Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0056500 Salix brachista HOM05D005995 ORTHO05D007362 2.5e-98 362.1 179 100.0
Potri.009G074400 Populus trichocarpa HOM05D005995 ORTHO05D007362 1.7e-86 322.8 179 91.1
Potri.001G279700 Populus trichocarpa HOM05D005995 ORTHO05D007362 1.1e-85 320.1 179 89.4
Thecc.09G353200 Theobroma cacao HOM05D005995 ORTHO05D007362 7.3e-74 280.8 179 81.6
Haze_24375 Corylus avellana HOM05D005995 ORTHO05D007362 9.6e-74 280.4 179 81.0
QL01p039263 Quercus lobata HOM05D005995 ORTHO05D007362 6.2e-73 277.7 178 79.8
Sabra16G0173300 Salix brachista HOM05D005995 ORTHO05D007362 3.1e-72 275.4 208 71.2
Cfa011735 Carpinus fangiana HOM05D005995 ORTHO05D007362 5.3e-72 274.6 179 79.3
CiPaw.14G056700 Carya illinoinensis HOM05D005995 ORTHO05D007362 9.0e-72 273.9 179 78.8
Manes.17G003200 Manihot esculenta HOM05D005995 ORTHO05D007362 9.0e-72 273.9 179 78.8
Duzib168G2258 Durio zibethinus HOM05D005995 ORTHO05D007362 1.5e-71 273.1 179 80.4
Duzib170G0863 Durio zibethinus HOM05D005995 ORTHO05D007362 5.8e-71 271.2 180 79.4
CSS0037016 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 9.9e-71 270.4 179 77.7
CSS0047754 Camellia sinensis var. sinensis HOM05D005995 ORTHO05D007362 9.9e-71 270.4 179 77.7
Cc01_g14560 Coffea canephora HOM05D005995 ORTHO05D007362 2.9e-70 268.9 179 76.0
Cpa.g.sc2.418 Carica papaya HOM05D005995 ORTHO05D007362 4.9e-70 268.1 176 76.7
Nn2g14523 Nelumbo nucifera HOM05D005995 ORTHO05D007362 4.9e-70 268.1 177 74.0
GSVIVG01024692001 Vitis vinifera HOM05D005995 ORTHO05D007362 6.4e-70 267.7 179 77.7
COL.COLO4_11080 Corchorus olitorius HOM05D005995 ORTHO05D007362 1.9e-69 266.2 177 79.1
Aqoxy4G02443 Aquilegia oxysepala HOM05D005995 ORTHO05D007362 6.0e-68 261.2 177 72.9
Ciclev10029374m.g Citrus clementina HOM05D005995 ORTHO05D007362 6.0e-68 261.2 178 74.7
Phvul.006G070800 Phaseolus vulgaris HOM05D005995 ORTHO05D007362 1.0e-67 260.4 178 74.2
CiPaw.13G073700 Carya illinoinensis HOM05D005995 ORTHO05D007362 3.0e-67 258.8 171 76.6
TAR623G0738 Trochodendron aralioides HOM05D005995 ORTHO05D007362 3.9e-67 258.5 177 74.6
VMungo0540G0986 Vigna mungo HOM05D005995 ORTHO05D007362 5.1e-67 258.1 178 73.6
AUR62023851 Chenopodium quinoa HOM05D005995 ORTHO05D007362 6.7e-67 257.7 180 73.3
Actinidia23218 Actinidia chinensis HOM05D005995 ORTHO05D007362 8.7e-67 257.3 179 74.3
arahy.Tifrunner.gnm1.ann1.SCP5PP Arachis hypogaea HOM05D005995 ORTHO05D007362 1.5e-66 256.5 182 72.0
Dinv09649 Davidia involucrata HOM05D002227 ORTHO05D002337 1.5e-66 256.5 179 73.7
TAR131G0002 Trochodendron aralioides HOM05D005995 ORTHO05D007362 2.5e-66 255.8 177 73.4
Glyma.11G168600 Glycine max HOM05D005995 ORTHO05D007362 9.6e-66 253.8 180 73.3
Nitab4.5_0013485g0010 Nicotiana tabacum HOM05D005995 ORTHO05D007362 1.6e-65 253.1 177 75.1
ClCG03G000500 Citrullus lanatus HOM05D005995 ORTHO05D007362 3.7e-65 251.9 179 70.9
Sopen06g033540 Solanum pennellii HOM05D005995 ORTHO05D007362 4.8e-65 251.5 177 74.0
PGSC0003DMG400030447 Solanum tuberosum HOM05D005995 ORTHO05D007362 4.8e-65 251.5 177 74.0
Gohir.A13G233500 Gossypium hirsutum HOM05D005995 ORTHO05D007362 6.2e-65 251.1 153 83.0
MELO3C020526.2 Cucumis melo HOM05D005995 ORTHO05D007362 8.1e-65 250.8 179 70.9
CsaV3_1G036430 Cucumis sativus L. HOM05D005995 ORTHO05D007362 1.1e-64 250.4 179 70.4
FAN21G0787 Fragaria x ananassa HOM05D005995 ORTHO05D007362 1.1e-64 250.4 178 71.9
FAN25G2223 Fragaria x ananassa HOM05D005995 ORTHO05D007362 1.4e-64 250.0 178 72.5
EL10Ac3g05994 Beta vulgaris HOM05D005995 ORTHO05D007362 3.1e-64 248.8 178 71.9
Solyc06g082160.4 Solanum lycopersicum HOM05D005995 ORTHO05D007362 3.1e-64 248.8 177 73.4
Rhsim13G0066700 Rhododendron simsii HOM05D005995 ORTHO05D007362 4.0e-64 248.4 164 78.0
TAR633G2447 Trochodendron aralioides HOM05D005995 ORTHO05D007362 6.9e-64 247.7 175 73.1
Sed0015986 Sechium edule HOM05D005995 ORTHO05D007362 1.5e-63 246.5 178 69.1
CAN.G1095.10 Capsicum annuum HOM05D005995 ORTHO05D007362 2.0e-63 246.1 177 72.3
vmacro02942 Vaccinium macrocarpon HOM05D005995 ORTHO05D007362 3.4e-63 245.4 166 76.5
Hund06617 Selenicereus undatus HOM05D005995 ORTHO05D007362 5.8e-63 244.6 177 71.2
Ca_14969_v3 Cicer arietinum L. HOM05D005995 ORTHO05D007362 1.3e-62 243.4 177 70.1
Medtr3g465040 Medicago truncatula HOM05D005995 ORTHO05D007362 8.4e-62 240.7 177 68.9
Oeu031050.1 Olea europaea HOM05D005995 ORTHO05D007362 1.4e-61 240.0 179 70.4
FAN16G3099 Fragaria x ananassa HOM05D005995 ORTHO05D007362 1.9e-61 239.6 178 70.2
ATR0681G053 Amborella trichopoda HOM05D005995 ORTHO05D007362 2.5e-61 239.2 181 66.9
Eucgr.B02232 Eucalyptus grandis HOM05D005995 ORTHO05D007362 5.5e-61 238.0 147 80.3
MD03G1063100 Malus domestica HOM05D005995 ORTHO05D007362 5.5e-61 238.0 182 70.9
MSTRG.10034 Avicennia marina HOM05D005995 ORTHO05D007362 2.1e-60 236.1 174 69.5
RcHm_v2.0_Chr5g0070551 Rosa chinensis HOM05D005995 ORTHO05D007362 4.6e-60 235.0 178 68.5
FvH4_3g39150 Fragaria vesca HOM05D005995 ORTHO05D007362 6.0e-60 234.6 178 68.5
Psat0s2070g0120 Pisum sativum HOM05D005995 ORTHO05D007362 7.9e-60 234.2 179 67.6
Lalb_Chr20g0114841 Lupinus albus HOM05D005995 ORTHO05D007362 1.8e-59 233.0 180 67.2
Gohir.D13G239100 Gossypium hirsutum HOM05D005995 ORTHO05D007362 3.0e-59 232.3 178 69.7
Gorai.013G270000 Gossypium raimondii HOM05D005995 ORTHO05D007362 3.0e-59 232.3 178 69.7
FAN11G1452 Fragaria x ananassa HOM05D005995 ORTHO05D007362 3.9e-59 231.9 178 68.0
DCAR_015647 Daucus carota HOM05D005995 ORTHO05D007362 5.1e-59 231.5 176 67.0
TPR.G32896 Trifolium pratense HOM05D005995 ORTHO05D007362 6.7e-59 231.1 178 69.7
Peaxi162Scf00540g00015 Petunia axillaris HOM05D005995 ORTHO05D007362 1.1e-58 230.3 177 69.5
CANSAT54G2854 Cannabis sativa HOM05D005995 ORTHO05D007362 1.9e-58 229.6 174 69.5
Lalb_Chr18g0051191 Lupinus albus HOM05D005995 ORTHO05D007362 2.5e-58 229.2 182 67.0
Glyma.18G060000 Glycine max HOM05D005995 ORTHO05D007362 5.7e-58 228.0 164 72.6
arahy.Tifrunner.gnm1.ann1.6174C5 Arachis hypogaea HOM05D005995 ORTHO05D007362 7.4e-58 227.6 169 71.0
Lj6g0019722 Lotus japonicus HOM05D005995 ORTHO05D007362 9.6e-58 227.3 165 70.3
Nitab4.5_0002043g0030 Nicotiana tabacum HOM05D005995 ORTHO05D007362 2.1e-57 226.1 177 68.4
PGR031G2980 Punica granatum HOM05D005995 ORTHO05D007362 2.1e-57 226.1 181 65.7
Actinidia02782 Actinidia chinensis HOM05D005995 ORTHO05D007362 1.8e-56 223.0 135 81.5
Prupe.6G053100 Prunus persica HOM05D005995 ORTHO05D007362 1.8e-56 223.0 181 67.4
SGA_v2.0_scaffold371G50155 Striga asiatica HOM05D005995 ORTHO05D007362 5.3e-56 221.5 158 69.0
Sp6g20270 Schrenkiella parvula HOM05D005995 ORTHO05D007362 2.6e-55 219.2 172 66.3
AL8G34810 Arabidopsis lyrata HOM05D005995 ORTHO05D007362 4.5e-55 218.4 172 65.1
Atru.chr3.4142 Acer truncatum HOM05D005995 ORTHO05D007362 1.0e-54 217.2 236 54.7
AT5G58575 Arabidopsis thaliana HOM05D005995 ORTHO05D007362 1.7e-54 216.5 172 64.5
Carub.0008s1918 Capsella rubella HOM05D005995 ORTHO05D007362 1.7e-54 216.5 172 64.5
CDE10G1344 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 3.8e-54 215.3 168 64.9
MD11G1066600 Malus domestica HOM05D005995 ORTHO05D007362 3.8e-54 215.3 182 66.5
PSO170G4292 Papaver somniferum HOM05D005995 ORTHO05D007362 3.8e-54 215.3 138 77.5
ECA248G1932 Erigeron canadensis HOM05D005995 ORTHO05D007362 5.0e-54 214.9 138 80.4
PSO017G3188 Papaver somniferum HOM05D005995 ORTHO05D007362 1.1e-53 213.8 138 77.5
CARHR272410 Cardamine hirsuta HOM05D005995 ORTHO05D007362 1.4e-53 213.4 173 64.7
Thhalv10014805m.g Eutrema salsugineum HOM05D005995 ORTHO05D007362 1.4e-53 213.4 172 65.7
THA.LOC104799390 Tarenaya hassleriana HOM05D005995 ORTHO05D007362 7.1e-53 211.1 164 68.9
HanXRQChr11g0334701 Helianthus annuus HOM05D005995 ORTHO05D007362 9.3e-53 210.7 133 78.2
Migut.N00147 Erythranthe guttata HOM05D005995 ORTHO05D007362 1.8e-51 206.5 177 62.1
HPP92_012020 Vanilla planifolia HOM05D005995 ORTHO05D007362 2.3e-51 206.1 161 65.8
TWI79G0924 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 3.9e-51 205.3 183 62.8
Sc06g0010410 Simmondsia chinensis HOM05D005995 ORTHO05D007362 5.1e-51 204.9 137 75.9
MBI03_g03955_MAGBIO Magnolia biondii HOM05D005995 ORTHO05D007362 2.5e-50 202.6 122 80.3
BolC3t13867H Brassica oleracea HOM05D005995 ORTHO05D007362 4.8e-49 198.4 134 73.1
Aa31LG11G350 Aethionema arabicum HOM05D005995 ORTHO05D007362 8.2e-49 197.6 144 71.5
CDE10G0962 Ceratophyllum demersum HOM05D005995 ORTHO05D007362 8.2e-49 197.6 166 62.7
unitig_62.g23487 Utricularia gibba HOM05D005995 ORTHO05D007362 8.2e-49 197.6 179 61.5
BcaC01g06637 Brassica carinata HOM05D005995 ORTHO05D007362 3.1e-48 195.7 136 72.1
A03p12120 Brassica napus HOM05D005995 ORTHO05D007362 4.1e-48 195.3 134 72.4
BraA03t10524Z Brassica rapa HOM05D005995 ORTHO05D007362 4.1e-48 195.3 134 72.4
BcaB01g04505 Brassica carinata HOM05D005995 ORTHO05D007362 5.3e-48 194.9 135 71.9
Lsat_1_v5_gn_5_173181 Lactuca sativa HOM05D005995 ORTHO05D007362 6.9e-48 194.5 133 75.9
MD11G1066800 Malus domestica HOM05D005995 ORTHO05D007362 6.9e-48 194.5 159 66.7
Sed0014404 Sechium edule HOM05D005995 ORTHO05D007362 3.4e-47 192.2 164 64.0
BcaNung06849 Brassica carinata HOM05D002227 ORTHO05D007362 2.7e-44 182.6 135 68.9
AUR62002337 Chenopodium quinoa HOM05D005995 ORTHO05D007362 3.9e-43 178.7 125 71.2
Gohir.A05G107700 Gossypium hirsutum HOM05D005995 ORTHO05D007362 4.3e-42 175.3 179 58.1
Lj1P130T21 Lonicera japonica HOM05D005995 ORTHO05D007362 5.7e-42 174.9 107 79.4
MD11G1152800 Malus domestica HOM05D005995 ORTHO05D007362 1.3e-41 173.7 112 77.7
TWI31G1135 Tripterygium wilfordii HOM05D005995 ORTHO05D007362 2.8e-41 172.6 143 64.3
Mapoly0008s0254 Marchantia polymorpha HOM05D005995 ORTHO05D007362 2.6e-39 166.0 173 53.2
SEGI_16655 Sequoiadendron giganteum HOM05D005995 ORTHO05D007362 2.6e-39 166.0 168 54.2
Os05g0351500 Oryza sativa ssp. japonica HOM05D005995 ORTHO05D007362 1.9e-37 159.8 189 50.3
Gohir.D05G107900 Gossypium hirsutum HOM05D005995 ORTHO05D007362 3.2e-37 159.1 179 54.7
Zm00001eb286290 Zea mays HOM05D005995 ORTHO05D007362 2.1e-36 156.4 168 50.6
Pp3c7_14690 Physcomitrium patens HOM05D005995 ORTHO05D007362 3.3e-34 149.1 141 56.7
C03p14210 Brassica napus HOM05D005995 ORTHO05D007362 2.5e-29 132.9 113 59.3
Pp3c11_11530 Physcomitrium patens HOM05D001687 ORTHO05D001608 2.3e-27 126.3 136 50.0
SMO358G0374 Selaginella moellendorffii HOM05D005995 ORTHO05D007362 2.8e-25 119.4 99 60.6
BcaC01g06639 Brassica carinata HOM05D005995 ORTHO05D007362 8.2e-25 117.9 119 56.3
Gorai.009G112000 Gossypium raimondii HOM05D005995 ORTHO05D007362 1.1e-24 117.5 123 55.3
AagrBONN_evm.TU.Sc2ySwM_344.2127 Anthoceros agrestis HOM05D005995 ORTHO05D007362 1.4e-24 117.1 103 57.3
MD11G1153100 Malus domestica HOM05D005995 ORTHO05D007362 4.2e-21 105.5 80 70.0
Actinidia32626 Actinidia chinensis HOM05D005995 ORTHO05D007362 3.6e-20 102.4 72 75.0
HPP92_013780 Vanilla planifolia HOM05D005995 ORTHO05D007362 2.3e-19 99.8 85 61.2
CBR_g49952 Chara braunii HOM05D000019 ORTHO05D000002 7.5e-18 94.7 135 43.0
MD11G1071300 Malus domestica HOM05D005995 ORTHO05D007362 8.3e-17 91.3 83 59.0
Cre17.g719550 Chlamydomonas reinhardtii HOM05D005995 ORTHO05D007362 3.0e-11 72.8 54 59.3
Nn2g14856 Nelumbo nucifera HOM05D005995 ORTHO05D007362 3.4e-10 69.3 60 61.7
Pp3c4_14820 Physcomitrium patens HOM05D005995 ORTHO05D311899 3.1e-08 62.8 116 39.7
Medtr6g460490 Medicago truncatula HOM05D005995 ORTHO05D007362 1.7e-06 57.0 33 78.8
MCO04G081 Micromonas commoda HOM05D005995 ORTHO05D007362 1.7e-06 57.0 164 32.9


User provided reference genes

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