Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 0.0e+00 1091.6 541 100.0
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 1.5e-284 982.2 560 89.8
Sabra09G0085900 Salix brachista HOM05D007742 ORTHO05D004072 1.6e-236 822.8 449 93.3
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 1.5e-218 763.1 561 73.1
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 5.6e-218 761.1 561 73.1
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.3e-131 473.4 339 71.7
Manes.04G094400 Manihot esculenta HOM05D007742 ORTHO05D004072 4.9e-89 332.8 599 40.4
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 6.1e-63 246.1 602 31.6
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 3.9e-62 243.4 608 32.4
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 5.7e-61 239.6 604 32.9
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.6e-55 221.5 612 31.2
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 1.0e-54 218.8 636 31.8
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 1.5e-50 204.9 636 30.8
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 6.1e-47 193.0 628 29.6
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 1.7e-44 184.9 634 27.6
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 1.8e-43 181.4 560 28.9
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 1.6e-42 178.3 629 28.6
Duzib138G0881 Durio zibethinus HOM05D007742 ORTHO05D004072 6.5e-41 172.9 587 28.3
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 6.7e-38 162.9 536 28.2
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 3.3e-37 160.6 494 28.5
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 1.1e-32 145.6 616 24.8
Hma1.2p1_0868F.1_g230420 Hydrangea macrophylla HOM05D007742 ORTHO05D004072 7.2e-32 142.9 528 28.6
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 2.7e-31 141.0 618 25.9
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 8.0e-31 139.4 497 25.4
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 1.8e-30 138.3 659 25.2
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 1.2e-29 135.6 459 26.1
VMungo0464G0864 Vigna mungo HOM05D007742 ORTHO05D004072 5.7e-29 133.3 600 26.7
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 2.8e-28 131.0 481 25.8
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 2.8e-28 131.0 219 37.0
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 4.8e-28 130.2 574 27.0
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 6.3e-28 129.8 497 26.2
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 6.3e-28 129.8 242 36.0
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 5.4e-27 126.7 660 23.9
BcaC04g22033 Brassica carinata HOM05D009880 ORTHO05D004072 2.7e-26 124.4 137 43.8
Migut.A00628 Erythranthe guttata HOM05D007742 ORTHO05D004072 3.5e-26 124.0 584 26.4
C09p24280 Brassica napus HOM05D009880 ORTHO05D004072 5.9e-26 123.2 137 43.8
BolC9t55345H Brassica oleracea HOM05D009880 ORTHO05D004072 5.9e-26 123.2 137 43.8
BcaB07g31107 Brassica carinata HOM05D009880 ORTHO05D004072 7.7e-26 122.9 138 42.8
BraA09t37545Z Brassica rapa HOM05D009880 ORTHO05D004072 7.7e-26 122.9 137 43.8
Hund19588 Selenicereus undatus HOM05D007742 ORTHO05D004072 3.8e-25 120.6 502 27.5
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 6.6e-25 119.8 156 39.7
A09p19280 Brassica napus HOM05D009880 ORTHO05D004072 1.5e-24 118.6 137 43.1
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 1.9e-24 118.2 372 28.2
Duzib138G1433 Durio zibethinus HOM05D018961 ORTHO05D004072 4.2e-24 117.1 259 30.9
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 7.2e-24 116.3 486 24.3
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 7.2e-24 116.3 502 25.9
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 4.7e-23 113.6 163 38.0
Phvul.001G079300 Phaseolus vulgaris HOM05D007742 ORTHO05D004072 4.7e-23 113.6 591 25.7
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 8.0e-23 112.8 527 24.5
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 1.4e-22 112.1 501 26.1
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 2.3e-22 111.3 144 38.9
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 2.3e-22 111.3 221 33.9
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 2.3e-22 111.3 221 33.9
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 4.0e-22 110.5 486 24.3
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 8.9e-22 109.4 493 24.5
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 8.9e-22 109.4 213 33.8
arahy.Tifrunner.gnm1.ann1.H02ZFL Arachis hypogaea HOM05D007742 ORTHO05D004072 1.2e-21 109.0 564 25.0
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 1.2e-21 109.0 590 25.4
arahy.Tifrunner.gnm1.ann1.L07F2C Arachis hypogaea HOM05D007742 ORTHO05D004072 1.5e-21 108.6 568 24.6
MSTRG.25687 Avicennia marina HOM05D007742 ORTHO05D004072 2.0e-21 108.2 427 26.0
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 2.6e-21 107.8 541 24.8
QL02p069122 Quercus lobata HOM05D007742 ORTHO05D004072 3.4e-21 107.5 515 26.8
CANSAT64G0751 Cannabis sativa HOM05D007742 ORTHO05D004072 2.2e-20 104.8 549 25.9
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 3.7e-20 104.0 155 35.5
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 3.7e-20 104.0 98 49.0
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 3.7e-20 104.0 176 37.5
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 4.9e-20 103.6 493 26.4
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 6.3e-20 103.2 170 35.3
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 6.3e-20 103.2 176 37.5
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 6.3e-20 103.2 177 35.6
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 6.3e-20 103.2 166 34.3
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 8.3e-20 102.8 163 37.4
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 1.8e-19 101.7 154 35.1
Gorai.001G095300 Gossypium raimondii HOM05D018961 ORTHO05D004072 2.4e-19 101.3 171 34.5
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 3.1e-19 100.9 589 25.5
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 5.4e-19 100.1 170 35.9
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 5.4e-19 100.1 568 23.4
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 9.2e-19 99.4 172 37.2
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 9.2e-19 99.4 161 35.4
Gohir.D07G088900 Gossypium hirsutum HOM05D018961 ORTHO05D004072 1.2e-18 99.0 171 33.9
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 1.6e-18 98.6 182 35.7
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 2.7e-18 97.8 138 37.0
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 2.7e-18 97.8 161 34.8
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 2.7e-18 97.8 166 34.3
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 3.5e-18 97.4 181 30.9
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 5.9e-18 96.7 151 35.8
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 5.9e-18 96.7 177 33.9
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 7.8e-18 96.3 174 33.9
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 1.0e-17 95.9 155 33.5
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 1.0e-17 95.9 155 33.5
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 1.0e-17 95.9 137 38.7
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 1.3e-17 95.5 581 25.1
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 1.7e-17 95.1 136 36.8
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 2.3e-17 94.7 183 33.3
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 2.3e-17 94.7 156 32.1
QL09p009056 Quercus lobata HOM05D004225 ORTHO05D004728 2.9e-17 94.4 157 39.5
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 2.9e-17 94.4 164 32.9
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 3.8e-17 94.0 139 36.0
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 3.8e-17 94.0 174 32.8
AUR62037803 Chenopodium quinoa HOM05D007742 ORTHO05D004072 5.0e-17 93.6 156 39.7
COL.COLO4_13391 Corchorus olitorius HOM05D018961 ORTHO05D004072 5.0e-17 93.6 282 28.4
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 6.6e-17 93.2 175 32.0
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 1.1e-16 92.4 158 32.3
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 1.9e-16 91.7 137 35.8
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 1.9e-16 91.7 142 36.6
TPR.G26439 Trifolium pratense HOM05D007742 ORTHO05D004072 1.9e-16 91.7 578 24.9
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 3.3e-16 90.9 143 34.3
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 7.3e-16 89.7 164 31.7
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 7.3e-16 89.7 164 31.7
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 9.5e-16 89.4 188 31.4
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 9.5e-16 89.4 137 35.0
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 1.6e-15 88.6 185 29.7
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 1.6e-15 88.6 184 31.0
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 2.8e-15 87.8 135 34.1
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 3.6e-15 87.4 196 29.1
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.4e-14 85.5 96 47.9
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 1.4e-14 85.5 118 36.4
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 3.0e-14 84.3 162 30.9
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 4.0e-14 84.0 127 40.2
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 5.2e-14 83.6 171 32.2
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 5.2e-14 83.6 115 34.8
EL10As2g23251 Beta vulgaris HOM05D007742 ORTHO05D004072 2.6e-13 81.3 152 34.9
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 2.6e-13 81.3 131 34.4
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 2.6e-13 81.3 163 33.7
Peaxi162Scf00420g00831 Petunia axillaris HOM05D007742 ORTHO05D004072 4.4e-13 80.5 188 32.4
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 5.8e-13 80.1 124 35.5
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 7.5e-13 79.7 147 29.9
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 2.2e-12 78.2 91 44.0
CSS0018935 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 8.3e-12 76.3 178 34.3
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 8.3e-12 76.3 90 41.1
vmacro18397 Vaccinium macrocarpon HOM05D007742 ORTHO05D004072 1.1e-11 75.9 186 32.3
PGSC0003DMG400020234 Solanum tuberosum HOM05D007742 ORTHO05D004072 2.4e-11 74.7 144 32.6
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 3.2e-11 74.3 87 43.7
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 3.2e-11 74.3 134 31.3
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 5.4e-11 73.6 225 28.9
Rhsim08G0038200 Rhododendron simsii HOM05D000001 ORTHO05D000003 7.0e-11 73.2 188 29.3
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 2.0e-10 71.6 94 42.6
DCAR_008617 Daucus carota HOM05D007742 ORTHO05D004072 4.6e-10 70.5 222 29.7
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 6.0e-10 70.1 93 40.9
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 6.0e-10 70.1 93 43.0
Lj7P618T64 Lonicera japonica HOM05D007742 ORTHO05D004072 6.0e-10 70.1 154 31.2
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.0e-09 69.3 245 27.3
CSS0036601 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 8.6e-09 66.2 122 38.5
BolC3t13228H Brassica oleracea HOM05D009880 ORTHO05D004072 5.6e-08 63.5 134 33.6
Lj4C830T7 Lonicera japonica HOM05D002182 ORTHO05D004671 5.6e-08 63.5 125 32.0
GSVIVG01032966001 Vitis vinifera HOM05D007742 ORTHO05D004072 9.5e-08 62.8 51 49.0
Ca_16979_v3 Cicer arietinum L. HOM05D002182 ORTHO05D004671 1.2e-07 62.4 114 36.8
COL.COLO4_35815 Corchorus olitorius HOM05D002182 ORTHO05D004671 2.1e-07 61.6 118 36.4
MBI11_g02483_MAGBIO Magnolia biondii HOM05D056835 ORTHO05D004072 2.1e-07 61.6 83 42.2
Thecc.01G137400 Theobroma cacao HOM05D002182 ORTHO05D004671 2.1e-07 61.6 116 37.1
Ah.01g013150 Amaranthus hybridus HOM05D008124 ORTHO05D004072 4.7e-07 60.5 86 37.2
CSS0012545 Camellia sinensis var. sinensis HOM05D000995 ORTHO05D000638 6.2e-07 60.1 204 28.4
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 6.2e-07 60.1 108 38.9
C02p63020 Brassica napus HOM05D002182 ORTHO05D017531 8.0e-07 59.7 138 31.9
Eucgr.H05141 Eucalyptus grandis HOM05D002182 ORTHO05D004671 8.0e-07 59.7 115 35.7
Gohir.A11G057700 Gossypium hirsutum HOM05D002182 ORTHO05D004671 8.0e-07 59.7 117 35.0
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 8.0e-07 59.7 125 36.0
THA.LOC104818422 Tarenaya hassleriana HOM05D002182 ORTHO05D004671 8.0e-07 59.7 108 38.0
Gorai.007G066700 Gossypium raimondii HOM05D002182 ORTHO05D004671 1.1e-06 59.3 118 34.7
Lj1g0008046 Lotus japonicus HOM05D002182 ORTHO05D004671 1.1e-06 59.3 114 35.1
BcaB07g29709 Brassica carinata HOM05D002182 ORTHO05D004671 2.3e-06 58.2 115 33.9
CSS0006654 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 2.3e-06 58.2 73 41.1
CSS0017436 Camellia sinensis var. sinensis HOM05D008124 ORTHO05D004072 2.3e-06 58.2 73 41.1
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 2.3e-06 58.2 111 34.2
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 2.3e-06 58.2 58 51.7
Duzib264G0915 Durio zibethinus HOM05D002182 ORTHO05D004671 3.1e-06 57.8 117 34.2
Potri.005G067100 Populus trichocarpa HOM05D002182 ORTHO05D004671 3.1e-06 57.8 122 33.6
Aa31LG1G17970 Aethionema arabicum HOM05D002182 ORTHO05D004671 4.0e-06 57.4 117 34.2
ATR0582G234 Amborella trichopoda HOM05D007742 ORTHO05D004072 4.0e-06 57.4 117 33.3
Gohir.D11G061900 Gossypium hirsutum HOM05D002182 ORTHO05D004671 4.0e-06 57.4 118 34.7
Atru.chr4.980 Acer truncatum HOM05D002182 ORTHO05D004671 5.2e-06 57.0 98 36.7
Actinidia20028 Actinidia chinensis HOM05D002182 ORTHO05D004671 5.2e-06 57.0 118 34.7
Lsat_1_v5_gn_3_56760 Lactuca sativa HOM05D010091 ORTHO05D000529 5.2e-06 57.0 67 44.8
BraA02t09226Z Brassica rapa HOM05D002182 ORTHO05D004671 6.8e-06 56.6 109 33.0
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 6.8e-06 56.6 84 39.3
A02p43050 Brassica napus HOM05D002182 ORTHO05D004671 8.9e-06 56.2 109 33.0
Thhalv10003618m.g Eutrema salsugineum HOM05D002182 ORTHO05D004671 8.9e-06 56.2 113 31.9
Lsat_1_v5_gn_4_63641 Lactuca sativa HOM05D010091 ORTHO05D012356 8.9e-06 56.2 69 42.0


User provided reference genes

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