Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0117500 Salix brachista HOM05D005298 ORTHO05D008015 0.0e+00 2055.4 1093 100.0
Potri.010G152700 Populus trichocarpa HOM05D005298 ORTHO05D008015 0.0e+00 1898.2 1095 92.6
Manes.15G003700 Manihot esculenta HOM05D005298 ORTHO05D008015 0.0e+00 1477.2 1093 71.9
Cfa015712 Carpinus fangiana HOM05D005298 ORTHO05D008015 0.0e+00 1473.8 1092 69.1
Dinv29532 Davidia involucrata HOM05D005298 ORTHO05D008015 0.0e+00 1443.7 1093 70.7
QL06p013696 Quercus lobata HOM05D005298 ORTHO05D008015 0.0e+00 1438.7 1142 69.2
Atru.chr4.3122 Acer truncatum HOM05D005298 ORTHO05D008015 0.0e+00 1432.9 1088 69.8
Thecc.04G309800 Theobroma cacao HOM05D005298 ORTHO05D008015 0.0e+00 1430.6 1095 70.4
Prupe.1G109100 Prunus persica HOM05D005298 ORTHO05D008015 0.0e+00 1425.6 1095 68.8
Haze_00801 Corylus avellana HOM05D005298 ORTHO05D008015 0.0e+00 1416.7 1094 67.6
MD16G1139700 Malus domestica HOM05D005298 ORTHO05D008015 0.0e+00 1407.9 1098 67.9
CSS0017624 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 0.0e+00 1386.3 1094 67.3
COL.COLO4_34539 Corchorus olitorius HOM05D005298 ORTHO05D008015 0.0e+00 1384.8 1091 68.7
Ciclev10004217m.g Citrus clementina HOM05D005298 ORTHO05D008015 0.0e+00 1379.4 1090 68.7
RcHm_v2.0_Chr4g0426661 Rosa chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1373.6 1098 67.7
Gorai.005G070900 Gossypium raimondii HOM05D005298 ORTHO05D008015 0.0e+00 1370.9 1095 68.1
Gohir.D02G063000 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1364.0 1097 67.7
Gohir.A02G057201 Gossypium hirsutum HOM05D005298 ORTHO05D008015 0.0e+00 1348.6 1095 67.3
Rhsim04G0246500 Rhododendron simsii HOM05D005298 ORTHO05D008015 0.0e+00 1346.6 1100 65.9
FAN17G0175 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1339.7 1097 65.5
Hma1.2p1_0013F.1_g008000 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 0.0e+00 1334.7 1092 65.3
Lj4g0022536 Lotus japonicus HOM05D005298 ORTHO05D008015 0.0e+00 1332.8 1098 65.0
FvH4_4g21110 Fragaria vesca HOM05D005298 ORTHO05D008015 0.0e+00 1330.5 1097 65.3
CiPaw.01G131300 Carya illinoinensis HOM05D005298 ORTHO05D008015 0.0e+00 1328.2 974 69.7
arahy.Tifrunner.gnm1.ann1.68EF5E Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1323.5 1097 64.4
FAN07G1807 Fragaria x ananassa HOM05D005298 ORTHO05D008015 0.0e+00 1322.4 1114 64.3
Lalb_Chr07g0181831 Lupinus albus HOM05D005298 ORTHO05D008015 0.0e+00 1320.4 1096 65.0
Glyma.07G233500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1314.7 1102 63.9
Aqoxy2G02567 Aquilegia oxysepala HOM05D005298 ORTHO05D008015 0.0e+00 1311.6 1088 64.8
Glyma.17G038500 Glycine max HOM05D005298 ORTHO05D008015 0.0e+00 1304.3 1103 62.8
Phvul.003G119400 Phaseolus vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1300.8 1101 62.8
Psat0ss1196g0600 Pisum sativum HOM05D005298 ORTHO05D008015 0.0e+00 1298.5 1098 63.3
PGR004G2663 Punica granatum HOM05D005298 ORTHO05D008015 0.0e+00 1295.4 1073 65.1
TPR.G12648 Trifolium pratense HOM05D005298 ORTHO05D008015 0.0e+00 1294.6 1099 63.4
VMungo1215G2609 Vigna mungo HOM05D005298 ORTHO05D008015 0.0e+00 1293.9 1104 63.0
TAR362G0426 Trochodendron aralioides HOM05D005298 ORTHO05D008015 0.0e+00 1288.9 1058 66.4
arahy.Tifrunner.gnm1.ann1.WSVI3W Arachis hypogaea HOM05D005298 ORTHO05D008015 0.0e+00 1280.8 1099 63.0
MBI18_g28901_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 0.0e+00 1277.3 1091 64.1
Lj3A839G57 Lonicera japonica HOM05D005298 ORTHO05D008015 0.0e+00 1275.8 1076 62.1
Eucgr.H04107 Eucalyptus grandis HOM05D005298 ORTHO05D008015 0.0e+00 1272.7 1095 63.6
Oeu020287.1 Olea europaea HOM05D005298 ORTHO05D008015 0.0e+00 1271.9 1094 62.4
Ca_21388_v3 Cicer arietinum L. HOM05D005298 ORTHO05D008015 0.0e+00 1270.8 1058 64.7
Sed0008409 Sechium edule HOM05D005298 ORTHO05D008015 0.0e+00 1257.7 1100 61.4
CsaV3_6G000130 Cucumis sativus L. HOM05D005298 ORTHO05D008015 0.0e+00 1253.0 1096 60.8
TWI09G0537 Tripterygium wilfordii HOM05D005298 ORTHO05D008015 0.0e+00 1224.2 1111 63.1
CANSAT78G1118 Cannabis sativa HOM05D005298 ORTHO05D008015 0.0e+00 1221.1 1101 62.2
Actinidia18497 Actinidia chinensis HOM05D005298 ORTHO05D008015 0.0e+00 1213.7 1093 62.1
EL10Ac3g06277 Beta vulgaris HOM05D005298 ORTHO05D008015 0.0e+00 1210.3 1088 58.5
PSO210G1072 Papaver somniferum HOM05D005298 ORTHO05D008015 0.0e+00 1195.3 1101 59.7
Duzib151G1192 Durio zibethinus HOM05D005298 ORTHO05D008015 0.0e+00 1194.5 1094 62.2
DCAR_002539 Daucus carota HOM05D005298 ORTHO05D008015 0.0e+00 1181.0 1074 61.0
Sopen01g022220 Solanum pennellii HOM05D005298 ORTHO05D008015 0.0e+00 1179.5 1093 59.0
Peaxi162Scf00126g10123 Petunia axillaris HOM05D005298 ORTHO05D008015 0.0e+00 1178.3 1094 59.0
Solyc01g057520.4 Solanum lycopersicum HOM05D005298 ORTHO05D008015 0.0e+00 1175.6 1093 58.8
ClCG06G004280 Citrullus lanatus HOM05D005298 ORTHO05D008015 0.0e+00 1173.7 1196 54.5
Nitab4.5_0000169g0140 Nicotiana tabacum HOM05D005298 ORTHO05D008015 0.0e+00 1173.7 1095 59.5
Thhalv10019950m.g Eutrema salsugineum HOM05D005298 ORTHO05D008015 0.0e+00 1172.1 1092 59.2
Sp3g15510 Schrenkiella parvula HOM05D005298 ORTHO05D008015 0.0e+00 1159.1 1092 58.2
Ah.07g203800 Amaranthus hybridus HOM05D005298 ORTHO05D008015 0.0e+00 1144.4 1084 57.0
C05p49050 Brassica napus HOM05D005298 ORTHO05D008015 0.0e+00 1140.2 1093 59.1
Nitab4.5_0000992g0090 Nicotiana tabacum HOM05D005298 ORTHO05D008015 0.0e+00 1138.3 1115 57.7
ECA233G2380 Erigeron canadensis HOM05D005298 ORTHO05D008015 0.0e+00 1135.6 1095 58.4
AT3G17340 Arabidopsis thaliana HOM05D005298 ORTHO05D008015 0.0e+00 1134.8 1092 57.8
BolC5t33645H Brassica oleracea HOM05D005298 ORTHO05D008015 0.0e+00 1131.7 1098 58.6
vmacro07993 Vaccinium macrocarpon HOM05D005298 ORTHO05D008015 0.0e+00 1131.7 1171 55.9
AL3G30390 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 0.0e+00 1130.9 1093 57.3
Nn3g21868 Nelumbo nucifera HOM05D005298 ORTHO05D008015 0.0e+00 1127.1 1092 57.4
Cpa.g.sc146.46 Carica papaya HOM05D005298 ORTHO05D008015 0.0e+00 1117.8 1092 58.8
Aa31LG8G4260 Aethionema arabicum HOM05D005298 ORTHO05D008015 0.0e+00 1117.4 1126 57.5
BcaC05g28796 Brassica carinata HOM05D005298 ORTHO05D008015 0.0e+00 1109.0 1063 59.3
ATR0796G315 Amborella trichopoda HOM05D005298 ORTHO05D008015 0.0e+00 1096.6 1094 54.3
BraA05t22069Z Brassica rapa HOM05D005298 ORTHO05D008015 0.0e+00 1096.3 1092 57.3
CAN.G14.34 Capsicum annuum HOM05D005298 ORTHO05D008015 0.0e+00 1096.3 1013 56.7
A05p32420 Brassica napus HOM05D005298 ORTHO05D008015 0.0e+00 1094.7 1092 57.4
Carub.0003s1705 Capsella rubella HOM05D005298 ORTHO05D008015 0.0e+00 1092.8 1092 56.4
MELO3C021240.2 Cucumis melo HOM05D005298 ORTHO05D008015 0.0e+00 1091.3 1114 55.8
Lsat_1_v5_gn_6_69380 Lactuca sativa HOM05D005298 ORTHO05D008015 3.8e-306 1055.0 1034 58.3
AUR62029998 Chenopodium quinoa HOM05D005298 ORTHO05D008015 1.2e-304 1050.0 1084 52.3
Zm00001eb164790 Zea mays HOM05D005298 ORTHO05D008015 4.2e-297 1025.0 1088 52.5
Os11g0695900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D008015 1.3e-293 1013.4 1094 51.1
HanXRQChr09g0251541 Helianthus annuus HOM05D005298 ORTHO05D008015 5.2e-287 991.5 1113 54.2
GSVIVG01017664001 Vitis vinifera HOM05D005298 ORTHO05D008015 9.7e-286 987.3 1101 54.2
Mapoly0002s0222 Marchantia polymorpha HOM05D005298 ORTHO05D008015 4.7e-232 808.9 1111 44.9
GSVIVG01034907001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.9e-229 799.7 600 69.0
Pp3c21_7100 Physcomitrium patens HOM05D005298 ORTHO05D008015 6.6e-226 788.5 1105 43.1
Pp3c21_7106 Physcomitrium patens HOM05D005298 ORTHO05D008015 6.6e-226 788.5 1105 43.1
CSS0004853 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 1.1e-223 781.2 750 57.6
CARHR092660 Cardamine hirsuta HOM05D005298 ORTHO05D008015 1.4e-223 780.8 644 63.2
Pp3c27_6680 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.2e-206 724.5 1140 40.6
Medtr4g123670 Medicago truncatula HOM05D005298 ORTHO05D008015 4.2e-196 689.5 631 60.5
SMO200G0212 Selaginella moellendorffii HOM05D005298 ORTHO05D008015 1.1e-185 654.8 1004 38.6
MD15G1386700 Malus domestica HOM05D005298 ORTHO05D008015 7.7e-182 642.1 500 63.0
Pp3c1_32943 Physcomitrium patens HOM05D005298 ORTHO05D008015 2.2e-176 624.0 1061 35.2
Medtr4g123690 Medicago truncatula HOM05D005298 ORTHO05D008015 1.3e-157 561.6 435 67.4
GSVIVG01017599001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.9e-149 533.9 430 62.3
PGSC0003DMG400012034 Solanum tuberosum HOM05D005298 ORTHO05D008015 1.1e-114 419.1 437 56.8
Mapoly0011s0083 Marchantia polymorpha HOM05D005298 ORTHO05D008015 3.1e-114 417.5 804 32.3
SEGI_25654 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 3.2e-111 407.5 467 45.4
CARHR092650 Cardamine hirsuta HOM05D005298 ORTHO05D008015 3.4e-97 360.9 445 53.0
AUR62002576 Chenopodium quinoa HOM05D005298 ORTHO05D008015 3.1e-90 337.8 369 51.5
CSS0040584 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D008015 3.9e-85 320.9 220 67.3
FvH4_4g20840 Fragaria vesca HOM05D005298 ORTHO05D008015 2.0e-81 308.5 345 52.5
Cc03_g00330 Coffea canephora HOM05D005298 ORTHO05D008015 3.5e-78 297.7 410 47.6
Zm00001eb304680 Zea mays HOM05D005298 ORTHO05D008015 4.3e-76 290.8 284 54.2
Pp3c1_32940 Physcomitrium patens HOM05D005298 ORTHO05D008015 1.0e-72 279.6 448 35.9
MCO02G049 Micromonas commoda HOM05D005298 ORTHO05D008015 1.7e-64 252.3 963 25.8
PRCOL_00002040 Prasinoderma coloniale HOM05D005298 ORTHO05D008015 2.1e-62 245.4 704 26.6
CDE09G0452 Ceratophyllum demersum HOM05D005298 ORTHO05D008015 2.7e-54 218.4 671 28.9
Zm00001eb026980 Zea mays HOM05D005298 ORTHO05D008015 2.7e-46 191.8 158 61.4
TPR.G8357 Trifolium pratense HOM05D005298 ORTHO05D008015 1.1e-34 153.3 252 41.7
GSVIVG01017598001 Vitis vinifera HOM05D005298 ORTHO05D008015 2.4e-34 152.1 103 73.8
AL3G29490 Arabidopsis lyrata HOM05D005298 ORTHO05D008015 5.9e-33 147.5 159 51.6
TPR.G15154 Trifolium pratense HOM05D005298 ORTHO05D008015 1.6e-30 139.4 189 47.1
CSS0028497 Camellia sinensis var. sinensis HOM05D005298 ORTHO05D026321 1.4e-29 136.3 161 67.7
Hma1.2p1_0079F.1_g041380 Hydrangea macrophylla HOM05D005298 ORTHO05D008015 1.2e-28 133.3 90 68.9
SEGI_08042 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 2.0e-28 132.5 138 53.6
ATR0757G088 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.3e-27 129.8 119 50.4
SEGI_33872 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 3.7e-27 128.3 122 50.0
GSVIVG01017600001 Vitis vinifera HOM05D005298 ORTHO05D008015 3.7e-27 128.3 102 61.8
BcaB06g25819 Brassica carinata HOM05D005298 ORTHO05D008015 1.3e-24 119.8 215 52.1
ATR0457G001 Amborella trichopoda HOM05D005298 ORTHO05D023441 1.7e-24 119.4 123 48.0
TPR.G40673 Trifolium pratense HOM05D005298 ORTHO05D037798 2.8e-22 112.1 111 53.2
Zm00001eb026970 Zea mays HOM05D005298 ORTHO05D008015 3.6e-22 111.7 114 47.4
SEGI_24323 Sequoiadendron giganteum HOM05D005298 ORTHO05D008015 6.1e-22 110.9 105 54.3
TPR.G35281 Trifolium pratense HOM05D005298 ORTHO05D008015 6.1e-22 110.9 141 46.8
Zm00001eb183920 Zea mays HOM05D005298 ORTHO05D030733 1.8e-21 109.4 131 40.5
ATR0605G314 Amborella trichopoda HOM05D005298 ORTHO05D023441 5.2e-21 107.8 92 53.3
MBI05_g29537_MAGBIO Magnolia biondii HOM05D005298 ORTHO05D008015 2.2e-19 102.4 134 45.5
Zm00001eb187550 Zea mays HOM05D005298 ORTHO05D008015 5.4e-18 97.8 87 55.2
Zm00001eb385420 Zea mays HOM05D005298 ORTHO05D030733 5.4e-18 97.8 131 36.6
Cfa008548 Carpinus fangiana HOM05D002786 ORTHO05D003493 7.0e-18 97.4 654 22.3
Os11g0693900 Oryza sativa ssp. japonica HOM05D005298 ORTHO05D026321 7.0e-18 97.4 181 49.2
Zm00001eb082350 Zea mays HOM05D005298 ORTHO05D008015 1.2e-17 96.7 87 54.0
PSO017G6957 Papaver somniferum HOM05D002786 ORTHO05D003493 1.0e-16 93.6 649 23.4
PSO675G7863 Papaver somniferum HOM05D002786 ORTHO05D003493 2.3e-16 92.4 649 23.3
HanXRQChr03g0062991 Helianthus annuus HOM05D002786 ORTHO05D003493 8.6e-16 90.5 646 22.0
FAN17G1115 Fragaria x ananassa HOM05D002786 ORTHO05D003493 1.5e-15 89.7 652 23.0
ECA234G1297 Erigeron canadensis HOM05D002786 ORTHO05D003493 3.3e-15 88.6 647 22.6
HanXRQChr15g0471871 Helianthus annuus HOM05D002786 ORTHO05D003493 7.3e-15 87.4 648 22.4
ECA246G5341 Erigeron canadensis HOM05D002786 ORTHO05D003493 9.5e-15 87.0 635 22.2
Aa31LG5G5320 Aethionema arabicum HOM05D002786 ORTHO05D003493 2.1e-14 85.9 646 22.0
ATR0049G027 Amborella trichopoda HOM05D005298 ORTHO05D023441 2.1e-14 85.9 65 60.0
QL10p044188 Quercus lobata HOM05D002786 ORTHO05D003493 1.4e-13 83.2 653 22.1
AT3G59020 Arabidopsis thaliana HOM05D002786 ORTHO05D003493 1.8e-13 82.8 642 23.1
BolC6t37745H Brassica oleracea HOM05D002786 ORTHO05D003493 2.3e-13 82.4 642 22.7
BcaC08g44950 Brassica carinata HOM05D002786 ORTHO05D003493 3.1e-13 82.0 642 22.7
C06p25840 Brassica napus HOM05D002786 ORTHO05D003493 3.1e-13 82.0 642 22.7
BcaB02g08232 Brassica carinata HOM05D002786 ORTHO05D003493 4.0e-13 81.6 635 21.7
BcaB02g07490 Brassica carinata HOM05D002786 ORTHO05D003493 8.9e-13 80.5 642 22.1
CiPaw.01G108500 Carya illinoinensis HOM05D002786 ORTHO05D003493 1.2e-12 80.1 655 21.5
A07p24410 Brassica napus HOM05D002786 ORTHO05D003493 2.0e-12 79.3 642 22.9
BraA07t30088Z Brassica rapa HOM05D002786 ORTHO05D003493 2.0e-12 79.3 642 22.9
AL5G40900 Arabidopsis lyrata HOM05D002786 ORTHO05D003493 3.4e-12 78.6 642 22.4
A04p02290 Brassica napus HOM05D002786 ORTHO05D003493 5.8e-12 77.8 638 21.6
BraA04t15960Z Brassica rapa HOM05D002786 ORTHO05D003493 5.8e-12 77.8 638 21.6
BcaC02g10037 Brassica carinata HOM05D002786 ORTHO05D003493 2.9e-11 75.5 638 21.5
C04p33640 Brassica napus HOM05D002786 ORTHO05D003493 2.9e-11 75.5 638 21.5
Thhalv10005763m.g Eutrema salsugineum HOM05D002786 ORTHO05D003493 8.3e-11 73.9 635 21.6
MCO08G239 Micromonas commoda HOM05D002786 ORTHO05D003493 1.1e-10 73.6 670 19.9
Aa31LG10G13510 Aethionema arabicum HOM05D002786 ORTHO05D003493 4.1e-10 71.6 642 21.3
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 4.1e-10 71.6 48 66.7
BolC4t24933H Brassica oleracea HOM05D002786 ORTHO05D003493 2.1e-09 69.3 424 22.2
CDE09G0536 Ceratophyllum demersum HOM05D005298 ORTHO05D043882 4.6e-09 68.2 83 47.0
CDE07G0250 Ceratophyllum demersum HOM05D002786 ORTHO05D003493 1.0e-08 67.0 528 20.5
Zm00001eb383150 Zea mays HOM05D005298 ORTHO05D030733 1.9e-07 62.8 62 43.5
Zm00001eb082360 Zea mays HOM05D005298 ORTHO05D030733 4.3e-07 61.6 62 43.5
TPR.G21809 Trifolium pratense HOM05D005298 ORTHO05D037798 5.6e-07 61.2 62 50.0
TPR.G13833 Trifolium pratense HOM05D005298 ORTHO05D037798 7.3e-07 60.8 62 51.6


User provided reference genes

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