Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0040500 Salix brachista HOM05D008048 ORTHO05D010199 4.9e-160 567.8 289 100.0
Potri.010G067000 Populus trichocarpa HOM05D008048 ORTHO05D010199 5.4e-151 537.7 291 94.2
Potri.008G170900 Populus trichocarpa HOM05D008048 ORTHO05D010199 9.2e-143 510.4 291 89.3
Sabra08G0130700 Salix brachista HOM05D008048 ORTHO05D010199 1.7e-141 506.1 291 87.3
Manes.15G044600 Manihot esculenta HOM05D008048 ORTHO05D010199 2.2e-112 409.5 291 72.2
Cfa014771 Carpinus fangiana HOM05D008048 ORTHO05D010199 3.2e-95 352.4 291 63.9
Haze_11446 Corylus avellana HOM05D008048 ORTHO05D010199 9.3e-95 350.9 291 63.6
Sed0019169 Sechium edule HOM05D008048 ORTHO05D010199 7.4e-92 341.3 291 59.8
COL.COLO4_15948 Corchorus olitorius HOM05D008048 ORTHO05D010199 1.5e-89 333.6 291 59.8
MELO3C023035.2 Cucumis melo HOM05D008048 ORTHO05D010199 1.7e-88 330.1 291 58.1
Hma1.2p1_0385F.1_g141480 Hydrangea macrophylla HOM05D008048 ORTHO05D010199 2.2e-88 329.7 291 60.1
Prupe.1G046300 Prunus persica HOM05D008048 ORTHO05D010199 6.5e-88 328.2 291 60.8
Atru.chr4.1935 Acer truncatum HOM05D008048 ORTHO05D010199 3.2e-87 325.9 289 60.6
TAR362G0870 Trochodendron aralioides HOM05D008048 ORTHO05D010199 3.2e-87 325.9 291 57.0
QL06p020732 Quercus lobata HOM05D008048 ORTHO05D010199 5.5e-87 325.1 290 57.2
MD13G1219500 Malus domestica HOM05D008048 ORTHO05D010199 9.4e-87 324.3 289 57.8
CsaV3_2G012520 Cucumis sativus L. HOM05D008048 ORTHO05D010199 2.1e-86 323.2 291 57.4
Duzib151G0082 Durio zibethinus HOM05D008048 ORTHO05D010199 2.1e-86 323.2 291 60.5
RcHm_v2.0_Chr4g0394961 Rosa chinensis HOM05D008048 ORTHO05D010199 2.3e-85 319.7 295 59.3
Nn1g02915 Nelumbo nucifera HOM05D008048 ORTHO05D010199 8.8e-85 317.8 291 56.7
Lalb_Chr19g0128481 Lupinus albus HOM05D008048 ORTHO05D010199 4.3e-84 315.5 294 57.8
Ciclev10005562m.g Citrus clementina HOM05D008048 ORTHO05D010199 9.7e-84 314.3 291 57.4
Gorai.002G026300 Gossypium raimondii HOM05D008048 ORTHO05D010199 1.7e-83 313.5 292 56.8
Medtr1g045060 Medicago truncatula HOM05D008048 ORTHO05D010199 6.3e-83 311.6 291 55.0
Gohir.A01G025700 Gossypium hirsutum HOM05D008048 ORTHO05D010199 2.4e-82 309.7 292 56.2
TWI73G0695 Tripterygium wilfordii HOM05D008048 ORTHO05D010199 5.3e-82 308.5 298 57.7
Gohir.D01G023415 Gossypium hirsutum HOM05D008048 ORTHO05D010199 9.1e-82 307.8 292 56.5
Peaxi162Scf00033g00292 Petunia axillaris HOM05D008048 ORTHO05D010199 5.5e-79 298.5 289 53.3
TPR.G28751 Trifolium pratense HOM05D008048 ORTHO05D010199 5.5e-79 298.5 278 57.2
Psat6g106440 Pisum sativum HOM05D008048 ORTHO05D010199 7.2e-79 298.1 279 55.9
VMungo0720G0410 Vigna mungo HOM05D008048 ORTHO05D010199 1.2e-78 297.4 293 54.3
MD16G1225000 Malus domestica HOM05D008048 ORTHO05D010199 2.1e-78 296.6 287 55.1
MSTRG.4161 Avicennia marina HOM05D008048 ORTHO05D010199 2.7e-78 296.2 292 55.1
AUR62002183 Chenopodium quinoa HOM05D008048 ORTHO05D010199 4.7e-78 295.4 298 53.0
Lsat_1_v5_gn_6_68700 Lactuca sativa HOM05D008048 ORTHO05D010199 6.1e-78 295.0 293 53.6
FAN17G0666 Fragaria x ananassa HOM05D008048 ORTHO05D010199 1.4e-77 293.9 296 57.1
Aqoxy5G00167 Aquilegia oxysepala HOM05D008048 ORTHO05D010199 8.8e-77 291.2 293 53.2
PGSC0003DMG400017154 Solanum tuberosum HOM05D008048 ORTHO05D010199 8.8e-77 291.2 289 52.2
Dinv29814 Davidia involucrata HOM05D008048 ORTHO05D010199 1.1e-76 290.8 255 59.2
FvH4_4g04390 Fragaria vesca HOM05D008048 ORTHO05D010199 3.3e-76 289.3 278 57.6
Phvul.007G271100 Phaseolus vulgaris HOM05D008048 ORTHO05D010199 7.4e-76 288.1 293 54.6
Ah.04g155360 Amaranthus hybridus HOM05D008048 ORTHO05D010199 4.8e-75 285.4 291 51.9
Sc25g0003600 Simmondsia chinensis HOM05D008048 ORTHO05D010199 8.2e-75 284.6 292 52.7
CAN.G220.87 Capsicum annuum HOM05D008048 ORTHO05D010199 1.1e-74 284.3 289 50.9
FAN22G2321 Fragaria x ananassa HOM05D008048 ORTHO05D010199 1.8e-74 283.5 296 55.7
Sopen09g033500 Solanum pennellii HOM05D008048 ORTHO05D010199 1.5e-73 280.4 289 49.8
Migut.G00487 Erythranthe guttata HOM05D008048 ORTHO05D010199 2.6e-73 279.6 292 53.4
PGR004G1266 Punica granatum HOM05D008048 ORTHO05D010199 1.0e-72 277.7 296 54.4
MBI07_g18713_MAGBIO Magnolia biondii HOM05D008048 ORTHO05D010199 6.5e-72 275.0 291 52.6
Actinidia20832 Actinidia chinensis HOM05D008048 ORTHO05D010199 8.5e-72 274.6 264 56.4
Lj6g0004811 Lotus japonicus HOM05D008048 ORTHO05D010199 1.4e-69 267.3 292 51.0
Thecc.04G262100 Theobroma cacao HOM05D008048 ORTHO05D010199 1.5e-68 263.8 226 60.2
Nitab4.5_0002709g0050 Nicotiana tabacum HOM05D008048 ORTHO05D010199 2.8e-67 259.6 401 40.1
SalBow3G4414 Salvia bowleyana HOM05D008048 ORTHO05D010199 6.3e-67 258.5 292 50.3
Rhsim04G0173500 Rhododendron simsii HOM05D008048 ORTHO05D010199 8.2e-67 258.1 244 55.7
CiPaw.02G108000 Carya illinoinensis HOM05D008048 ORTHO05D010199 3.2e-63 246.1 291 52.2
Glyma.20G086000 Glycine max HOM05D008048 ORTHO05D010199 7.2e-63 245.0 269 51.7
SGA_v2.0_scaffold67G22704 Striga asiatica HOM05D008048 ORTHO05D010199 2.4e-58 229.9 226 53.5
Oeu002289.1 Olea europaea HOM05D008048 ORTHO05D010199 2.7e-57 226.5 292 45.5
Cpa.g.sc44.13 Carica papaya HOM05D008048 ORTHO05D010199 2.1e-46 190.3 191 49.2
Lj6P622T54 Lonicera japonica HOM05D008048 ORTHO05D010199 4.0e-45 186.0 158 61.4
GSVIVG01027901001 Vitis vinifera HOM05D008048 ORTHO05D010199 8.6e-40 168.3 165 53.3
DCAR_027338 Daucus carota HOM05D008048 ORTHO05D010199 1.9e-39 167.2 188 46.8
ATR0736G121 Amborella trichopoda HOM05D008048 ORTHO05D010199 2.3e-37 160.2 169 52.7
CAN.G220.88 Capsicum annuum HOM05D008048 ORTHO05D010199 8.9e-37 158.3 172 48.8
FAN12G0723 Fragaria x ananassa HOM05D008048 ORTHO05D010199 1.4e-34 151.0 151 55.6
FAN12G2845 Fragaria x ananassa HOM05D008048 ORTHO05D010199 1.4e-34 151.0 151 55.6
Solyc09g090560.2 Solanum lycopersicum HOM05D008048 ORTHO05D010199 5.6e-31 139.0 152 49.3
EL10Ac3g04955 Beta vulgaris HOM05D008048 ORTHO05D010199 2.6e-28 130.2 112 58.0
FAN12G1007 Fragaria x ananassa HOM05D008048 ORTHO05D010199 5.8e-28 129.0 89 73.0
FAN12G3146 Fragaria x ananassa HOM05D008048 ORTHO05D010199 5.8e-28 129.0 89 73.0
Ca_11923_v3 Cicer arietinum L. HOM05D008048 ORTHO05D010199 2.3e-24 117.1 100 57.0
Gohir.A11G062100 Gossypium hirsutum HOM05D007245 ORTHO05D009049 1.2e-22 111.3 284 29.6
Thecc.04G050800 Theobroma cacao HOM05D007245 ORTHO05D009049 1.6e-22 110.9 274 30.3
Gorai.007G071400 Gossypium raimondii HOM05D007245 ORTHO05D009049 2.8e-22 110.2 274 29.6
Gohir.D11G065900 Gossypium hirsutum HOM05D007245 ORTHO05D009049 6.2e-22 109.0 274 29.6
Manes.11G073800 Manihot esculenta HOM05D007245 ORTHO05D009049 1.1e-21 108.2 272 29.4
CAN.G1489.19 Capsicum annuum HOM05D007245 ORTHO05D009049 3.1e-21 106.7 273 26.4
Hma1.2p1_0421F.1_g149920 Hydrangea macrophylla HOM05D007245 ORTHO05D009049 3.1e-21 106.7 272 31.2
SEGI_38415 Sequoiadendron giganteum HOM05D007245 ORTHO05D009049 4.0e-21 106.3 274 28.8
Haze_14957 Corylus avellana HOM05D007245 ORTHO05D009049 1.5e-20 104.4 281 29.2
Duzib187G0347 Durio zibethinus HOM05D007245 ORTHO05D009049 1.5e-20 104.4 273 30.8
Nn3g16217 Nelumbo nucifera HOM05D007245 ORTHO05D009049 2.6e-20 103.6 302 27.8
Duzib147G1224 Durio zibethinus HOM05D007245 ORTHO05D009049 5.8e-20 102.4 274 29.6
Pp3c8_3270 Physcomitrium patens HOM05D007245 ORTHO05D009049 9.9e-20 101.7 288 28.1
PGSC0003DMG400030518 Solanum tuberosum HOM05D007245 ORTHO05D009049 1.7e-19 100.9 274 27.0
Dinv33262 Davidia involucrata HOM05D007245 ORTHO05D009049 2.2e-19 100.5 274 29.2
CARHR199540 Cardamine hirsuta HOM05D007245 ORTHO05D009049 2.9e-19 100.1 285 27.0
CiPaw.03G000500 Carya illinoinensis HOM05D007245 ORTHO05D009049 4.9e-19 99.4 248 31.9
Dinv25610 Davidia involucrata HOM05D007245 ORTHO05D009049 6.4e-19 99.0 274 31.0
TAR629G1424 Trochodendron aralioides HOM05D007245 ORTHO05D009049 8.3e-19 98.6 274 28.8
Sopen05g004430 Solanum pennellii HOM05D007245 ORTHO05D009049 1.9e-18 97.4 253 27.7
AT5G13890 Arabidopsis thaliana HOM05D007245 ORTHO05D009049 2.4e-18 97.1 267 27.0
Carub.0006s1208 Capsella rubella HOM05D007245 ORTHO05D009049 4.1e-18 96.3 266 27.1
MBI11_g03703_MAGBIO Magnolia biondii HOM05D007245 ORTHO05D009049 5.4e-18 95.9 273 29.7
SGA_v2.0_scaffold47G17641 Striga asiatica HOM05D007245 ORTHO05D009049 5.4e-18 95.9 279 28.7
AL6G24530 Arabidopsis lyrata HOM05D007245 ORTHO05D009049 7.1e-18 95.5 275 26.2
TAR374G0050 Trochodendron aralioides HOM05D000179 ORTHO05D009049 7.1e-18 95.5 248 30.6
Thhalv10014197m.g Eutrema salsugineum HOM05D007245 ORTHO05D009049 1.2e-17 94.7 278 26.6
Oeu050155.1 Olea europaea HOM05D007245 ORTHO05D009049 2.1e-17 94.0 271 28.0
MSTRG.15573 Avicennia marina HOM05D007245 ORTHO05D009049 2.7e-17 93.6 273 26.7
BcaC04g19069 Brassica carinata HOM05D007245 ORTHO05D009049 2.7e-17 93.6 278 28.4
Cc09_g07550 Coffea canephora HOM05D007245 ORTHO05D009049 2.7e-17 93.6 262 32.1
Glyma.19G106200 Glycine max HOM05D007245 ORTHO05D009049 2.7e-17 93.6 264 28.8
Sp6g30110 Schrenkiella parvula HOM05D007245 ORTHO05D009049 2.7e-17 93.6 277 26.4
C09p63210 Brassica napus HOM05D007245 ORTHO05D009049 3.5e-17 93.2 278 27.3
BolC9t59157H Brassica oleracea HOM05D007245 ORTHO05D009049 3.5e-17 93.2 278 27.3
Sed0008898 Sechium edule HOM05D007245 ORTHO05D009049 3.5e-17 93.2 266 26.7
BraA10t44512Z Brassica rapa HOM05D007245 ORTHO05D009049 6.0e-17 92.4 281 26.3
SalBow7G3959 Salvia bowleyana HOM05D007245 ORTHO05D009049 6.0e-17 92.4 280 28.9
THA.LOC104822428 Tarenaya hassleriana HOM05D007245 ORTHO05D009049 6.0e-17 92.4 278 28.1
BcaC04g24245 Brassica carinata HOM05D007245 ORTHO05D009049 7.8e-17 92.0 281 28.5
A10p24470 Brassica napus HOM05D007245 ORTHO05D009049 7.8e-17 92.0 281 26.3
Cpa.g.sc70.41 Carica papaya HOM05D007245 ORTHO05D009049 1.0e-16 91.7 264 28.8
PSO478G0086 Papaver somniferum HOM05D007245 ORTHO05D009049 1.3e-16 91.3 297 29.6
QL02p068579 Quercus lobata HOM05D007245 ORTHO05D009049 1.3e-16 91.3 266 27.8
SHI23073 Sapria himalayana HOM05D000105 ORTHO05D000023 1.3e-16 91.3 288 27.4
Atru.chr6.2722 Acer truncatum HOM05D007245 ORTHO05D009049 1.7e-16 90.9 272 27.2
CSS0002235 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 1.7e-16 90.9 278 27.0
CSS0018621 Camellia sinensis var. sinensis HOM05D007245 ORTHO05D009049 1.7e-16 90.9 282 26.6
PSO017G6414 Papaver somniferum HOM05D007245 ORTHO05D009049 1.7e-16 90.9 299 28.8
Sed0013025 Sechium edule HOM05D007245 ORTHO05D009049 3.0e-16 90.1 278 25.9
Lalb_Chr24g0402921 Lupinus albus HOM05D007245 ORTHO05D009049 8.6e-16 88.6 272 27.2
Aa31LG11G15470 Aethionema arabicum HOM05D007245 ORTHO05D009049 1.1e-15 88.2 265 29.1
Potri.002G237200 Populus trichocarpa HOM05D007245 ORTHO05D009049 1.5e-15 87.8 266 27.4
HanXRQChr09g0245251 Helianthus annuus HOM05D007245 ORTHO05D009049 3.3e-15 86.7 259 27.0
RcHm_v2.0_Chr2g0176701 Rosa chinensis HOM05D007245 ORTHO05D009049 4.3e-15 86.3 279 26.5
ATR0582G351 Amborella trichopoda HOM05D007245 ORTHO05D009049 7.3e-15 85.5 269 27.5
Lj7P619T29 Lonicera japonica HOM05D007245 ORTHO05D009049 9.6e-15 85.1 295 23.7
MD17G1004200 Malus domestica HOM05D007245 ORTHO05D009049 1.2e-14 84.7 285 26.3
PGR142G1730 Punica granatum HOM05D007245 ORTHO05D009049 1.2e-14 84.7 292 27.4
Nitab4.5_0005411g0120 Nicotiana tabacum HOM05D007245 ORTHO05D009049 1.6e-14 84.3 256 27.0
FvH4_6g31080 Fragaria vesca HOM05D007245 ORTHO05D009049 2.1e-14 84.0 281 24.9
MELO3C014761.2 Cucumis melo HOM05D007245 ORTHO05D009049 2.8e-14 83.6 286 24.5
FAN05G2831 Fragaria x ananassa HOM05D007245 ORTHO05D009049 2.8e-14 83.6 282 24.8
Actinidia37711 Actinidia chinensis HOM05D007245 ORTHO05D009049 3.6e-14 83.2 252 30.2
Ciclev10016068m.g Citrus clementina HOM05D007245 ORTHO05D009049 3.6e-14 83.2 259 27.8
CsaV3_3G020030 Cucumis sativus L. HOM05D007245 ORTHO05D009049 3.6e-14 83.2 286 24.5
Migut.K01486 Erythranthe guttata HOM05D007245 ORTHO05D009049 3.6e-14 83.2 252 27.8
Ah.03g136550 Amaranthus hybridus HOM05D001378 ORTHO05D001249 6.2e-14 82.4 253 28.5
CANSAT64G0979 Cannabis sativa HOM05D007245 ORTHO05D009049 6.2e-14 82.4 279 25.8
Lsat_1_v5_gn_2_60460 Lactuca sativa HOM05D007245 ORTHO05D009049 8.1e-14 82.0 262 25.6
Oeu045577.1 Olea europaea HOM05D007245 ORTHO05D009049 8.1e-14 82.0 277 26.0
Prupe.7G011800 Prunus persica HOM05D007245 ORTHO05D009049 8.1e-14 82.0 283 26.5
ClCG05G012490 Citrullus lanatus HOM05D007245 ORTHO05D009049 1.4e-13 81.3 286 23.8
Peaxi162Scf00950g00032 Petunia axillaris HOM05D007245 ORTHO05D009049 1.4e-13 81.3 264 27.7
unitig_0.g2407 Utricularia gibba HOM05D007245 ORTHO05D009049 1.4e-13 81.3 229 28.4
Nitab4.5_0005095g0010 Nicotiana tabacum HOM05D007245 ORTHO05D009049 2.4e-13 80.5 239 27.2
MD09G1001100 Malus domestica HOM05D007245 ORTHO05D009049 5.2e-13 79.3 284 25.7
ECA238G1127 Erigeron canadensis HOM05D007245 ORTHO05D009049 6.8e-13 79.0 250 26.8
SMO329G0038 Selaginella moellendorffii HOM05D007245 ORTHO05D009049 6.8e-13 79.0 258 25.6
Aqoxy2G01225 Aquilegia oxysepala HOM05D007245 ORTHO05D009049 1.2e-12 78.2 281 22.8
DCAR_000961 Daucus carota HOM05D007245 ORTHO05D009049 2.0e-12 77.4 271 27.7
Pp3c4_3800 Physcomitrium patens HOM05D007245 ORTHO05D009049 3.4e-12 76.6 185 28.6
vmacro18400 Vaccinium macrocarpon HOM05D007245 ORTHO05D009049 5.8e-12 75.9 279 25.4
AagrBONN_evm.TU.Sc2ySwM_369.440 Anthoceros agrestis HOM05D007245 ORTHO05D009049 7.6e-12 75.5 284 27.1
RcHm_v2.0_Chr2g0137761 Rosa chinensis HOM05D007245 ORTHO05D009049 7.6e-12 75.5 281 25.3
SGA_v2.0_scaffold34G13684 Striga asiatica HOM05D007245 ORTHO05D009049 7.6e-12 75.5 294 26.5
COL.COLO4_13398 Corchorus olitorius HOM05D005263 ORTHO05D006891 9.9e-12 75.1 119 36.1
Phvul.001G099200 Phaseolus vulgaris HOM05D007245 ORTHO05D009049 9.9e-12 75.1 270 27.4
Sc03g0005330 Simmondsia chinensis HOM05D007245 ORTHO05D009049 1.3e-11 74.7 264 25.4
CDE06G2711 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 1.7e-11 74.3 292 27.7
Sabra02G0180800 Salix brachista HOM05D007245 ORTHO05D009049 1.7e-11 74.3 258 24.8
TAR365G0106 Trochodendron aralioides HOM05D008048 ORTHO05D010199 2.2e-11 73.9 110 36.4
TWI32G1326 Tripterygium wilfordii HOM05D007245 ORTHO05D009049 2.9e-11 73.6 277 24.9
Lj1g0022763 Lotus japonicus HOM05D007245 ORTHO05D009049 8.4e-11 72.0 264 26.1
TPR.G31664 Trifolium pratense HOM05D007245 ORTHO05D009049 3.2e-10 70.1 268 25.4
Medtr7g084610 Medicago truncatula HOM05D007245 ORTHO05D009049 7.1e-10 68.9 250 28.4
Rhsim08G0037800 Rhododendron simsii HOM05D007245 ORTHO05D009049 1.2e-09 68.2 277 27.8
Psat3g091920 Pisum sativum HOM05D007245 ORTHO05D009049 4.6e-09 66.2 123 32.5
VMungo1383G3535 Vigna mungo HOM05D007245 ORTHO05D009049 4.6e-09 66.2 270 26.7
Manes.04G095000 Manihot esculenta HOM05D007245 ORTHO05D009049 6.0e-09 65.9 274 25.2
CDE02G4767 Ceratophyllum demersum HOM05D007245 ORTHO05D009049 1.7e-08 64.3 287 25.1
Ca_08230_v3 Cicer arietinum L. HOM05D007245 ORTHO05D009049 2.3e-08 63.9 110 31.8


User provided reference genes

Program Settings