Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 6.8e-131 470.7 243 100.0
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 6.8e-131 470.7 243 100.0
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 5.1e-118 427.9 244 92.2
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 1.2e-90 337.0 247 73.7
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 9.6e-85 317.4 247 69.6
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 1.6e-84 316.6 247 69.6
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 3.7e-84 315.5 247 69.2
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 8.1e-84 314.3 247 68.8
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 3.1e-83 312.4 247 68.8
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 6.9e-83 311.2 247 68.0
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 1.5e-82 310.1 245 66.9
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 2.6e-82 309.3 243 67.5
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 4.5e-82 308.5 245 66.1
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 7.1e-80 301.2 245 65.7
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 5.1e-78 295.0 246 65.4
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 2.5e-77 292.7 242 63.6
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 4.8e-76 288.5 237 64.1
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 2.6e-74 282.7 246 62.6
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 1.9e-72 276.6 233 63.5
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 3.2e-72 275.8 252 63.9
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 7.1e-72 274.6 246 62.2
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 1.2e-71 273.9 245 63.3
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 1.2e-71 273.9 242 63.2
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 2.7e-71 272.7 249 62.2
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 2.7e-71 272.7 238 64.7
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 6.1e-71 271.6 238 64.3
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 3.0e-70 269.2 243 58.4
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 3.9e-70 268.9 238 62.6
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 8.7e-70 267.7 236 62.7
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 1.5e-69 266.9 246 61.4
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 1.5e-69 266.9 244 61.1
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 1.9e-69 266.5 246 61.4
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 1.9e-69 266.5 238 63.4
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 2.5e-69 266.2 229 62.0
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 5.7e-69 265.0 245 60.0
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 7.4e-69 264.6 243 61.7
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 1.6e-68 263.5 245 59.2
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 2.2e-68 263.1 235 63.0
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 2.2e-68 263.1 249 60.6
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 2.8e-68 262.7 248 59.7
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 4.8e-68 261.9 243 59.7
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 6.3e-68 261.5 241 61.0
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 6.3e-68 261.5 233 62.2
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 1.4e-67 260.4 251 61.0
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 1.8e-67 260.0 250 60.0
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 2.4e-67 259.6 243 60.5
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 3.1e-67 259.2 251 59.8
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 5.3e-67 258.5 241 58.9
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 9.0e-67 257.7 237 62.0
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 1.2e-66 257.3 243 60.9
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 1.5e-66 256.9 243 58.8
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 1.5e-66 256.9 255 56.5
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 3.4e-66 255.8 243 57.6
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 4.5e-66 255.4 243 57.6
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 4.5e-66 255.4 231 61.0
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 4.5e-66 255.4 249 57.8
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 7.7e-66 254.6 243 57.2
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 1.4e-64 250.4 243 58.0
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 1.4e-64 250.4 252 56.0
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 1.9e-64 250.0 251 54.2
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 1.9e-64 250.0 245 58.8
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 3.2e-64 249.2 252 54.4
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 3.2e-64 249.2 237 59.5
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 3.2e-64 249.2 238 59.2
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 7.2e-64 248.1 245 56.3
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 1.2e-63 247.3 247 56.3
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 1.2e-63 247.3 244 59.0
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 1.2e-63 247.3 246 56.5
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 1.6e-63 246.9 243 58.8
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 2.1e-63 246.5 253 53.4
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 2.1e-63 246.5 238 58.4
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 2.7e-63 246.1 243 57.6
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 6.1e-63 245.0 248 55.6
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 1.8e-62 243.4 256 53.1
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 3.9e-62 242.3 245 55.9
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 3.9e-62 242.3 245 57.6
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 8.8e-62 241.1 254 52.8
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 3.3e-61 239.2 247 55.5
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 3.3e-61 239.2 230 60.0
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 9.7e-61 237.7 247 55.9
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 9.7e-61 237.7 248 54.8
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 9.7e-61 237.7 248 54.8
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 1.3e-60 237.3 234 57.7
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 1.7e-60 236.9 255 53.7
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 2.8e-60 236.1 235 56.6
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 2.8e-60 236.1 235 56.6
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 3.7e-60 235.7 227 59.0
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 8.2e-60 234.6 246 53.3
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 3.1e-59 232.6 232 56.5
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 4.1e-59 232.3 227 56.8
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 5.3e-59 231.9 240 57.1
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 1.5e-58 230.3 245 55.1
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 1.5e-58 230.3 255 52.9
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 2.0e-58 229.9 237 56.1
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 2.6e-58 229.6 225 56.9
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 2.9e-57 226.1 245 50.6
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 3.0e-54 216.1 242 52.9
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 5.1e-54 215.3 250 53.2
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 7.4e-53 211.5 224 55.8
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 7.4e-53 211.5 245 50.6
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 2.2e-52 209.9 232 55.2
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 2.4e-51 206.5 194 59.3
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 3.1e-51 206.1 255 49.0
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 4.2e-48 195.7 249 48.6
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 4.2e-48 195.7 239 48.5
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 2.7e-47 193.0 248 47.6
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 2.7e-47 193.0 251 48.2
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 1.0e-46 191.0 248 47.2
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 1.0e-46 191.0 248 47.2
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 1.8e-46 190.3 236 48.3
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 5.2e-46 188.7 250 46.4
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 1.2e-42 177.6 131 66.4
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 1.6e-42 177.2 175 57.7
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 4.2e-40 169.1 187 55.6
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 1.0e-30 137.9 124 57.3
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 1.5e-29 134.0 131 55.7
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 1.2e-23 114.4 115 53.9
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 6.1e-23 112.1 219 36.1
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 1.4e-19 100.9 173 39.9
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 1.6e-18 97.4 130 49.2
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 3.5e-18 96.3 75 62.7
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 1.7e-17 94.0 79 63.3
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 2.9e-17 93.2 128 47.7
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 3.6e-15 86.3 137 42.3
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 5.2e-14 82.4 86 48.8
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 9.8e-13 78.2 62 58.1
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 1.4e-11 74.3 100 51.0
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 2.0e-10 70.5 121 38.0
Lsat_1_v5_gn_3_52480 Lactuca sativa HOM05D005854 ORTHO05D007175 1.6e-07 60.8 83 43.4


User provided reference genes

Program Settings