Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0126400 Salix brachista HOM05D004594 ORTHO05D005225 0.0e+00 2540.4 1497 100.0
Potri.010G166100 Populus trichocarpa HOM05D004594 ORTHO05D005225 0.0e+00 1973.7 1502 82.2
Manes.01G034200 Manihot esculenta HOM05D004594 ORTHO05D005225 0.0e+00 1264.2 1495 59.4
Manes.05G104800 Manihot esculenta HOM05D004594 ORTHO05D005225 0.0e+00 1236.5 1491 57.1
Haze_11988 Corylus avellana HOM05D004594 ORTHO05D005225 0.0e+00 1187.6 1535 55.2
Dinv02961 Davidia involucrata HOM05D004594 ORTHO05D005225 0.0e+00 1176.8 1512 53.5
Cfa008959 Carpinus fangiana HOM05D004594 ORTHO05D005225 0.0e+00 1143.3 1506 54.7
QL03p068116 Quercus lobata HOM05D004594 ORTHO05D005225 0.0e+00 1118.2 1531 52.8
Ciclev10030522m.g Citrus clementina HOM05D004594 ORTHO05D005225 0.0e+00 1095.1 1467 50.7
TWI75G1472 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 0.0e+00 1093.2 1572 49.8
CiPaw.06G087400 Carya illinoinensis HOM05D004594 ORTHO05D005225 0.0e+00 1090.5 1502 50.5
Duzib248G1210 Durio zibethinus HOM05D004594 ORTHO05D005225 0.0e+00 1075.1 1495 51.6
MD16G1069300 Malus domestica HOM05D004594 ORTHO05D005225 1.9e-308 1063.1 1522 52.5
GSVIVG01019950001 Vitis vinifera HOM05D004594 ORTHO05D005225 1.9e-308 1063.1 1517 49.6
TWI79G0308 Tripterygium wilfordii HOM05D004594 ORTHO05D005225 2.8e-307 1059.3 1538 49.9
CANSAT64G0453 Cannabis sativa HOM05D004594 ORTHO05D005225 1.6e-302 1043.5 1520 50.5
Actinidia11790 Actinidia chinensis HOM05D004594 ORTHO05D005225 2.7e-302 1042.7 1560 50.1
CiPaw.05G132100 Carya illinoinensis HOM05D004594 ORTHO05D005225 5.9e-302 1041.6 1439 52.5
Eucgr.G02485 Eucalyptus grandis HOM05D004594 ORTHO05D005225 4.0e-298 1028.9 1528 48.3
FAN07G2218 Fragaria x ananassa HOM05D004594 ORTHO05D005225 4.9e-296 1021.9 1507 50.1
FAN17G1193 Fragaria x ananassa HOM05D004594 ORTHO05D005225 6.4e-296 1021.5 1507 50.4
FvH4_4g31060 Fragaria vesca HOM05D004594 ORTHO05D005225 1.1e-295 1020.8 1507 50.3
Thecc.02G342500 Theobroma cacao HOM05D004594 ORTHO05D005225 1.1e-295 1020.8 1493 50.5
FAN22G0563 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.9e-295 1020.0 1506 49.9
Prupe.1G277900 Prunus persica HOM05D004594 ORTHO05D005225 6.0e-294 1015.0 1501 50.6
ClCG09G021930 Citrullus lanatus HOM05D004594 ORTHO05D005225 3.0e-293 1012.7 1594 48.4
RcHm_v2.0_Chr4g0439441 Rosa chinensis HOM05D004594 ORTHO05D005225 1.5e-292 1010.4 1511 49.4
Gohir.D04G191200 Gossypium hirsutum HOM05D004594 ORTHO05D005225 3.1e-290 1002.7 1510 49.6
Gorai.012G186600 Gossypium raimondii HOM05D004594 ORTHO05D005225 9.2e-287 991.1 1507 48.7
FAN12G0764 Fragaria x ananassa HOM05D004594 ORTHO05D005225 1.2e-286 990.7 1532 49.0
Sed0022637 Sechium edule HOM05D004594 ORTHO05D005225 2.1e-286 989.9 1523 47.7
CsaV3_5G025180 Cucumis sativus L. HOM05D004594 ORTHO05D005225 2.5e-284 983.0 1552 47.4
Phvul.003G045700 Phaseolus vulgaris HOM05D004594 ORTHO05D005225 2.1e-278 963.4 1523 47.7
MELO3C002967.2 Cucumis melo HOM05D004594 ORTHO05D005225 2.7e-278 963.0 1555 47.1
Ca_04825_v3 Cicer arietinum L. HOM05D004594 ORTHO05D005225 1.7e-272 943.7 1561 45.9
Glyma.01G051400 Glycine max HOM05D004594 ORTHO05D005225 1.9e-271 940.3 1541 47.0
TAR371G0293 Trochodendron aralioides HOM05D004594 ORTHO05D005225 2.4e-271 939.9 1531 46.3
VMungo1215G3128 Vigna mungo HOM05D004594 ORTHO05D005225 1.7e-269 933.7 1532 46.3
Glyma.02G109900 Glycine max HOM05D004594 ORTHO05D005225 1.5e-265 920.6 1541 45.9
Lalb_Chr10g0098431 Lupinus albus HOM05D004594 ORTHO05D005225 8.4e-264 914.8 1561 45.2
arahy.Tifrunner.gnm1.ann1.8R27D6 Arachis hypogaea HOM05D004594 ORTHO05D005225 1.4e-263 914.1 1575 47.0
DCAR_013185 Daucus carota HOM05D004594 ORTHO05D005225 2.1e-262 910.2 1512 46.2
Psat2g116320 Pisum sativum HOM05D004594 ORTHO05D005225 8.7e-261 904.8 1574 45.4
AUR62035898 Chenopodium quinoa HOM05D004594 ORTHO05D005225 4.8e-259 899.0 1499 44.0
Nn1g04524 Nelumbo nucifera HOM05D004594 ORTHO05D005225 6.2e-259 898.7 1515 46.7
Rhsim09G0077000 Rhododendron simsii HOM05D004594 ORTHO05D005225 2.4e-258 896.7 1593 44.2
EL10Ac3g06731 Beta vulgaris HOM05D004594 ORTHO05D005225 9.9e-257 891.3 1513 46.2
PGR119G1944 Punica granatum HOM05D004594 ORTHO05D005225 5.5e-255 885.6 1503 45.6
Sopen04g003850 Solanum pennellii HOM05D004594 ORTHO05D005225 2.0e-249 867.1 1519 43.5
Hund25219 Selenicereus undatus HOM05D004594 ORTHO05D005225 4.5e-249 865.9 1506 44.0
Lj2g0016635 Lotus japonicus HOM05D004594 ORTHO05D005225 1.3e-248 864.4 1527 44.6
CAN.G194.5 Capsicum annuum HOM05D004594 ORTHO05D005225 3.9e-245 852.8 1523 43.5
Peaxi162Scf00329g00617 Petunia axillaris HOM05D004594 ORTHO05D005225 5.1e-245 852.4 1521 45.0
Cc00_g08470 Coffea canephora HOM05D004594 ORTHO05D005225 8.7e-245 851.7 1540 41.6
arahy.Tifrunner.gnm1.ann1.KB2NSX Arachis hypogaea HOM05D004594 ORTHO05D005225 2.1e-243 847.0 1685 44.2
Aqoxy3G03454 Aquilegia oxysepala HOM05D004594 ORTHO05D005225 2.4e-242 843.6 1502 45.8
AUR62035342 Chenopodium quinoa HOM05D004594 ORTHO05D005225 8.4e-240 835.1 1471 42.1
PSO832G1080 Papaver somniferum HOM05D004594 ORTHO05D005225 4.2e-239 832.8 1512 44.4
Nitab4.5_0000129g0280 Nicotiana tabacum HOM05D004594 ORTHO05D005225 2.1e-238 830.5 1517 43.3
TAR629G1990 Trochodendron aralioides HOM05D004594 ORTHO05D005225 3.0e-237 826.6 1363 47.6
Solyc04g008680.4 Solanum lycopersicum HOM05D004594 ORTHO05D005225 1.4e-234 817.8 1440 44.4
Atru.chr11.1750 Acer truncatum HOM05D004594 ORTHO05D005225 4.5e-233 812.8 792 61.7
PSO013G0146 Papaver somniferum HOM05D004594 ORTHO05D005225 5.5e-231 805.8 1498 42.6
Cpa.g.sc25.130 Carica papaya HOM05D004594 ORTHO05D005225 7.4e-228 795.4 1537 44.8
Migut.E00588 Erythranthe guttata HOM05D004594 ORTHO05D005225 3.1e-226 790.0 1523 41.3
CARHR145490 Cardamine hirsuta HOM05D004594 ORTHO05D005225 1.0e-224 785.0 1569 41.1
Carub.0005s0198 Capsella rubella HOM05D004594 ORTHO05D005225 6.1e-222 775.8 1548 43.0
Sc11g0002090 Simmondsia chinensis HOM05D004594 ORTHO05D005225 1.1e-220 771.5 1243 47.0
Lsat_1_v5_gn_3_33900 Lactuca sativa HOM05D004594 ORTHO05D005225 5.3e-218 762.7 1502 42.7
THA.LOC104824075 Tarenaya hassleriana HOM05D004594 ORTHO05D005225 1.2e-217 761.5 1537 42.3
ECA233G5935 Erigeron canadensis HOM05D004594 ORTHO05D005225 1.6e-217 761.1 1502 42.7
Ah.13g075020 Amaranthus hybridus HOM05D004594 ORTHO05D005225 1.7e-216 757.7 1531 41.1
TPR.G34709 Trifolium pratense HOM05D004594 ORTHO05D005225 2.2e-216 757.3 1519 41.9
Nitab4.5_0001419g0070 Nicotiana tabacum HOM05D004594 ORTHO05D005225 6.5e-216 755.7 1573 40.2
AL5G12800 Arabidopsis lyrata HOM05D004594 ORTHO05D005225 8.8e-213 745.3 1539 41.8
ECA246G2651 Erigeron canadensis HOM05D004594 ORTHO05D005225 3.7e-211 740.0 1564 41.6
Medtr5g042000 Medicago truncatula HOM05D004594 ORTHO05D005225 1.4e-210 738.0 1654 40.6
AT2G03150 Arabidopsis thaliana HOM05D004594 ORTHO05D005225 6.1e-206 722.6 1539 40.7
C09p31000 Brassica napus HOM05D004594 ORTHO05D005225 1.8e-202 711.1 1505 41.7
Sp2g14100 Schrenkiella parvula HOM05D004594 ORTHO05D005225 4.1e-202 709.9 1554 39.9
BcaC04g21505 Brassica carinata HOM05D004594 ORTHO05D005225 3.5e-201 706.8 1506 41.6
BcaB07g30683 Brassica carinata HOM05D004594 ORTHO05D005225 2.2e-200 704.1 1514 41.3
A09p24110 Brassica napus HOM05D004594 ORTHO05D005225 4.2e-199 699.9 1512 41.1
BraA09t38011Z Brassica rapa HOM05D004594 ORTHO05D005225 4.2e-199 699.9 1512 41.1
BolC9t55959H Brassica oleracea HOM05D004594 ORTHO05D005225 1.6e-198 698.0 1506 41.2
Oeu044046.4 Olea europaea HOM05D004594 ORTHO05D005225 4.7e-198 696.4 1349 41.1
SGA_v2.0_scaffold140G35452 Striga asiatica HOM05D004594 ORTHO05D005225 4.9e-195 686.4 1566 38.7
Thhalv10005550m.g Eutrema salsugineum HOM05D004594 ORTHO05D005225 2.0e-193 681.0 1551 41.1
HanXRQChr08g0224741 Helianthus annuus HOM05D004594 ORTHO05D005225 1.1e-191 675.2 1485 40.3
Aa31LG2G7300 Aethionema arabicum HOM05D004594 ORTHO05D005225 9.5e-191 672.2 1544 39.4
Lsat_1_v5_gn_8_32581 Lactuca sativa HOM05D004594 ORTHO05D005225 3.9e-184 650.2 1501 39.2
MBI06_g33529_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 8.1e-174 615.9 1078 41.7
CDE07G1889 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 2.0e-172 611.3 1513 37.0
HanXRQChr17g0540651 Helianthus annuus HOM05D004594 ORTHO05D005225 2.2e-171 607.8 1450 42.6
ATR0564G229 Amborella trichopoda HOM05D004594 ORTHO05D005225 1.6e-169 601.7 1525 37.6
SHI24774 Sapria himalayana HOM05D004594 ORTHO05D005225 2.8e-158 564.3 1259 35.2
Gohir.A04G146601 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.1e-153 548.1 621 57.5
HanXRQChr14g0429131 Helianthus annuus HOM05D004594 ORTHO05D005225 5.1e-152 543.5 1363 38.7
Zm00001eb384230 Zea mays HOM05D004594 ORTHO05D005225 1.9e-138 498.4 1561 34.3
CDE04G0114 Ceratophyllum demersum HOM05D004594 ORTHO05D005225 2.1e-137 495.0 1466 32.3
HPP92_001998 Vanilla planifolia HOM05D004594 ORTHO05D005225 4.3e-127 460.7 1327 35.4
HanXRQChr08g0225211 Helianthus annuus HOM05D004594 ORTHO05D005225 9.7e-127 459.5 1351 34.9
unitig_52.g17301 Utricularia gibba HOM05D004594 ORTHO05D005225 6.5e-123 446.8 836 39.8
Gohir.1Z049516 Gossypium hirsutum HOM05D004594 ORTHO05D005225 1.1e-119 436.0 753 46.3
Zm00001eb277410 Zea mays HOM05D004594 ORTHO05D005225 1.3e-118 432.6 1528 34.6
C02p51140 Brassica napus HOM05D004594 ORTHO05D005225 1.2e-113 416.0 1384 31.9
SEGI_16638 Sequoiadendron giganteum HOM05D004594 ORTHO05D005225 1.2e-79 303.1 1579 30.0
vmacro10769 Vaccinium macrocarpon HOM05D004594 ORTHO05D005225 2.0e-79 302.4 819 40.8
Atru.chr11.1748 Acer truncatum HOM05D004594 ORTHO05D005225 5.9e-76 290.8 427 53.4
Pp3c12_12730 Physcomitrium patens HOM05D004594 ORTHO05D005225 3.6e-65 255.0 1434 26.0
Pp3c4_10880 Physcomitrium patens HOM05D004594 ORTHO05D005225 7.8e-52 210.7 1432 25.0
Mapoly0102s0024 Marchantia polymorpha HOM05D004594 ORTHO05D005225 2.3e-51 209.1 1576 24.4
SMO172G0003 Selaginella moellendorffii HOM05D004594 ORTHO05D005225 1.5e-50 206.5 1246 28.2
AagrBONN_evm.TU.Sc2ySwM_340.1878 Anthoceros agrestis HOM05D004594 ORTHO05D005225 3.3e-50 205.3 1460 24.3
CBR_g5747 Chara braunii HOM05D004594 ORTHO05D005225 5.6e-50 204.5 409 31.1
Lj3E852T1 Lonicera japonica HOM05D004594 ORTHO05D005225 1.7e-46 193.0 235 49.8
unitig_52.g17300 Utricularia gibba HOM05D004594 ORTHO05D005225 3.4e-39 168.7 384 39.6
BcaC03g17185 Brassica carinata HOM05D004594 ORTHO05D005225 4.6e-36 158.3 342 39.2
Rhsim04G0150600 Rhododendron simsii HOM05D004594 ORTHO05D005225 1.5e-34 153.3 201 45.8
Lj3E852G2 Lonicera japonica HOM05D004594 ORTHO05D005225 3.1e-32 145.6 238 50.4
Os06g0562700 Oryza sativa ssp. japonica HOM05D004594 ORTHO05D005225 1.9e-29 136.3 424 41.5
Oeu034639.1 Olea europaea HOM05D004594 ORTHO05D005225 1.2e-28 133.7 221 42.1
Lj3A852T53 Lonicera japonica HOM05D004594 ORTHO05D005225 3.0e-27 129.0 136 55.9
Oeu032954.1 Olea europaea HOM05D004594 ORTHO05D005225 6.7e-27 127.9 119 52.9
Gohir.1Z049616 Gossypium hirsutum HOM05D004594 ORTHO05D005225 2.1e-25 122.9 286 48.6
Potri.008G089401 Populus trichocarpa HOM05D059499 ORTHO05D050569 4.5e-23 115.2 128 74.2
BolC2t11204H Brassica oleracea HOM05D004594 ORTHO05D005225 4.2e-21 108.6 342 35.4
TPR.G11445 Trifolium pratense HOM05D004594 ORTHO05D005225 5.5e-21 108.2 64 84.4
Lsat_1_v5_gn_3_92661 Lactuca sativa HOM05D004594 ORTHO05D005225 7.9e-20 104.4 83 59.0
MBI02_g24139_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 3.9e-19 102.1 74 63.5
Actinidia04099 Actinidia chinensis HOM05D004594 ORTHO05D005225 5.1e-19 101.7 261 37.2
Lsat_1_v5_gn_4_108040 Lactuca sativa HOM05D004594 ORTHO05D005225 2.1e-17 96.3 64 64.1
CBR_g5749 Chara braunii HOM05D004594 ORTHO05D005225 5.3e-16 91.7 315 32.4
Atru.chr11.1749 Acer truncatum HOM05D004594 ORTHO05D005225 5.8e-15 88.2 166 41.6
Lsat_1_v5_gn_1_53021 Lactuca sativa HOM05D004594 ORTHO05D005225 3.8e-14 85.5 60 65.0
QL03p068420 Quercus lobata HOM05D004594 ORTHO05D005225 6.5e-14 84.7 283 31.4
Actinidia04098 Actinidia chinensis HOM05D004594 ORTHO05D005225 2.5e-13 82.8 181 35.9
A02p33250 Brassica napus HOM05D004594 ORTHO05D005225 2.5e-13 82.8 79 51.9
SHI24778 Sapria himalayana HOM05D004594 ORTHO05D005225 5.5e-13 81.6 137 43.8
MBI02_g24140_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.0e-11 77.4 115 43.5
Cre06.g283634 Chlamydomonas reinhardtii HOM05D004594 ORTHO05D005225 6.7e-11 74.7 318 23.9
BcaB05g23630 Brassica carinata HOM05D004594 ORTHO05D005225 8.7e-11 74.3 159 33.3
HPP92_001999 Vanilla planifolia HOM05D004594 ORTHO05D005225 5.7e-10 71.6 91 45.1
MBI05_g14664_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 4.8e-09 68.6 77 48.1
Potri.008G089100 Populus trichocarpa HOM05D004340 ORTHO05D005225 6.3e-09 68.2 54 66.7
MBI07_g23220_MAGBIO Magnolia biondii HOM05D004594 ORTHO05D005225 1.8e-08 66.6 103 37.9
BraA02t08348Z Brassica rapa HOM05D004594 ORTHO05D005225 6.9e-08 64.7 41 65.9
A02p33260 Brassica napus HOM05D004594 ORTHO05D005225 1.2e-07 63.9 77 45.5
RcHm_v2.0_Chr3g0458311 Rosa chinensis HOM05D004594 ORTHO05D005225 5.9e-07 61.6 92 39.1
QL03p068414 Quercus lobata HOM05D004594 ORTHO05D005225 1.0e-06 60.8 57 50.9
Nn3g17298 Nelumbo nucifera HOM05D004594 ORTHO05D005225 1.3e-06 60.5 86 38.4


User provided reference genes

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