Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 0.0e+00 1294.6 690 100.0
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 0.0e+00 1116.7 688 88.1
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 5.5e-295 1017.3 691 80.8
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 2.4e-237 825.9 698 67.0
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 2.5e-231 805.8 693 65.7
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 5.6e-231 804.7 695 64.9
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 2.4e-229 799.3 695 64.6
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 2.6e-228 795.8 692 64.5
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 3.5e-225 785.4 693 64.6
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 1.8e-224 783.1 692 64.7
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 1.8e-224 783.1 692 64.2
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 2.5e-223 779.2 692 64.3
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 7.4e-223 777.7 678 63.3
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 3.7e-222 775.4 693 62.6
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.4e-221 773.5 720 62.2
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 4.0e-221 771.9 698 64.2
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 6.9e-221 771.2 720 61.9
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.5e-220 770.0 720 61.9
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 2.6e-220 769.2 696 62.4
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 3.4e-220 768.8 688 63.2
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 3.8e-219 765.4 694 62.5
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 1.6e-217 760.0 686 63.1
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 2.7e-217 759.2 691 61.4
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 3.0e-216 755.7 675 61.8
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 8.7e-216 754.2 689 60.8
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 3.3e-215 752.3 690 60.9
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 4.3e-215 751.9 689 61.1
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 4.3e-215 751.9 699 61.1
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 5.7e-215 751.5 692 62.1
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 5.7e-215 751.5 704 61.5
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 2.2e-214 749.6 690 60.7
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 2.2e-214 749.6 690 60.7
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 9.0e-213 744.2 692 60.7
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 1.2e-212 743.8 683 60.6
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 2.0e-212 743.0 690 60.3
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 4.5e-212 741.9 696 60.9
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 5.9e-212 741.5 622 64.1
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 1.7e-211 740.0 696 60.9
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 5.0e-211 738.4 700 59.4
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 7.2e-210 734.6 698 61.9
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 9.4e-210 734.2 699 59.4
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 3.6e-209 732.3 699 58.4
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 4.6e-209 731.9 698 61.5
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 7.4e-207 724.5 697 58.8
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 2.8e-206 722.6 720 57.8
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 2.8e-206 722.6 718 57.8
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 8.2e-206 721.1 701 59.9
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 5.3e-205 718.4 718 57.7
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 1.2e-204 717.2 610 63.1
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 3.4e-204 715.7 725 56.6
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 1.3e-203 713.8 689 58.8
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 2.9e-203 712.6 685 59.1
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 1.9e-202 709.9 697 59.0
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 2.5e-202 709.5 686 58.5
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 6.1e-201 704.9 682 57.8
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 6.1e-201 704.9 698 60.5
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 1.0e-200 704.1 607 61.0
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 3.0e-200 702.6 659 58.4
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 8.8e-200 701.0 691 57.2
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 1.5e-199 700.3 694 58.4
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 1.7e-198 696.8 683 57.8
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 1.7e-198 696.8 677 57.5
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 1.4e-197 693.7 684 58.5
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 1.8e-197 693.3 684 58.5
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 2.4e-197 693.0 697 56.4
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 4.1e-197 692.2 684 56.9
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 5.3e-197 691.8 693 56.9
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 1.2e-196 690.6 684 56.7
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 4.5e-196 688.7 684 56.7
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 2.2e-195 686.4 685 58.2
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 3.8e-195 685.6 685 56.8
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 9.4e-194 681.0 630 60.6
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 1.6e-193 680.2 681 56.5
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 1.4e-192 677.2 677 56.4
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 5.2e-192 675.2 679 58.5
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 1.1e-191 674.1 685 55.9
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 2.0e-191 673.3 698 57.3
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 7.4e-191 671.4 679 56.0
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 2.6e-188 662.9 705 54.6
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 1.3e-187 660.6 692 54.5
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 2.9e-187 659.4 688 54.5
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 6.5e-187 658.3 679 56.1
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 2.3e-184 649.8 686 55.1
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 4.0e-184 649.0 677 55.7
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.6e-183 646.4 690 55.9
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 9.7e-183 644.4 648 58.3
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 2.7e-180 636.3 578 59.2
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 9.4e-178 627.9 712 53.9
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 1.0e-176 624.4 665 54.7
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 3.7e-174 615.9 688 54.4
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 1.1e-173 614.4 651 57.3
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 7.0e-173 611.7 641 58.8
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 4.5e-172 609.0 544 60.1
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 1.3e-171 607.4 699 52.5
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 5.0e-171 605.5 699 52.2
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 2.3e-168 596.7 678 51.6
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 3.0e-168 596.3 695 51.9
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 4.0e-168 595.9 688 52.5
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 7.5e-167 591.7 697 53.4
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 8.1e-153 545.0 649 47.6
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.3e-142 511.1 474 61.4
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 1.9e-130 470.7 624 47.1
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 3.3e-130 469.9 610 44.1
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 8.1e-129 465.3 658 43.8
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 4.9e-118 429.5 633 42.0
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 4.2e-117 426.4 362 64.4
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 4.6e-116 422.9 711 38.4
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 2.5e-109 400.6 427 56.9
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 1.8e-96 357.8 706 38.4
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 2.6e-95 354.0 676 34.6
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 1.0e-91 342.0 387 51.7
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 1.5e-90 338.2 580 40.7
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 7.7e-87 325.9 284 61.6
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.1e-85 322.0 458 45.9
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.4e-85 321.6 348 51.1
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 4.1e-80 303.5 311 56.3
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 6.7e-75 286.2 312 50.0
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 3.0e-59 234.2 665 27.5
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 1.5e-58 231.9 720 26.4
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.5e-50 205.3 149 67.1
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 9.8e-50 202.6 207 59.9
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 1.6e-47 195.3 256 46.1
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 2.0e-47 194.9 266 45.1
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 4.6e-39 167.2 253 41.9
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 7.8e-39 166.4 253 41.9
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 3.0e-38 164.5 673 25.0
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 1.3e-33 149.1 177 48.6
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 1.9e-32 145.2 114 62.3
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 1.1e-29 136.0 95 69.5
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 1.5e-29 135.6 130 52.3
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 3.3e-29 134.4 99 65.7
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 3.3e-29 134.4 153 53.6
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 1.1e-27 129.4 154 46.8
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 6.6e-22 110.2 167 48.5
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 2.8e-20 104.8 221 36.2
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 8.1e-20 103.2 80 61.2
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 4.2e-16 90.9 81 59.3
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 9.3e-16 89.7 77 64.9
HPP92_010686 Vanilla planifolia HOM05D004772 ORTHO05D006892 6.0e-15 87.0 100 49.0
BcaC04g21315 Brassica carinata HOM05D004772 ORTHO05D006892 3.0e-14 84.7 173 38.2
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 4.3e-13 80.9 104 50.0
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 1.6e-12 79.0 142 37.3
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 1.6e-12 79.0 142 37.3
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 1.6e-12 79.0 142 37.3
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 2.1e-12 78.6 120 42.5
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 3.6e-12 77.8 142 36.6
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 3.6e-12 77.8 142 36.6
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 4.8e-12 77.4 142 36.6
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 9.0e-11 73.2 108 44.4
A09p56420 Brassica napus HOM05D004772 ORTHO05D042523 1.4e-08 65.9 54 50.0
BraA09t41036Z Brassica rapa HOM05D004772 ORTHO05D042523 1.4e-08 65.9 54 50.0
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 2.1e-07 62.0 45 55.6


User provided reference genes

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