Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0117000 Salix brachista HOM05D001092 ORTHO05D000923 7.3e-74 280.4 136 100.0
Potri.008G100600 Populus trichocarpa HOM05D001092 ORTHO05D000923 1.0e-27 127.1 92 68.5
Sabra08G0076100 Salix brachista HOM05D001092 ORTHO05D000923 1.3e-27 126.7 92 68.5
QL06p013490 Quercus lobata HOM05D001092 ORTHO05D000923 5.3e-24 114.8 93 60.2
GSVIVG01017643001 Vitis vinifera HOM05D001092 ORTHO05D000923 2.6e-23 112.5 91 60.4
Haze_00822 Corylus avellana HOM05D001092 ORTHO05D000923 5.9e-23 111.3 94 60.6
Manes.03G209800 Manihot esculenta HOM05D001092 ORTHO05D000923 7.6e-23 110.9 92 60.9
MD16G1145600 Malus domestica HOM05D001092 ORTHO05D000923 1.0e-22 110.5 92 58.7
Prupe.1G110200 Prunus persica HOM05D001092 ORTHO05D000923 3.8e-22 108.6 103 52.4
Lj4g0014122 Lotus japonicus HOM05D001092 ORTHO05D000923 1.4e-21 106.7 87 57.5
MD13G1146800 Malus domestica HOM05D001092 ORTHO05D000923 1.4e-21 106.7 92 58.7
CSS0029198 Camellia sinensis var. sinensis HOM05D001092 ORTHO05D000923 2.5e-21 105.9 93 58.1
PGR004G1484 Punica granatum HOM05D001092 ORTHO05D000923 2.5e-21 105.9 92 54.3
Lalb_Chr13g0298791 Lupinus albus HOM05D001092 ORTHO05D000923 3.2e-21 105.5 83 60.2
TWI73G1237 Tripterygium wilfordii HOM05D001092 ORTHO05D000923 7.2e-21 104.4 92 53.3
CiPaw.01G132700 Carya illinoinensis HOM05D001092 ORTHO05D000923 9.4e-21 104.0 92 56.5
TPR.G12636 Trifolium pratense HOM05D001092 ORTHO05D000923 1.6e-20 103.2 83 59.0
FAN17G2279 Fragaria x ananassa HOM05D001092 ORTHO05D000923 2.7e-20 102.4 92 55.4
Cpa.g.sc146.62 Carica papaya HOM05D001092 ORTHO05D000923 4.6e-20 101.7 79 63.3
Ca_21396_v3 Cicer arietinum L. HOM05D001092 ORTHO05D000923 4.6e-20 101.7 83 57.8
Glyma.07G233100 Glycine max HOM05D001092 ORTHO05D000923 4.6e-20 101.7 84 57.1
MD16G1145300 Malus domestica HOM05D001092 ORTHO05D000923 4.6e-20 101.7 92 55.4
Sc03g0001750 Simmondsia chinensis HOM05D001092 ORTHO05D000923 4.6e-20 101.7 91 52.7
Ciclev10004114m.g Citrus clementina HOM05D001092 ORTHO05D000923 6.1e-20 101.3 89 53.9
AUR62003914 Chenopodium quinoa HOM05D001092 ORTHO05D000923 1.0e-19 100.5 83 54.2
Lalb_Chr12g0200731 Lupinus albus HOM05D001092 ORTHO05D000923 1.4e-19 100.1 83 57.8
Medtr4g123110 Medicago truncatula HOM05D001092 ORTHO05D000923 1.4e-19 100.1 83 57.8
RcHm_v2.0_Chr4g0426501 Rosa chinensis HOM05D001092 ORTHO05D000923 1.4e-19 100.1 92 55.4
arahy.Tifrunner.gnm1.ann1.NU1CTT Arachis hypogaea HOM05D001092 ORTHO05D000923 1.8e-19 99.8 77 58.4
Nn2g14503 Nelumbo nucifera HOM05D001092 ORTHO05D000923 1.8e-19 99.8 88 52.3
Aqoxy4G01581 Aquilegia oxysepala HOM05D001092 ORTHO05D000923 2.3e-19 99.4 77 61.0
Lj6C698G8 Lonicera japonica HOM05D001092 ORTHO05D000923 2.3e-19 99.4 79 62.0
Nn2g14500 Nelumbo nucifera HOM05D001092 ORTHO05D000923 2.3e-19 99.4 88 52.3
MELO3C006741.2 Cucumis melo HOM05D001092 ORTHO05D000923 6.7e-19 97.8 89 52.8
FvH4_4g20980 Fragaria vesca HOM05D001092 ORTHO05D000923 6.7e-19 97.8 92 53.3
FAN12G2952 Fragaria x ananassa HOM05D001092 ORTHO05D000923 6.7e-19 97.8 92 53.3
PSO761G0196 Papaver somniferum HOM05D001092 ORTHO05D000923 8.8e-19 97.4 95 50.5
AUR62038227 Chenopodium quinoa HOM05D001092 ORTHO05D000923 1.5e-18 96.7 83 51.8
vmacro07983 Vaccinium macrocarpon HOM05D001092 ORTHO05D000923 1.9e-18 96.3 75 58.7
Psat0s45g0040 Pisum sativum HOM05D001092 ORTHO05D000923 2.5e-18 95.9 76 59.2
Eucgr.H04089 Eucalyptus grandis HOM05D001092 ORTHO05D000923 3.3e-18 95.5 92 50.0
Atru.chr4.3076 Acer truncatum HOM05D001092 ORTHO05D000923 4.3e-18 95.1 88 52.3
Actinidia18490 Actinidia chinensis HOM05D001092 ORTHO05D000923 4.3e-18 95.1 75 61.3
COL.COLO4_34529 Corchorus olitorius HOM05D001092 ORTHO05D000923 5.7e-18 94.7 79 59.5
Solyc09g009370.4 Solanum lycopersicum HOM05D001092 ORTHO05D000923 7.4e-18 94.4 81 55.6
Gorai.005G069700 Gossypium raimondii HOM05D001092 ORTHO05D000923 1.3e-17 93.6 92 51.1
Gohir.A10G175801 Gossypium hirsutum HOM05D001092 ORTHO05D000923 1.7e-17 93.2 84 57.1
Gohir.A02G056800 Gossypium hirsutum HOM05D001092 ORTHO05D000923 2.2e-17 92.8 92 51.1
Gohir.D10G182400 Gossypium hirsutum HOM05D001092 ORTHO05D000923 2.2e-17 92.8 84 56.0
Gorai.011G204400 Gossypium raimondii HOM05D001092 ORTHO05D000923 2.2e-17 92.8 84 56.0
Sopen09g004100 Solanum pennellii HOM05D001092 ORTHO05D000923 2.2e-17 92.8 81 55.6
Thecc.04G308400 Theobroma cacao HOM05D001092 ORTHO05D000923 2.2e-17 92.8 84 53.6
Gohir.D02G062000 Gossypium hirsutum HOM05D001092 ORTHO05D000923 2.8e-17 92.4 92 50.0
CAN.G824.5 Capsicum annuum HOM05D001092 ORTHO05D000923 3.7e-17 92.0 73 58.9
SalBow8G5116 Salvia bowleyana HOM05D001092 ORTHO05D000923 8.2e-17 90.9 90 50.0
HanXRQChr10g0319861 Helianthus annuus HOM05D001092 ORTHO05D000923 1.8e-16 89.7 75 56.0
CsaV3_3G015400 Cucumis sativus L. HOM05D001092 ORTHO05D000923 2.4e-16 89.4 89 49.4
Phvul.003G119100 Phaseolus vulgaris HOM05D001092 ORTHO05D000923 2.4e-16 89.4 77 55.8
Sed0011983 Sechium edule HOM05D001092 ORTHO05D000923 2.4e-16 89.4 89 50.6
Migut.G00017 Erythranthe guttata HOM05D001092 ORTHO05D000923 5.3e-16 88.2 81 48.1
Nitab4.5_0001977g0050 Nicotiana tabacum HOM05D001092 ORTHO05D000923 9.1e-16 87.4 81 53.1
Nitab4.5_0009459g0020 Nicotiana tabacum HOM05D001092 ORTHO05D000923 9.1e-16 87.4 81 53.1
Rhsim04G0245300 Rhododendron simsii HOM05D001092 ORTHO05D000923 9.1e-16 87.4 74 56.8
ClCG05G006770 Citrullus lanatus HOM05D001092 ORTHO05D000923 1.2e-15 87.0 87 49.4
DCAR_023379 Daucus carota HOM05D001092 ORTHO05D000923 1.2e-15 87.0 83 48.2
DCAR_026963 Daucus carota HOM05D001092 ORTHO05D000923 1.2e-15 87.0 92 44.6
HanXRQChr01g0031031 Helianthus annuus HOM05D001092 ORTHO05D000923 7.7e-15 84.3 78 52.6
Cc03_g00400 Coffea canephora HOM05D001092 ORTHO05D000923 1.0e-14 84.0 77 51.9
SGA_v2.0_scaffold157G37366 Striga asiatica HOM05D001092 ORTHO05D000923 1.3e-14 83.6 83 45.8
SEGI_16723 Sequoiadendron giganteum HOM05D001092 ORTHO05D000923 2.9e-14 82.4 75 48.0
BcaB04g17465 Brassica carinata HOM05D001092 ORTHO05D000923 3.8e-14 82.0 93 48.4
THA.LOC104802610 Tarenaya hassleriana HOM05D001092 ORTHO05D000923 6.5e-14 81.3 88 48.9
Oeu033616.1 Olea europaea HOM05D001092 ORTHO05D000923 8.5e-14 80.9 75 50.7
Peaxi162Scf00290g00313 Petunia axillaris HOM05D001092 ORTHO05D000923 1.1e-13 80.5 81 48.1
CANSAT78G0281 Cannabis sativa HOM05D001092 ORTHO05D000923 1.9e-13 79.7 92 44.6
Sp1g35040 Schrenkiella parvula HOM05D001092 ORTHO05D000923 1.9e-13 79.7 91 49.5
A08p06860 Brassica napus HOM05D001092 ORTHO05D000923 2.5e-13 79.3 91 48.4
A06p04720 Brassica napus HOM05D001092 ORTHO05D000923 3.2e-13 79.0 91 48.4
BraA06t23675Z Brassica rapa HOM05D001092 ORTHO05D000923 3.2e-13 79.0 91 48.4
BcaC07g37172 Brassica carinata HOM05D001092 ORTHO05D000923 4.2e-13 78.6 91 48.4
A08p05240 Brassica napus HOM05D001092 ORTHO05D000923 4.2e-13 78.6 91 48.4
C08p05520 Brassica napus HOM05D001092 ORTHO05D000923 4.2e-13 78.6 91 48.4
BolC8t47372H Brassica oleracea HOM05D001092 ORTHO05D000923 4.2e-13 78.6 91 48.4
BraA08t32540Z Brassica rapa HOM05D001092 ORTHO05D000923 4.2e-13 78.6 91 48.4
C06p02470 Brassica napus HOM05D001092 ORTHO05D000923 5.5e-13 78.2 91 49.5
BolC6t35374H Brassica oleracea HOM05D001092 ORTHO05D000923 5.5e-13 78.2 91 49.5
HPP92_008100 Vanilla planifolia HOM05D001092 ORTHO05D000923 9.4e-13 77.4 88 43.2
Carub.0001s3719 Capsella rubella HOM05D001092 ORTHO05D000923 2.1e-12 76.3 93 47.3
CARHR037730 Cardamine hirsuta HOM05D001092 ORTHO05D000923 2.1e-12 76.3 93 46.2
AL1G54650 Arabidopsis lyrata HOM05D001092 ORTHO05D000923 3.6e-12 75.5 93 45.2
MSTRG.3839 Avicennia marina HOM05D001092 ORTHO05D000923 3.6e-12 75.5 83 47.0
Thhalv10011170m.g Eutrema salsugineum HOM05D001092 ORTHO05D000923 3.6e-12 75.5 91 45.1
Aa31LG10G5640 Aethionema arabicum HOM05D001092 ORTHO05D000923 4.7e-12 75.1 93 45.2
CDE02G0350 Ceratophyllum demersum HOM05D001092 ORTHO05D000923 4.7e-12 75.1 84 40.5
unitig_578.g15845 Utricularia gibba HOM05D001092 ORTHO05D000923 6.1e-12 74.7 81 46.9
SHI00081 Sapria himalayana HOM05D001092 ORTHO05D000923 3.9e-11 72.0 75 46.7
AT1G48090 Arabidopsis thaliana HOM05D001092 ORTHO05D000923 5.1e-11 71.6 93 43.0
Zm00001eb203090 Zea mays HOM05D001092 ORTHO05D000923 5.1e-11 71.6 87 40.2
Mapoly0076s0037 Marchantia polymorpha HOM05D001092 ORTHO05D000923 4.4e-10 68.6 93 38.7
unitig_82.g26964 Utricularia gibba HOM05D001092 ORTHO05D000923 4.4e-10 68.6 104 40.4
Lsat_1_v5_gn_1_40321 Lactuca sativa HOM05D001092 ORTHO05D000923 3.7e-09 65.5 77 41.6
BcaB07g33792 Brassica carinata HOM05D001092 ORTHO05D000923 8.2e-09 64.3 91 42.9


User provided reference genes

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