Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 4.9e-228 794.3 441 100.0
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 2.5e-200 702.2 441 84.8
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 2.1e-199 699.1 441 83.0
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 6.9e-190 667.5 457 82.5
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 1.4e-166 590.1 444 76.8
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 3.6e-162 575.5 448 73.4
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 5.1e-153 545.0 457 71.3
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.0e-152 543.1 442 67.9
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 3.3e-152 542.3 442 67.9
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.3e-152 542.3 442 67.9
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 9.7e-152 540.8 448 70.5
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.7e-151 540.0 448 70.5
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 2.2e-151 539.7 448 70.5
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.8e-151 539.3 442 67.2
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 2.4e-150 536.2 496 61.3
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 5.3e-150 535.0 442 66.5
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 9.1e-150 534.3 442 67.0
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 2.0e-149 533.1 442 66.3
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.5e-149 531.9 442 66.5
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 5.9e-149 531.6 447 65.5
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 5.9e-149 531.6 445 66.3
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 2.9e-148 529.3 442 65.6
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 1.1e-147 527.3 471 63.3
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.1e-147 527.3 452 68.8
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 1.0e-145 520.8 449 64.6
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 3.0e-145 519.2 449 64.6
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 3.0e-145 519.2 461 62.5
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 3.0e-145 519.2 442 65.4
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 3.9e-145 518.8 445 64.7
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 5.2e-145 518.5 445 64.0
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 2.6e-144 516.2 451 69.8
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 5.7e-144 515.0 447 64.4
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 9.7e-144 514.2 441 63.7
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 2.2e-143 513.1 447 63.8
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 4.8e-143 511.9 455 67.3
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 4.8e-143 511.9 445 63.6
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.4e-142 510.4 432 64.4
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 5.3e-142 508.4 442 67.9
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 9.1e-142 507.7 452 63.1
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 2.0e-141 506.5 450 63.8
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.5e-141 505.4 448 65.6
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 2.9e-140 502.7 444 62.6
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 2.9e-140 502.7 452 62.8
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 5.0e-140 501.9 444 68.7
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 5.0e-140 501.9 444 68.7
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 1.1e-139 500.7 452 63.1
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 1.5e-139 500.4 439 68.1
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 4.2e-139 498.8 449 63.7
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 4.2e-139 498.8 441 64.9
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 5.5e-139 498.4 449 63.0
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 9.4e-139 497.7 452 61.9
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 9.4e-139 497.7 445 61.3
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 1.2e-138 497.3 441 60.5
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 2.7e-138 496.1 447 66.2
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 2.7e-138 496.1 446 60.3
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 4.7e-138 495.4 446 63.0
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.4e-137 493.8 434 66.1
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 3.0e-137 492.7 441 60.1
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 4.0e-137 492.3 455 61.3
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 5.2e-137 491.9 441 59.9
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 6.8e-137 491.5 441 60.3
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 8.8e-137 491.1 443 63.4
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 2.0e-136 490.0 451 62.1
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 2.6e-136 489.6 446 61.7
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 3.4e-136 489.2 448 62.9
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 5.7e-136 488.4 446 67.0
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 7.5e-136 488.0 492 57.1
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 9.7e-136 487.6 443 60.9
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 2.2e-135 486.5 444 65.1
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 2.2e-135 486.5 444 61.9
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 6.3e-135 485.0 447 66.4
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 8.3e-135 484.6 455 60.0
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 8.3e-135 484.6 445 67.0
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 8.3e-135 484.6 441 62.8
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 1.1e-134 484.2 444 62.4
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 1.1e-134 484.2 444 65.1
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 4.5e-133 478.8 460 60.4
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 2.2e-132 476.5 455 60.4
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 6.5e-132 474.9 445 61.8
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 3.6e-130 469.2 445 60.9
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 4.7e-130 468.8 441 63.5
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 1.8e-129 466.8 499 55.7
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 2.3e-129 466.5 441 60.3
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 8.8e-129 464.5 441 58.7
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.2e-128 464.2 431 59.4
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 2.0e-128 463.4 434 67.3
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 2.6e-128 463.0 476 57.4
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 5.7e-128 461.8 460 60.2
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 6.3e-127 458.4 460 60.0
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 1.8e-126 456.8 443 58.9
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 7.0e-126 454.9 467 60.8
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 9.1e-126 454.5 433 63.3
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 1.0e-124 451.1 460 59.6
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 1.7e-124 450.3 443 58.7
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 2.9e-124 449.5 460 59.6
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 3.3e-123 446.0 442 63.1
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 2.1e-122 443.4 459 59.0
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 5.2e-121 438.7 447 58.2
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 8.9e-121 438.0 451 60.1
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 3.4e-120 436.0 452 58.6
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 4.4e-120 435.6 441 60.8
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 9.8e-120 434.5 447 57.3
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 2.8e-119 433.0 433 61.2
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 1.1e-115 421.0 444 58.6
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 2.0e-112 410.2 447 60.4
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 6.6e-108 395.2 447 51.5
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 5.6e-107 392.1 441 59.4
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 6.8e-105 385.2 380 57.6
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 1.5e-104 384.0 377 64.2
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 4.4e-104 382.5 450 54.0
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 9.8e-104 381.3 482 49.6
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 6.0e-101 372.1 442 56.1
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 1.3e-100 370.9 452 56.2
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 3.3e-99 366.3 315 61.6
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 5.2e-97 359.0 380 52.4
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 9.9e-96 354.8 376 62.2
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 1.1e-91 341.3 311 65.9
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 4.4e-88 329.3 487 45.6
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 1.9e-83 313.9 288 61.5
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 4.3e-83 312.8 434 48.6
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 2.6e-80 303.5 508 41.3
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 4.2e-78 296.2 292 59.9
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 9.3e-78 295.0 442 45.0
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 4.6e-69 266.2 442 43.9
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 5.1e-68 262.7 442 43.9
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 4.0e-65 253.1 219 63.0
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 3.4e-56 223.4 169 66.9
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 4.6e-53 213.0 356 43.5
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 5.7e-51 206.1 129 77.5
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 4.3e-43 179.9 299 40.1
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 4.3e-43 179.9 264 43.2
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 4.3e-43 179.9 264 43.2
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 9.7e-35 152.1 190 48.9
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 9.1e-33 145.6 296 39.2
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 1.5e-32 144.8 128 55.5
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 6.5e-31 139.4 74 86.5
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 3.2e-30 137.1 254 40.2
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.0e-28 132.1 75 84.0
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 3.0e-28 130.6 185 45.4
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 3.3e-27 127.1 140 57.9
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 1.7e-26 124.8 69 82.6
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 2.7e-24 117.5 68 79.4
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 3.5e-24 117.1 68 80.9
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 6.5e-23 112.8 91 68.1
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 6.1e-21 106.3 117 47.9
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 4.0e-20 103.6 66 72.7
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 1.3e-18 98.6 66 69.7
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 1.3e-18 98.6 66 69.7
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 3.2e-14 84.0 520 24.0
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 9.4e-14 82.4 56 75.0
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 8.3e-10 69.3 95 46.3
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 7.0e-09 66.2 73 52.1


User provided reference genes

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