Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 6.6e-254 880.2 433 100.0
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 1.1e-232 809.7 409 97.3
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 2.8e-228 795.0 409 94.6
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 1.1e-221 773.1 406 92.4
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 3.1e-219 765.0 406 91.6
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 4.1e-219 764.6 406 91.1
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 2.6e-218 761.9 409 89.5
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 2.6e-218 761.9 409 90.0
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.6e-218 761.9 409 90.0
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 5.9e-218 760.8 406 91.1
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 5.9e-218 760.8 409 89.5
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 7.7e-218 760.4 410 89.5
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 1.3e-217 759.6 408 89.5
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.7e-217 759.2 406 90.9
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.2e-217 758.8 406 91.1
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 5.0e-217 757.7 409 89.0
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 6.5e-217 757.3 406 90.6
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 1.1e-216 756.5 409 89.0
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.1e-216 756.5 409 89.0
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.4e-216 756.1 406 90.6
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 1.9e-216 755.7 409 88.8
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 2.5e-216 755.4 409 87.8
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.5e-216 755.4 409 88.5
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 4.2e-216 754.6 409 88.8
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 5.5e-216 754.2 405 89.1
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 5.5e-216 754.2 406 89.4
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 7.2e-216 753.8 406 89.4
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 9.4e-216 753.4 406 89.4
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.2e-215 753.1 406 90.1
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 2.1e-215 752.3 409 88.3
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 2.1e-215 752.3 408 88.7
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 3.6e-215 751.5 409 88.5
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 7.9e-215 750.4 406 88.9
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 1.4e-214 749.6 409 88.5
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 1.4e-214 749.6 404 87.9
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 1.8e-214 749.2 406 88.7
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.8e-214 749.2 409 87.5
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 2.3e-214 748.8 409 88.3
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 2.3e-214 748.8 385 94.3
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 3.0e-214 748.4 410 88.3
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 3.9e-214 748.0 404 88.1
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 5.1e-214 747.7 409 87.8
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 6.7e-214 747.3 404 87.9
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 8.8e-214 746.9 409 87.3
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 1.1e-213 746.5 404 87.6
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 4.3e-213 744.6 404 87.4
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 5.7e-213 744.2 404 87.9
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 7.4e-213 743.8 409 87.3
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 9.7e-213 743.4 405 86.9
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 9.7e-213 743.4 406 88.4
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 1.7e-212 742.7 410 88.3
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 2.8e-212 741.9 406 87.4
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 4.8e-212 741.1 409 85.6
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 6.3e-212 740.7 406 87.2
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 8.2e-212 740.3 410 88.3
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 1.1e-211 740.0 404 87.4
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 1.1e-211 740.0 411 87.6
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 1.4e-211 739.6 406 86.9
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.4e-211 739.6 406 87.4
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 1.8e-211 739.2 407 86.5
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 2.4e-211 738.8 406 87.7
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 2.4e-211 738.8 406 86.7
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 3.1e-211 738.4 404 87.1
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 3.1e-211 738.4 409 86.6
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 4.1e-211 738.0 409 86.3
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 4.1e-211 738.0 406 87.4
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 6.9e-211 737.3 425 85.2
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 2.0e-210 735.7 409 85.3
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 2.0e-210 735.7 452 80.5
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 2.0e-210 735.7 411 85.9
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 2.6e-210 735.3 409 85.1
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 2.6e-210 735.3 410 86.3
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 1.3e-209 733.0 409 86.1
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 1.3e-209 733.0 406 86.5
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.3e-209 733.0 409 85.6
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 3.8e-209 731.5 409 85.8
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 3.8e-209 731.5 409 86.1
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 6.5e-209 730.7 405 86.2
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 6.5e-209 730.7 410 85.6
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 8.5e-209 730.3 409 85.3
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 1.1e-208 729.9 409 85.6
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 1.4e-208 729.6 409 86.1
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 1.9e-208 729.2 421 84.3
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 2.5e-208 728.8 416 85.3
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 3.2e-208 728.4 410 84.1
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 4.2e-208 728.0 410 84.1
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 5.5e-208 727.6 409 85.6
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 5.5e-208 727.6 406 85.7
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 9.4e-208 726.9 413 84.5
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 9.4e-208 726.9 413 84.5
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 9.4e-208 726.9 407 86.0
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 9.4e-208 726.9 406 86.9
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 2.1e-207 725.7 413 84.7
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 2.7e-207 725.3 413 84.5
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 3.6e-207 724.9 407 84.3
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 4.7e-207 724.5 400 87.8
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 6.1e-207 724.2 448 79.9
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 7.9e-207 723.8 436 81.4
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 1.4e-206 723.0 409 84.6
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 1.4e-206 723.0 412 84.7
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.4e-206 723.0 418 84.4
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 6.7e-206 720.7 410 84.9
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 1.5e-205 719.5 409 83.6
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 2.0e-205 719.2 409 83.4
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 2.0e-205 719.2 410 84.9
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 4.4e-205 718.0 476 76.3
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.8e-203 712.6 406 83.5
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 2.4e-203 712.2 406 83.0
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 4.1e-203 711.4 383 90.3
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 5.9e-202 707.6 405 83.0
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 2.5e-200 702.2 405 82.7
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 4.7e-199 698.0 377 89.1
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 1.5e-197 693.0 520 68.5
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 3.3e-197 691.8 452 74.3
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 2.2e-196 689.1 394 84.0
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 2.0e-194 682.6 412 81.3
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 4.5e-194 681.4 415 80.7
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 3.2e-192 675.2 413 79.2
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 1.8e-190 669.5 358 89.9
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 3.1e-187 658.7 356 87.9
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 5.3e-187 657.9 409 76.3
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 7.7e-186 654.1 403 78.9
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 3.2e-184 648.7 379 81.5
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 1.4e-182 643.3 358 86.0
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 3.5e-178 628.6 406 76.8
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 2.7e-170 602.4 405 70.6
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 4.5e-170 601.7 404 71.0
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 2.3e-169 599.4 406 72.2
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 3.3e-168 595.5 320 88.4
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 2.8e-167 592.4 380 71.8
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 1.1e-158 563.9 400 68.0
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 1.1e-155 553.9 418 68.2
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 1.1e-155 553.9 387 73.1
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 3.2e-147 525.8 334 76.6
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 5.8e-141 505.0 310 80.3
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 1.3e-137 493.8 400 61.2
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 1.4e-131 473.8 258 87.6
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 3.9e-129 465.7 245 91.4
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 1.6e-122 443.7 368 60.6
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 3.0e-121 439.5 239 87.9
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 1.1e-115 421.0 385 54.8
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 1.3e-113 414.1 225 87.6
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 4.5e-109 399.1 241 79.3
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 3.6e-98 362.8 195 90.3
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 8.5e-76 288.5 419 40.8
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 5.7e-72 275.8 390 42.8
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 2.4e-70 270.4 183 74.3
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 1.9e-67 260.8 180 69.4
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 1.8e-54 217.6 124 83.1
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 2.4e-54 217.2 141 71.6
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 4.1e-54 216.5 140 72.1
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.2e-48 198.4 130 76.2
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 1.1e-19 102.1 128 46.9
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.9e-19 101.3 58 77.6
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 1.6e-10 71.6 334 23.4
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 5.3e-09 66.6 338 23.1


User provided reference genes

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