Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0106500 Salix brachista HOM05D005442 ORTHO05D006450 5.2e-304 1047.0 545 100.0
Potri.009G137000 Populus trichocarpa HOM05D005442 ORTHO05D006450 7.3e-149 531.6 348 83.3
Ciclev10028168m.g Citrus clementina HOM05D005442 ORTHO05D006450 1.7e-97 360.9 569 43.9
GSVIVG01023996001 Vitis vinifera HOM05D005442 ORTHO05D006450 9.0e-91 338.6 554 42.6
Dinv41924 Davidia involucrata HOM05D005442 ORTHO05D006450 2.6e-90 337.0 581 43.4
Sed0001500 Sechium edule HOM05D005442 ORTHO05D006450 2.1e-87 327.4 559 43.1
Manes.01G140900 Manihot esculenta HOM05D005442 ORTHO05D006450 1.1e-85 321.6 559 42.4
TWI31G1375 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 1.5e-85 321.2 553 41.4
CiPaw.05G084400 Carya illinoinensis HOM05D005442 ORTHO05D006450 2.4e-83 313.9 598 40.0
Thecc.02G056900 Theobroma cacao HOM05D005442 ORTHO05D006450 3.1e-83 313.5 582 39.9
QL11p051413 Quercus lobata HOM05D005442 ORTHO05D006450 4.5e-82 309.7 608 39.8
CSS0044298 Camellia sinensis var. sinensis HOM05D005442 ORTHO05D006450 2.1e-79 300.8 571 41.0
TAR376G0424 Trochodendron aralioides HOM05D005442 ORTHO05D006450 3.9e-78 296.6 633 38.2
Actinidia39159 Actinidia chinensis HOM05D005442 ORTHO05D006450 1.1e-77 295.0 599 37.6
TAR369G0572 Trochodendron aralioides HOM05D005442 ORTHO05D006450 2.8e-76 290.4 635 38.0
Haze_13370 Corylus avellana HOM05D005442 ORTHO05D006450 6.3e-76 289.3 479 42.6
ClCG02G012030 Citrullus lanatus HOM05D005442 ORTHO05D006450 5.5e-72 276.2 556 38.5
Actinidia21468 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.9e-70 270.0 605 37.0
Atru.chr5.3384 Acer truncatum HOM05D005442 ORTHO05D006450 1.7e-68 264.6 284 53.5
Cpa.g.sc20.103 Carica papaya HOM05D005442 ORTHO05D006450 6.3e-68 262.7 529 38.6
Eucgr.I01451 Eucalyptus grandis HOM05D005442 ORTHO05D006450 2.4e-67 260.8 495 37.8
Gorai.005G254900 Gossypium raimondii HOM05D005442 ORTHO05D006450 3.1e-67 260.4 434 41.7
Gohir.A03G205700 Gossypium hirsutum HOM05D005442 ORTHO05D006450 1.2e-66 258.5 434 41.7
MD05G1123900 Malus domestica HOM05D005442 ORTHO05D006450 2.6e-66 257.3 575 37.6
vmacro17319 Vaccinium macrocarpon HOM05D005442 ORTHO05D006450 2.6e-66 257.3 549 38.8
Gohir.D02G227000 Gossypium hirsutum HOM05D005442 ORTHO05D006450 7.7e-66 255.8 434 41.5
MELO3C020828.2 Cucumis melo HOM05D005442 ORTHO05D006450 1.3e-65 255.0 617 34.8
CsaV3_2G016200 Cucumis sativus L. HOM05D005442 ORTHO05D006450 2.9e-65 253.8 624 34.3
COL.COLO4_17367 Corchorus olitorius HOM05D005442 ORTHO05D006450 3.6e-63 246.9 611 35.4
Actinidia32035 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.0e-62 243.8 565 36.6
Nn1g06499 Nelumbo nucifera HOM05D005442 ORTHO05D006450 6.7e-62 242.7 536 38.1
Peaxi162Scf00362g00530 Petunia axillaris HOM05D005442 ORTHO05D006450 7.5e-61 239.2 579 37.0
Duzib132G0277 Durio zibethinus HOM05D005442 ORTHO05D006450 2.2e-60 237.7 456 38.4
Sc08g0002780 Simmondsia chinensis HOM05D005442 ORTHO05D006450 2.2e-60 237.7 570 36.8
MSTRG.16924 Avicennia marina HOM05D005442 ORTHO05D006450 2.8e-60 237.3 562 36.3
PGR142G2067 Punica granatum HOM05D005442 ORTHO05D006450 7.0e-59 232.6 514 37.0
Solyc01g111720.4 Solanum lycopersicum HOM05D005442 ORTHO05D006450 2.7e-58 230.7 579 35.2
Sopen01g053760 Solanum pennellii HOM05D005442 ORTHO05D006450 2.7e-58 230.7 579 35.2
PGSC0003DMG400006166 Solanum tuberosum HOM05D005442 ORTHO05D006450 1.0e-57 228.8 579 34.9
Lsat_1_v5_gn_6_13820 Lactuca sativa HOM05D005442 ORTHO05D006450 2.2e-57 227.6 413 40.4
EL10Ac9g21351 Beta vulgaris HOM05D005442 ORTHO05D006450 2.5e-56 224.2 604 34.4
CANSAT56G0103 Cannabis sativa HOM05D005442 ORTHO05D006450 4.2e-56 223.4 332 43.7
Hund06446 Selenicereus undatus HOM05D005442 ORTHO05D006450 2.7e-55 220.7 427 39.8
Lalb_Chr06g0163701 Lupinus albus HOM05D005442 ORTHO05D006450 4.7e-55 219.9 417 38.4
Cc09_g09800 Coffea canephora HOM05D005442 ORTHO05D006450 8.0e-55 219.2 559 35.8
MBI11_g07617_MAGBIO Magnolia biondii HOM05D005442 ORTHO05D006450 1.0e-54 218.8 652 33.1
Lj5g0013939 Lotus japonicus HOM05D005442 ORTHO05D006450 1.8e-54 218.0 440 37.0
Glyma.20G106900 Glycine max HOM05D005442 ORTHO05D006450 6.8e-54 216.1 514 36.4
Ca_03302_v3 Cicer arietinum L. HOM05D005442 ORTHO05D006450 3.4e-53 213.8 427 37.2
THA.LOC104807379 Tarenaya hassleriana HOM05D005442 ORTHO05D006450 3.4e-53 213.8 406 37.4
Aa31LG8G14120 Aethionema arabicum HOM05D005442 ORTHO05D006450 4.4e-53 213.4 443 36.8
CDE04G0468 Ceratophyllum demersum HOM05D005442 ORTHO05D000996 5.7e-53 213.0 238 52.9
CDE02G3112 Ceratophyllum demersum HOM05D005442 ORTHO05D006450 1.7e-52 211.5 251 49.8
PSO541G1416 Papaver somniferum HOM05D005442 ORTHO05D006450 2.2e-52 211.1 545 34.1
Prupe.8G167900 Prunus persica HOM05D005442 ORTHO05D006450 4.8e-52 209.9 543 35.2
DCAR_011887 Daucus carota HOM05D005442 ORTHO05D006450 8.3e-52 209.1 315 41.6
PSO675G1865 Papaver somniferum HOM05D005442 ORTHO05D006450 1.1e-51 208.8 546 33.7
Glyma.10G282700 Glycine max HOM05D005442 ORTHO05D006450 4.1e-51 206.8 519 36.2
ATR0763G134 Amborella trichopoda HOM05D005442 ORTHO05D006450 1.6e-50 204.9 318 44.7
AUR62010020 Chenopodium quinoa HOM05D005442 ORTHO05D006450 5.9e-50 203.0 343 40.8
ECA233G3196 Erigeron canadensis HOM05D005442 ORTHO05D006450 1.0e-49 202.2 464 36.9
Sp3g30220 Schrenkiella parvula HOM05D005442 ORTHO05D006450 1.3e-49 201.8 294 41.8
Thhalv10022629m.g Eutrema salsugineum HOM05D005442 ORTHO05D006450 3.8e-49 200.3 320 40.9
unitig_744.g24278 Utricularia gibba HOM05D005442 ORTHO05D006450 1.1e-48 198.7 298 42.6
Phvul.007G018400 Phaseolus vulgaris HOM05D005442 ORTHO05D006450 4.2e-48 196.8 519 34.5
arahy.Tifrunner.gnm1.ann1.WUXL4S Arachis hypogaea HOM05D005442 ORTHO05D006450 7.2e-48 196.1 450 34.2
BcaC06g36199 Brassica carinata HOM05D005442 ORTHO05D006450 9.5e-48 195.7 322 39.4
BolC7t41079H Brassica oleracea HOM05D005442 ORTHO05D006450 9.5e-48 195.7 322 39.4
BcaB03g16428 Brassica carinata HOM05D005442 ORTHO05D006450 2.1e-47 194.5 320 39.4
arahy.Tifrunner.gnm1.ann1.ZGQ44R Arachis hypogaea HOM05D005442 ORTHO05D006450 2.8e-47 194.1 451 33.9
C07p06570 Brassica napus HOM05D005442 ORTHO05D006450 2.8e-47 194.1 322 39.1
A07p04140 Brassica napus HOM05D005442 ORTHO05D006450 3.6e-47 193.7 322 39.1
BraA07t28205Z Brassica rapa HOM05D005442 ORTHO05D006450 4.7e-47 193.4 322 39.1
Psat6g232320 Pisum sativum HOM05D005442 ORTHO05D006450 1.4e-46 191.8 454 35.2
Medtr1g112820 Medicago truncatula HOM05D005442 ORTHO05D002291 4.0e-46 190.3 280 42.1
AT1G34360 Arabidopsis thaliana HOM05D005442 ORTHO05D006450 7.5e-45 186.0 433 34.6
FAN15G0807 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.3e-44 185.3 293 43.7
AL1G48920 Arabidopsis lyrata HOM05D005442 ORTHO05D006450 1.7e-44 184.9 433 35.1
SGA_v2.0_scaffold58G20356 Striga asiatica HOM05D002097 ORTHO05D002248 1.7e-44 184.9 461 35.8
FvH4_2g15550 Fragaria vesca HOM05D005442 ORTHO05D006450 4.9e-44 183.3 293 43.3
Carub.0001s3251 Capsella rubella HOM05D005442 ORTHO05D006450 6.3e-44 183.0 395 36.2
Migut.B00066 Erythranthe guttata HOM05D005442 ORTHO05D006450 8.3e-44 182.6 571 32.9
FAN24G2500 Fragaria x ananassa HOM05D005442 ORTHO05D006450 1.1e-43 182.2 293 43.0
AUR62013010 Chenopodium quinoa HOM05D005442 ORTHO05D006450 1.4e-43 181.8 549 31.3
Aqoxy6G02079 Aquilegia oxysepala HOM05D005442 ORTHO05D006450 1.8e-43 181.4 444 34.2
CARHR033820 Cardamine hirsuta HOM05D005442 ORTHO05D006450 5.4e-43 179.9 330 40.0
Os02g0101100 Oryza sativa ssp. japonica HOM05D005442 ORTHO05D006450 1.6e-42 178.3 307 39.7
RcHm_v2.0_Chr6g0278721 Rosa chinensis HOM05D005442 ORTHO05D006450 1.1e-40 172.2 560 32.1
HPP92_022198 Vanilla planifolia HOM05D005442 ORTHO05D006450 1.5e-40 171.8 601 33.6
TWI79G1761 Tripterygium wilfordii HOM05D005442 ORTHO05D006450 5.6e-40 169.9 223 46.6
Zm00001eb134390 Zea mays HOM05D005442 ORTHO05D006450 9.5e-40 169.1 500 34.0
Lj5A177G53 Lonicera japonica HOM05D005442 ORTHO05D006450 3.6e-39 167.2 175 56.0
HPP92_022180 Vanilla planifolia HOM05D005442 ORTHO05D006450 3.6e-39 167.2 601 33.1
arahy.Tifrunner.gnm1.ann1.U87P2U Arachis hypogaea HOM05D005442 ORTHO05D006450 1.5e-37 161.8 175 53.1
FAN20G2789 Fragaria x ananassa HOM05D005442 ORTHO05D006450 4.4e-37 160.2 555 31.9
FAN27G2972 Fragaria x ananassa HOM05D005442 ORTHO05D006450 5.8e-37 159.8 556 32.4
SalBow1G0486 Salvia bowleyana HOM05D005442 ORTHO05D006450 1.3e-36 158.7 576 30.2
Rhsim05G0053500 Rhododendron simsii HOM05D005442 ORTHO05D006450 3.5e-34 150.6 262 39.3
Ah.01g023170 Amaranthus hybridus HOM05D005442 ORTHO05D006450 3.0e-33 147.5 579 31.3
Atru.chr3.3284 Acer truncatum HOM05D005442 ORTHO05D006450 1.9e-32 144.8 175 46.9
HanXRQChr08g0227271 Helianthus annuus HOM05D005442 ORTHO05D006450 2.5e-32 144.4 203 46.3
TPR.G2470 Trifolium pratense HOM05D005442 ORTHO05D006450 1.8e-30 138.3 431 31.6
Oeu015514.1 Olea europaea HOM05D005442 ORTHO05D006450 4.0e-30 137.1 156 48.7
VMungo0720G2182 Vigna mungo HOM05D005442 ORTHO05D006450 9.8e-29 132.5 384 33.3
Mapoly0037s0141 Marchantia polymorpha HOM05D005442 ORTHO05D006450 8.3e-28 129.4 229 37.6
CAN.G588.93 Capsicum annuum HOM05D005442 ORTHO05D006450 3.2e-27 127.5 174 46.0
SHI05769 Sapria himalayana HOM05D005442 ORTHO05D006450 3.2e-27 127.5 363 32.5
SMO171G0119 Selaginella moellendorffii HOM05D005442 ORTHO05D006450 6.6e-25 119.8 220 36.8
Pp3c27_2790 Physcomitrium patens HOM05D005442 ORTHO05D006450 1.9e-24 118.2 235 35.7
Pp3c16_14950 Physcomitrium patens HOM05D005442 ORTHO05D006450 2.5e-24 117.9 190 41.1
HPP92_028071 Vanilla planifolia HOM05D005442 ORTHO05D006450 2.8e-23 114.4 520 30.2
AagrBONN_evm.TU.Sc2ySwM_344.3952 Anthoceros agrestis HOM05D005442 ORTHO05D006450 3.6e-23 114.0 234 35.5
Cc02_g27640 Coffea canephora HOM05D005442 ORTHO05D006450 2.3e-22 111.3 423 30.5
Rhsim05G0053300 Rhododendron simsii HOM05D005442 ORTHO05D006450 5.8e-21 106.7 125 52.8
Lj5A177G54 Lonicera japonica HOM05D005442 ORTHO05D006450 2.9e-20 104.4 241 37.3
Cfa023336 Carpinus fangiana HOM05D005442 ORTHO05D006450 4.9e-20 103.6 309 33.0
C03p57670 Brassica napus HOM05D005442 ORTHO05D006450 9.2e-19 99.4 179 37.4
BolC3t18042H Brassica oleracea HOM05D005442 ORTHO05D013811 2.1e-18 98.2 114 45.6
BcaC01g02969 Brassica carinata HOM05D005442 ORTHO05D006450 7.8e-18 96.3 101 50.5
CBR_g29438 Chara braunii HOM05D005442 ORTHO05D006450 8.6e-17 92.8 211 33.6
C03p57690 Brassica napus HOM05D005442 ORTHO05D013811 4.7e-15 87.0 114 43.0
Oeu032532.1 Olea europaea HOM05D005442 ORTHO05D006450 4.0e-14 84.0 121 44.6
MCO13G079 Micromonas commoda HOM05D005442 ORTHO05D006450 2.2e-12 78.2 160 36.9
Actinidia39161 Actinidia chinensis HOM05D005442 ORTHO05D006450 3.8e-12 77.4 377 29.2
SMO353G0310 Selaginella moellendorffii HOM05D004690 ORTHO05D005527 3.5e-10 70.9 125 33.6
Rhsim09G0155200 Rhododendron simsii HOM05D005442 ORTHO05D006450 4.6e-10 70.5 58 55.2
CAN.G588.92 Capsicum annuum HOM05D005442 ORTHO05D006450 1.3e-09 68.9 359 29.0
Atru.chr5.3383 Acer truncatum HOM05D005442 ORTHO05D006450 6.6e-09 66.6 127 41.7
Cfa021053 Carpinus fangiana HOM05D004690 ORTHO05D005527 1.1e-08 65.9 120 34.2
BolC3t18043H Brassica oleracea HOM05D008551 ORTHO05D006450 3.3e-08 64.3 78 42.3
Pp3c14_5800 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.6e-07 62.0 217 28.6
SEGI_12526 Sequoiadendron giganteum HOM05D005442 ORTHO05D006450 1.6e-07 62.0 42 66.7
CBR_g7972 Chara braunii HOM05D004690 ORTHO05D005527 2.1e-07 61.6 130 30.8
MD10G1126600 Malus domestica HOM05D005442 ORTHO05D006450 2.8e-07 61.2 72 45.8
Mapoly0090s0068 Marchantia polymorpha HOM05D004690 ORTHO05D005527 2.8e-07 61.2 119 31.9
MCO15G501 Micromonas commoda HOM05D004690 ORTHO05D005527 4.8e-07 60.5 191 27.2
THA.LOC104803547 Tarenaya hassleriana HOM05D004690 ORTHO05D005527 4.8e-07 60.5 113 32.7
Pp3c2_19940 Physcomitrium patens HOM05D004690 ORTHO05D005527 1.4e-06 58.9 126 31.7
Psat7g006440 Pisum sativum HOM05D004690 ORTHO05D005527 1.4e-06 58.9 190 26.8
AagrBONN_evm.TU.Sc2ySwM_228.3886 Anthoceros agrestis HOM05D004690 ORTHO05D005527 3.1e-06 57.8 119 30.3
BcaC01g02968 Brassica carinata HOM05D005442 ORTHO05D006450 4.0e-06 57.4 123 31.7
PRCOL_00002519 Prasinoderma coloniale HOM05D004690 ORTHO05D005527 6.9e-06 56.6 116 31.0
Sed0014938 Sechium edule HOM05D004690 ORTHO05D005527 6.9e-06 56.6 110 31.8
C03p57650 Brassica napus HOM05D005442 ORTHO05D006450 9.0e-06 56.2 51 52.9
BolC3t18039H Brassica oleracea HOM05D005442 ORTHO05D006450 9.0e-06 56.2 51 52.9
Gohir.A07G037900 Gossypium hirsutum HOM05D004690 ORTHO05D005527 9.0e-06 56.2 139 28.1
Gohir.D07G042000 Gossypium hirsutum HOM05D004690 ORTHO05D005527 9.0e-06 56.2 139 28.1
Gorai.001G044800 Gossypium raimondii HOM05D004690 ORTHO05D005527 9.0e-06 56.2 139 28.1


User provided reference genes

Program Settings