Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0089600 Salix brachista HOM05D003349 ORTHO05D003898 3.2e-37 157.9 81 100.0
Sabra11G0092800 Salix brachista HOM05D001236 ORTHO05D001090 2.8e-33 144.8 80 92.5
Sabra19G0041800 Salix brachista HOM05D003349 ORTHO05D003898 1.8e-32 142.1 75 97.3
Potri.019G033900 Populus trichocarpa HOM05D003349 ORTHO05D003898 7.0e-32 140.2 75 94.7
Sabra13G0052200 Salix brachista HOM05D003349 ORTHO05D003898 1.2e-31 139.4 76 93.4
Potri.013G058700 Populus trichocarpa HOM05D003349 ORTHO05D003898 1.6e-31 139.0 75 94.7
Manes.09G142100 Manihot esculenta HOM05D003349 ORTHO05D003898 3.8e-30 134.4 75 90.7
Manes.08G150100 Manihot esculenta HOM05D003349 ORTHO05D003898 6.6e-30 133.7 75 90.7
Duzib128G1865 Durio zibethinus HOM05D003349 ORTHO05D003898 8.6e-30 133.3 75 90.7
PGR042G2987 Punica granatum HOM05D003349 ORTHO05D003898 1.1e-29 132.9 75 90.7
Cpa.g.sc51.107 Carica papaya HOM05D003349 ORTHO05D003898 1.5e-29 132.5 74 91.9
Thecc.05G293700 Theobroma cacao HOM05D003349 ORTHO05D003898 1.9e-29 132.1 75 89.3
Ciclev10019371m.g Citrus clementina HOM05D003349 ORTHO05D003898 3.3e-29 131.3 76 89.5
Hma1.2p1_0376F.1_g139170 Hydrangea macrophylla HOM05D003349 ORTHO05D003898 4.3e-29 131.0 75 89.3
Duzib177G0419 Durio zibethinus HOM05D003349 ORTHO05D003898 7.3e-29 130.2 75 88.0
Gohir.A11G259100 Gossypium hirsutum HOM05D003349 ORTHO05D003898 7.3e-29 130.2 75 88.0
Gohir.D11G269200 Gossypium hirsutum HOM05D003349 ORTHO05D003898 7.3e-29 130.2 75 88.0
Gorai.007G289100 Gossypium raimondii HOM05D003349 ORTHO05D003898 7.3e-29 130.2 75 88.0
COL.COLO4_13609 Corchorus olitorius HOM05D003349 ORTHO05D003898 9.5e-29 129.8 75 88.0
Actinidia22087 Actinidia chinensis HOM05D003349 ORTHO05D003898 2.1e-28 128.6 75 88.0
Dinv37011 Davidia involucrata HOM05D003349 ORTHO05D003898 3.6e-28 127.9 75 88.0
Lj1A1137T83 Lonicera japonica HOM05D003349 ORTHO05D003898 6.1e-28 127.1 75 86.7
Rhsim03G0001200 Rhododendron simsii HOM05D003349 ORTHO05D003898 8.0e-28 126.7 75 86.7
THA.LOC104821510 Tarenaya hassleriana HOM05D003349 ORTHO05D003898 8.0e-28 126.7 75 85.3
CiPaw.09G001500 Carya illinoinensis HOM05D003349 ORTHO05D003898 1.0e-27 126.3 75 88.0
BcaB01g02049 Brassica carinata HOM05D003349 ORTHO05D003898 1.4e-27 125.9 75 84.0
BcaNung04049 Brassica carinata HOM05D003349 ORTHO05D003898 1.4e-27 125.9 75 84.0
BcaNung04050 Brassica carinata HOM05D003349 ORTHO05D003898 1.4e-27 125.9 75 84.0
A09p01870 Brassica napus HOM05D003349 ORTHO05D003898 1.4e-27 125.9 75 84.0
C09p01910 Brassica napus HOM05D003349 ORTHO05D003898 1.4e-27 125.9 75 84.0
BolC9t53126H Brassica oleracea HOM05D003349 ORTHO05D003898 1.4e-27 125.9 75 84.0
BraA09t35838Z Brassica rapa HOM05D003349 ORTHO05D003898 1.4e-27 125.9 75 84.0
PSO384G0567 Papaver somniferum HOM05D003349 ORTHO05D003898 1.4e-27 125.9 75 84.0
PSO339G2750 Papaver somniferum HOM05D003349 ORTHO05D003898 2.3e-27 125.2 75 84.0
Prupe.7G003500 Prunus persica HOM05D003349 ORTHO05D003898 2.3e-27 125.2 75 85.3
Hund19241 Selenicereus undatus HOM05D003349 ORTHO05D003898 2.3e-27 125.2 75 85.3
CDE07G0844 Ceratophyllum demersum HOM05D003349 ORTHO05D003898 3.0e-27 124.8 75 84.0
Thhalv10028548m.g Eutrema salsugineum HOM05D003349 ORTHO05D003898 3.0e-27 124.8 75 84.0
CDE06G0484 Ceratophyllum demersum HOM05D003349 ORTHO05D003898 4.0e-27 124.4 75 84.0
Medtr0495s0010 Medicago truncatula HOM05D003349 ORTHO05D003898 4.0e-27 124.4 75 82.7
Medtr6g032885 Medicago truncatula HOM05D003349 ORTHO05D003898 4.0e-27 124.4 75 82.7
Aa31LG2G1970 Aethionema arabicum HOM05D003349 ORTHO05D003898 5.2e-27 124.0 75 84.0
AL1G64640 Arabidopsis lyrata HOM05D003349 ORTHO05D003898 5.2e-27 124.0 75 84.0
AT1G54385 Arabidopsis thaliana HOM05D003349 ORTHO05D003898 5.2e-27 124.0 75 84.0
CARHR055490 Cardamine hirsuta HOM05D003349 ORTHO05D003898 5.2e-27 124.0 75 84.0
Sabra15G0069100 Salix brachista HOM05D003349 ORTHO05D003898 5.2e-27 124.0 74 86.5
Sabra15G0069300 Salix brachista HOM05D003349 ORTHO05D003898 5.2e-27 124.0 74 86.5
Sabra15G0072800 Salix brachista HOM05D003349 ORTHO05D003898 5.2e-27 124.0 74 86.5
Atru.chr2.1365 Acer truncatum HOM05D003349 ORTHO05D003898 6.8e-27 123.6 75 84.0
Carub.0002s0958 Capsella rubella HOM05D003349 ORTHO05D003898 6.8e-27 123.6 75 84.0
Lsat_1_v5_gn_1_59620 Lactuca sativa HOM05D003349 ORTHO05D003898 6.8e-27 123.6 75 85.3
Sp6g02300 Schrenkiella parvula HOM05D003349 ORTHO05D003898 6.8e-27 123.6 75 82.7
CiPaw.06G089600 Carya illinoinensis HOM05D003349 ORTHO05D003898 8.9e-27 123.2 75 85.3
Haze_19412 Corylus avellana HOM05D003349 ORTHO05D003898 8.9e-27 123.2 75 85.3
arahy.Tifrunner.gnm1.ann1.GFD0T8 Arachis hypogaea HOM05D003349 ORTHO05D003898 1.2e-26 122.9 74 83.8
arahy.Tifrunner.gnm1.ann1.N26BUN Arachis hypogaea HOM05D003349 ORTHO05D003898 1.2e-26 122.9 74 83.8
Cpa.g.sc51.102 Carica papaya HOM05D003349 ORTHO05D003898 1.2e-26 122.9 75 85.3
Lsat_1_v5_gn_2_57641 Lactuca sativa HOM05D003349 ORTHO05D003898 1.2e-26 122.9 75 82.7
vmacro12571 Vaccinium macrocarpon HOM05D003349 ORTHO05D003898 1.2e-26 122.9 75 84.0
TWI60G1263 Tripterygium wilfordii HOM05D003349 ORTHO05D003898 1.5e-26 122.5 75 81.3
TPR.G34626 Trifolium pratense HOM05D003349 ORTHO05D003898 2.0e-26 122.1 75 81.3
Ca_21768_v3 Cicer arietinum L. HOM05D003349 ORTHO05D003898 2.6e-26 121.7 75 81.3
Glyma.02G071700 Glycine max HOM05D003349 ORTHO05D003898 2.6e-26 121.7 75 81.3
Migut.J01894 Erythranthe guttata HOM05D003349 ORTHO05D003898 3.4e-26 121.3 75 82.7
Psat1g096120 Pisum sativum HOM05D003349 ORTHO05D003898 3.4e-26 121.3 75 81.3
Oeu012406.1 Olea europaea HOM05D003349 ORTHO05D003898 4.4e-26 120.9 75 81.3
TAR369G0075 Trochodendron aralioides HOM05D003349 ORTHO05D003898 4.4e-26 120.9 75 82.7
TAR636G3347 Trochodendron aralioides HOM05D003349 ORTHO05D003898 4.4e-26 120.9 75 82.7
Lalb_Chr02g0157061 Lupinus albus HOM05D003349 ORTHO05D003898 5.7e-26 120.6 75 82.7
SalBow6G1268 Salvia bowleyana HOM05D003349 ORTHO05D003898 5.7e-26 120.6 75 82.7
Glyma.16G152900 Glycine max HOM05D003349 ORTHO05D003898 9.8e-26 119.8 75 80.0
Lj2A357T88 Lonicera japonica HOM05D003349 ORTHO05D003898 9.8e-26 119.8 76 82.9
SGA_v2.0_scaffold118G32450 Striga asiatica HOM05D003349 ORTHO05D003898 9.8e-26 119.8 75 82.7
ECA238G0201 Erigeron canadensis HOM05D003349 ORTHO05D003898 1.3e-25 119.4 75 81.3
Lj2g0007320 Lotus japonicus HOM05D003349 ORTHO05D003898 1.3e-25 119.4 75 80.0
PGSC0003DMG400008643 Solanum tuberosum HOM05D003349 ORTHO05D003898 1.3e-25 119.4 75 81.3
Cc06_g22870 Coffea canephora HOM05D003349 ORTHO05D003898 1.7e-25 119.0 73 86.3
CsaV3_4G013310 Cucumis sativus L. HOM05D003349 ORTHO05D003898 1.7e-25 119.0 75 80.0
ECA285G0003 Erigeron canadensis HOM05D003349 ORTHO05D003898 1.7e-25 119.0 75 81.3
TWI34G0012 Tripterygium wilfordii HOM05D003349 ORTHO05D003898 1.7e-25 119.0 75 82.7
TAR633G2041 Trochodendron aralioides HOM05D003349 ORTHO05D003898 1.7e-25 119.0 75 81.3
CAN.G317.13 Capsicum annuum HOM05D003349 ORTHO05D003898 2.2e-25 118.6 75 80.0
HanXRQChr01g0024711 Helianthus annuus HOM05D003349 ORTHO05D003898 2.2e-25 118.6 75 81.3
MSTRG.19938 Avicennia marina HOM05D003349 ORTHO05D003898 2.9e-25 118.2 75 81.3
Nitab4.5_0000001g0070 Nicotiana tabacum HOM05D003349 ORTHO05D003898 2.9e-25 118.2 75 80.0
ClCG04G005280 Citrullus lanatus HOM05D003349 ORTHO05D003898 3.7e-25 117.9 75 78.7
MELO3C008798.2 Cucumis melo HOM05D003349 ORTHO05D003898 3.7e-25 117.9 75 78.7
QL07p020065 Quercus lobata HOM05D003349 ORTHO05D003898 3.7e-25 117.9 75 82.7
SGA_v2.0_scaffold24G10518 Striga asiatica HOM05D003349 ORTHO05D003898 3.7e-25 117.9 75 80.0
Ca_25618_v3 Cicer arietinum L. HOM05D003349 ORTHO05D003898 4.9e-25 117.5 75 80.0
Lalb_Chr06g0173961 Lupinus albus HOM05D003349 ORTHO05D003898 4.9e-25 117.5 75 77.3
SHI21767 Sapria himalayana HOM05D003349 ORTHO05D003898 4.9e-25 117.5 75 78.7
EL10Ac3g06814 Beta vulgaris HOM05D003349 ORTHO05D003898 6.4e-25 117.1 75 78.7
Sed0027207 Sechium edule HOM05D003349 ORTHO05D003898 8.3e-25 116.7 75 77.3
CSS0039180 Camellia sinensis var. sinensis HOM05D003349 ORTHO05D003898 1.4e-24 115.9 79 79.7
CANSAT78G1787 Cannabis sativa HOM05D003349 ORTHO05D003898 1.4e-24 115.9 75 81.3
Eucgr.K01495 Eucalyptus grandis HOM05D003349 ORTHO05D003898 1.4e-24 115.9 75 80.0
GSVIVG01033391001 Vitis vinifera HOM05D003349 ORTHO05D003898 1.4e-24 115.9 72 83.3
FvH4_1g28060 Fragaria vesca HOM05D003349 ORTHO05D003898 1.8e-24 115.5 75 77.3
FAN19G0867 Fragaria x ananassa HOM05D003349 ORTHO05D003898 1.8e-24 115.5 75 77.3
FAN23G0882 Fragaria x ananassa HOM05D003349 ORTHO05D003898 1.8e-24 115.5 75 77.3
FAN26G3194 Fragaria x ananassa HOM05D003349 ORTHO05D003898 1.8e-24 115.5 75 77.3
Sopen03g015010 Solanum pennellii HOM05D003349 ORTHO05D003898 1.8e-24 115.5 75 77.3
Peaxi162Scf00076g01031 Petunia axillaris HOM05D003349 ORTHO05D003898 2.4e-24 115.2 75 82.7
Sed0005648 Sechium edule HOM05D003349 ORTHO05D003898 2.4e-24 115.2 75 76.0
Lalb_Chr21g0317171 Lupinus albus HOM05D003349 ORTHO05D003898 4.1e-24 114.4 75 78.7
RcHm_v2.0_Chr3g0497191 Rosa chinensis HOM05D003349 ORTHO05D003898 4.1e-24 114.4 75 76.0
unitig_899.g15643 Utricularia gibba HOM05D003349 ORTHO05D003898 4.1e-24 114.4 76 76.3
Aqoxy1G00500 Aquilegia oxysepala HOM05D003349 ORTHO05D003898 5.4e-24 114.0 75 78.7
AUR62032062 Chenopodium quinoa HOM05D003349 ORTHO05D003898 5.4e-24 114.0 75 80.0
Nn2g15886 Nelumbo nucifera HOM05D003349 ORTHO05D003898 7.0e-24 113.6 75 80.0
Phvul.004G079400 Phaseolus vulgaris HOM05D003349 ORTHO05D003898 7.0e-24 113.6 76 77.6
Sc19g0006470 Simmondsia chinensis HOM05D003349 ORTHO05D003898 7.0e-24 113.6 75 80.0
CANSAT56G0778 Cannabis sativa HOM05D003349 ORTHO05D003898 9.2e-24 113.2 76 76.3
HanXRQChr09g0266371 Helianthus annuus HOM05D003349 ORTHO05D003898 9.2e-24 113.2 68 85.3
Oeu060005.1 Olea europaea HOM05D003349 ORTHO05D003898 1.6e-23 112.5 77 76.6
TAR623G1645 Trochodendron aralioides HOM05D003349 ORTHO05D003898 1.6e-23 112.5 75 77.3
DCAR_009680 Daucus carota HOM05D003349 ORTHO05D003898 2.7e-23 111.7 75 76.0
ATR0697G133 Amborella trichopoda HOM05D003349 ORTHO05D003898 3.5e-23 111.3 75 73.3
AUR62032685 Chenopodium quinoa HOM05D003349 ORTHO05D003898 3.5e-23 111.3 75 78.7
DCAR_019880 Daucus carota HOM05D003349 ORTHO05D003898 3.5e-23 111.3 75 74.7
Glyma.19G110600 Glycine max HOM05D003349 ORTHO05D003898 1.0e-22 109.8 75 77.3
FvH4_5g28880 Fragaria vesca HOM05D003349 ORTHO05D003898 2.3e-22 108.6 75 74.7
FAN13G1757 Fragaria x ananassa HOM05D003349 ORTHO05D003898 2.3e-22 108.6 75 74.7
FAN18G3983 Fragaria x ananassa HOM05D003349 ORTHO05D003898 2.3e-22 108.6 75 74.7
Os11g0580000 Oryza sativa ssp. japonica HOM05D003349 ORTHO05D003898 2.3e-22 108.6 76 75.0
Glyma.16G041800 Glycine max HOM05D003349 ORTHO05D003898 8.6e-22 106.7 75 74.7
MD12G1003000 Malus domestica HOM05D003349 ORTHO05D003898 8.6e-22 106.7 74 77.0
Nn7g35824 Nelumbo nucifera HOM05D003349 ORTHO05D003898 1.1e-21 106.3 75 76.0
Lj1g0027644 Lotus japonicus HOM05D003349 ORTHO05D003898 1.5e-21 105.9 75 73.3
Zm00001eb200470 Zea mays HOM05D003349 ORTHO05D003898 1.5e-21 105.9 82 68.3
Nn4g24247 Nelumbo nucifera HOM05D003349 ORTHO05D003898 1.9e-21 105.5 74 75.7
VMungo1383G1871 Vigna mungo HOM05D003349 ORTHO05D003898 4.3e-21 104.4 75 72.0
PGR142G2675 Punica granatum HOM05D003349 ORTHO05D003898 5.6e-21 104.0 75 70.7
HPP92_004178 Vanilla planifolia HOM05D003349 ORTHO05D003898 1.6e-20 102.4 75 72.0
Nn5g30180 Nelumbo nucifera HOM05D003349 ORTHO05D003898 2.8e-20 101.7 74 75.7
HanXRQChr16g0523881 Helianthus annuus HOM05D003349 ORTHO05D003898 4.7e-20 100.9 63 81.0
Nitab4.5_0002825g0010 Nicotiana tabacum HOM05D003349 ORTHO05D003898 8.0e-20 100.1 63 81.0
Phvul.001G110000 Phaseolus vulgaris HOM05D003349 ORTHO05D003898 1.8e-19 99.0 75 74.7
THA.LOC104820732 Tarenaya hassleriana HOM05D003349 ORTHO05D003898 1.5e-18 95.9 75 64.0
arahy.Tifrunner.gnm1.ann1.L5U228 Arachis hypogaea HOM05D003349 ORTHO05D003898 2.6e-18 95.1 74 66.2
BcaC05g30237 Brassica carinata HOM05D003349 ORTHO05D003898 1.3e-17 92.8 75 64.0
BcaC05g30298 Brassica carinata HOM05D003349 ORTHO05D003898 1.3e-17 92.8 75 64.0
arahy.Tifrunner.gnm1.ann1.CJ7Z8Q Arachis hypogaea HOM05D003349 ORTHO05D003898 1.7e-17 92.4 74 64.9
Carub.0003s0322 Capsella rubella HOM05D003349 ORTHO05D003898 1.7e-17 92.4 75 62.7
Thhalv10022309m.g Eutrema salsugineum HOM05D003349 ORTHO05D003898 1.1e-16 89.7 75 62.7
BraA05t23079Z Brassica rapa HOM05D003349 ORTHO05D003898 1.4e-16 89.4 75 62.7
BcaC05g29887 Brassica carinata HOM05D003349 ORTHO05D003898 1.9e-16 89.0 75 61.3
BolC5t34961H Brassica oleracea HOM05D003349 ORTHO05D003898 1.9e-16 89.0 75 61.3
AL3G13880 Arabidopsis lyrata HOM05D003349 ORTHO05D003898 2.4e-16 88.6 75 60.0
Sp3g02940 Schrenkiella parvula HOM05D003349 ORTHO05D003898 3.2e-16 88.2 75 61.3
A05p43390 Brassica napus HOM05D003349 ORTHO05D003898 4.1e-16 87.8 75 60.0
C05p63090 Brassica napus HOM05D003349 ORTHO05D003898 5.4e-16 87.4 75 60.0
AT3G03970 Arabidopsis thaliana HOM05D003349 ORTHO05D003898 7.0e-16 87.0 75 58.7
Pp3c5_7300 Physcomitrium patens HOM05D003349 ORTHO05D003898 2.0e-15 85.5 71 60.6
THA.LOC104802863 Tarenaya hassleriana HOM05D003349 ORTHO05D003898 2.0e-15 85.5 75 61.3
BolC1t05788H Brassica oleracea HOM05D003349 ORTHO05D003898 2.7e-15 85.1 76 60.5
Sabra18G0055600 Salix brachista HOM05D003349 ORTHO05D350155 2.7e-15 85.1 58 75.9
MD14G1002300 Malus domestica HOM05D003349 ORTHO05D003898 3.5e-15 84.7 49 87.8
Actinidia30557 Actinidia chinensis HOM05D003349 ORTHO05D003898 4.6e-15 84.3 49 87.8
BraA01t04546Z Brassica rapa HOM05D003349 ORTHO05D003898 7.8e-15 83.6 76 59.2
SEGI_12350 Sequoiadendron giganteum HOM05D003349 ORTHO05D003898 1.0e-14 83.2 75 56.0
A01p41230 Brassica napus HOM05D003349 ORTHO05D003898 1.3e-14 82.8 76 57.9
BNapus_Darmor_BZH_scaffold_78p00480 Brassica napus HOM05D003349 ORTHO05D003898 1.3e-14 82.8 76 57.9
CARHR078110 Cardamine hirsuta HOM05D003349 ORTHO05D003898 2.3e-14 82.0 75 57.3
HanXRQChr03g0090421 Helianthus annuus HOM05D003349 ORTHO05D003898 3.0e-14 81.6 76 56.6
Mapoly0001s0286 Marchantia polymorpha HOM05D003349 ORTHO05D003898 3.0e-14 81.6 73 56.2
Aa31LG5G14550 Aethionema arabicum HOM05D003349 ORTHO05D003898 8.6e-14 80.1 75 57.3
Solyc03g062700.4 Solanum lycopersicum HOM05D003349 ORTHO05D003898 1.1e-13 79.7 49 81.6
AagrBONN_evm.TU.Sc2ySwM_117.2517 Anthoceros agrestis HOM05D003349 ORTHO05D003898 2.5e-13 78.6 77 51.9
BraA09t41584Z Brassica rapa HOM05D003349 ORTHO05D003898 2.5e-13 78.6 76 57.9
Sabra18G0055700 Salix brachista HOM05D003349 ORTHO05D350099 4.3e-13 77.8 58 74.1
BolC1t05779H Brassica oleracea HOM05D003349 ORTHO05D003898 9.5e-13 76.6 67 61.2
Pp3c22_2440 Physcomitrium patens HOM05D003349 ORTHO05D003898 1.6e-12 75.9 73 49.3
Pp3c3_27710 Physcomitrium patens HOM05D003349 ORTHO05D003898 4.0e-11 71.2 73 49.3
Pp3c18_19210 Physcomitrium patens HOM05D003349 ORTHO05D003898 1.7e-09 65.9 73 43.8
Pp3c19_3520 Physcomitrium patens HOM05D003349 ORTHO05D003898 1.7e-09 65.9 73 45.2
Pp3c19_3524 Physcomitrium patens HOM05D003349 ORTHO05D003898 1.7e-09 65.9 73 45.2
SMO116G0096 Selaginella moellendorffii HOM05D003118 ORTHO05D003898 2.9e-09 65.1 70 47.1
arahy.Tifrunner.gnm1.ann1.0MAW8U Arachis hypogaea HOM05D003349 ORTHO05D003898 4.9e-09 64.3 42 78.6
Sc13g0002710 Simmondsia chinensis HOM05D003349 ORTHO05D003898 6.4e-09 63.9 49 67.3
SEGI_09484 Sequoiadendron giganteum HOM05D003349 ORTHO05D003898 7.8e-07 57.0 75 46.7
SEGI_29772 Sequoiadendron giganteum HOM05D003349 ORTHO05D003898 7.8e-07 57.0 75 46.7
SMO364G0157 Selaginella moellendorffii HOM05D003349 ORTHO05D003898 1.0e-06 56.6 74 43.2


User provided reference genes

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