2.2e-17 92.8 64 67.2
Hma1.2p1_0881F.1_g232075 Hydrangea macrophylla HOM05D003356 ORTHO05D004362 2.9e-17 92.4 64 64.1
THA.LOC104818067 Tarenaya hassleriana HOM05D003356 ORTHO05D004362 3.8e-17 92.0 72 61.1
SGA_v2.0_scaffold34G13734 Striga asiatica HOM05D003356 ORTHO05D004362 4.9e-17 91.7 64 64.1
vmacro09540 Vaccinium macrocarpon HOM05D003356 ORTHO05D004362 6.4e-17 91.3 64 67.2
vmacro11852 Vaccinium macrocarpon HOM05D003356 ORTHO05D004362 6.4e-17 91.3 64 65.6
Migut.M00849 Erythranthe guttata HOM05D003356 ORTHO05D004362 8.4e-17 90.9 59 71.2
Lsat_1_v5_gn_7_105200 Lactuca sativa HOM05D003356 ORTHO05D004362 1.9e-16 89.7 68 63.2
Lsat_1_v5_gn_7_18881 Lactuca sativa HOM05D003356 ORTHO05D004362 1.9e-16 89.7 63 68.3
CSS0014763 Camellia sinensis var. sinensis HOM05D003356 ORTHO05D004362 2.4e-16 89.4 64 67.2
Ca_01833_v3 Cicer arietinum L. HOM05D003356 ORTHO05D004362 2.4e-16 89.4 64 60.9
Oeu005419.1 Olea europaea HOM05D003356 ORTHO05D004362 2.4e-16 89.4 68 63.2
Rhsim06G0197100 Rhododendron simsii HOM05D003356 ORTHO05D004362 2.4e-16 89.4 64 64.1
Actinidia18761 Actinidia chinensis HOM05D003356 ORTHO05D004362 3.2e-16 89.0 62 66.1
SalBow2G3561 Salvia bowleyana HOM05D003356 ORTHO05D004362 3.2e-16 89.0 62 67.7
HPP92_028116 Vanilla planifolia HOM05D003356 ORTHO05D004362 3.2e-16 89.0 64 64.1
Zm00001eb198690 Zea mays HOM05D003356 ORTHO05D004362 4.2e-16 88.6 65 60.0
TPR.G17977 Trifolium pratense HOM05D003356 ORTHO05D030555 5.4e-16 88.2 61 72.1
CDE06G0677 Ceratophyllum demersum HOM05D003356 ORTHO05D004362 9.3e-16 87.4 65 61.5
Medtr2g079490 Medicago truncatula HOM05D003356 ORTHO05D004362 9.3e-16 87.4 64 59.4
HPP92_014741 Vanilla planifolia HOM05D003356 ORTHO05D004362 9.3e-16 87.4 64 62.5
Psat5g244680 Pisum sativum HOM05D003356 ORTHO05D004362 2.7e-15 85.9 64 59.4
AUR62034265 Chenopodium quinoa HOM05D003356 ORTHO05D004362 4.6e-15 85.1 63 63.5
CDE04G3674 Ceratophyllum demersum HOM05D003356 ORTHO05D004362 6.0e-15 84.7 59 66.1
AUR62029372 Chenopodium quinoa HOM05D003356 ORTHO05D004362 6.0e-15 84.7 63 63.5
HanXRQChr15g0482461 Helianthus annuus HOM05D003356 ORTHO05D004362 6.0e-15 84.7 72 56.9
Os04g0681400 Oryza sativa ssp. japonica HOM05D003356 ORTHO05D004362 6.0e-15 84.7 72 56.9
SEGI_21847 Sequoiadendron giganteum HOM05D003356 ORTHO05D004362 6.0e-15 84.7 64 56.2
unitig_37.g12574 Utricularia gibba HOM05D003356 ORTHO05D004362 1.3e-14 83.6 71 57.7
Os04g0681600 Oryza sativa ssp. japonica HOM05D003356 ORTHO05D004362 1.7e-14 83.2 72 55.6
ECA236G3466 Erigeron canadensis HOM05D003356 ORTHO05D004362 3.9e-14 82.0 72 55.6
Potri.001G020400 Populus trichocarpa HOM05D000040 ORTHO05D002507 6.6e-14 81.3 49 77.6
ATR0680G284 Amborella trichopoda HOM05D003356 ORTHO05D004362 1.5e-13 80.1 72 55.6
Zm00001eb065890 Zea mays HOM05D003356 ORTHO05D004362 1.5e-13 80.1 72 54.2
Sabra01G0015100 Salix brachista HOM05D000040 ORTHO05D002507 2.5e-13 79.3 49 77.6
Lalb_Chr25g0286481 Lupinus albus HOM05D003356 ORTHO05D004362 5.4e-08 61.6 36 69.4
Mapoly0001s0233 Marchantia polymorpha HOM05D003356 ORTHO05D004362 2.1e-07 59.7 71 42.3


User provided reference genes

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