Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0023200 Salix brachista HOM05D004854 ORTHO05D005854 1.0e-29 133.7 68 100.0
Potri.009G032600 Populus trichocarpa HOM05D004854 ORTHO05D005854 7.2e-28 127.5 68 95.6
Potri.003G010200 Populus trichocarpa HOM05D004854 ORTHO05D005854 4.8e-24 114.8 68 86.8
Sabra03G0005200 Salix brachista HOM05D004854 ORTHO05D005854 4.1e-23 111.7 67 83.6
Eucgr.C02261 Eucalyptus grandis HOM05D004854 ORTHO05D005854 3.5e-22 108.6 68 80.9
Eucgr.C02263 Eucalyptus grandis HOM05D004854 ORTHO05D005854 3.5e-22 108.6 68 80.9
Manes.06G021300 Manihot esculenta HOM05D004854 ORTHO05D005854 3.5e-22 108.6 68 77.9
Rhsim01G0120500 Rhododendron simsii HOM05D004854 ORTHO05D005854 3.5e-22 108.6 68 82.4
Dinv25401 Davidia involucrata HOM05D004854 ORTHO05D005854 5.9e-22 107.8 68 80.9
TAR625G0051 Trochodendron aralioides HOM05D004854 ORTHO05D005854 5.9e-22 107.8 68 79.4
CSS0022850 Camellia sinensis var. sinensis HOM05D004854 ORTHO05D005854 7.7e-22 107.5 68 80.9
PGR044G2628 Punica granatum HOM05D004854 ORTHO05D005854 7.7e-22 107.5 68 80.9
PGR109G0004 Punica granatum HOM05D004854 ORTHO05D005854 7.7e-22 107.5 68 80.9
Ciclev10002863m.g Citrus clementina HOM05D004854 ORTHO05D005854 1.7e-21 106.3 68 76.5
Eucgr.A01410 Eucalyptus grandis HOM05D004854 ORTHO05D005854 1.7e-21 106.3 68 79.4
Peaxi162Scf00324g00719 Petunia axillaris HOM05D004854 ORTHO05D005854 1.7e-21 106.3 68 80.9
CiPaw.08G034100 Carya illinoinensis HOM05D004854 ORTHO05D005854 2.9e-21 105.5 68 76.5
vmacro20836 Vaccinium macrocarpon HOM05D004854 ORTHO05D005854 2.9e-21 105.5 68 79.4
CDE05G0266 Ceratophyllum demersum HOM05D000177 ORTHO05D008165 5.0e-21 104.8 68 80.9
CDE05G2165 Ceratophyllum demersum HOM05D004854 ORTHO05D005854 5.0e-21 104.8 68 80.9
PGSC0003DMG400008513 Solanum tuberosum HOM05D004854 ORTHO05D005854 6.5e-21 104.4 68 77.9
Actinidia39348 Actinidia chinensis HOM05D000406 ORTHO05D003425 8.5e-21 104.0 68 77.9
Dinv26446 Davidia involucrata HOM05D004854 ORTHO05D005854 8.5e-21 104.0 68 77.9
Atru.chr12.1305 Acer truncatum HOM05D004854 ORTHO05D005854 1.1e-20 103.6 68 76.5
Nitab4.5_0000074g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 1.1e-20 103.6 68 77.9
Nitab4.5_0012849g0010 Nicotiana tabacum HOM05D004854 ORTHO05D005854 1.1e-20 103.6 68 77.9
THA.LOC104813509 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 1.1e-20 103.6 68 80.9
SGA_v2.0_scaffold21G09635 Striga asiatica HOM05D004854 ORTHO05D005854 1.5e-20 103.2 68 77.9
AL8G33260 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 1.9e-20 102.8 68 76.5
BcaC03g14166 Brassica carinata HOM05D004854 ORTHO05D005854 1.9e-20 102.8 68 76.5
BcaC04g19981 Brassica carinata HOM05D004854 ORTHO05D005854 1.9e-20 102.8 68 76.5
CANSAT11G1984 Cannabis sativa HOM05D004854 ORTHO05D005854 1.9e-20 102.8 68 79.4
Solyc07g009330.4 Solanum lycopersicum HOM05D004854 ORTHO05D005854 1.9e-20 102.8 68 76.5
A02p08620 Brassica napus HOM05D004854 ORTHO05D005854 2.5e-20 102.4 68 76.5
Dinv25400 Davidia involucrata HOM05D004854 ORTHO05D005854 2.5e-20 102.4 67 76.1
QL11p004841 Quercus lobata HOM05D004854 ORTHO05D005854 2.5e-20 102.4 68 76.5
DCAR_003035 Daucus carota HOM05D004854 ORTHO05D005854 3.2e-20 102.1 68 73.5
Gohir.A05G003400 Gossypium hirsutum HOM05D004854 ORTHO05D005854 3.2e-20 102.1 68 76.5
Gohir.D05G003800 Gossypium hirsutum HOM05D004854 ORTHO05D005854 3.2e-20 102.1 68 76.5
Gorai.009G003400 Gossypium raimondii HOM05D004854 ORTHO05D005854 3.2e-20 102.1 68 76.5
MBI13_g31550_MAGBIO Magnolia biondii HOM05D004854 ORTHO05D005854 3.2e-20 102.1 68 76.5
Actinidia29956 Actinidia chinensis HOM05D004854 ORTHO05D005854 4.2e-20 101.7 68 76.5
Oeu064534.1 Olea europaea HOM05D004854 ORTHO05D005854 4.2e-20 101.7 68 75.0
C02p14390 Brassica napus HOM05D004854 ORTHO05D005854 5.5e-20 101.3 67 76.1
BolC2t07563H Brassica oleracea HOM05D004854 ORTHO05D005854 5.5e-20 101.3 67 76.1
BolC9t57762H Brassica oleracea HOM05D004854 ORTHO05D005854 5.5e-20 101.3 67 76.1
BraA02t05931Z Brassica rapa HOM05D004854 ORTHO05D005854 5.5e-20 101.3 68 75.0
BraA10t43555Z Brassica rapa HOM05D004854 ORTHO05D005854 5.5e-20 101.3 67 76.1
Sopen07g005080 Solanum pennellii HOM05D004854 ORTHO05D005854 5.5e-20 101.3 68 75.0
BcaB05g22334 Brassica carinata HOM05D004854 ORTHO05D005854 7.2e-20 100.9 68 75.0
CsaV3_2G008580 Cucumis sativus L. HOM05D004854 ORTHO05D005854 7.2e-20 100.9 68 77.9
Sp6g19020 Schrenkiella parvula HOM05D004854 ORTHO05D005854 7.2e-20 100.9 68 76.5
TWI38G2070 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 7.2e-20 100.9 68 73.5
ClCG11G011930 Citrullus lanatus HOM05D004854 ORTHO05D005854 9.4e-20 100.5 68 76.5
Sp7g23910 Schrenkiella parvula HOM05D004854 ORTHO05D005854 1.2e-19 100.1 68 77.9
TWI18G0069 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 1.2e-19 100.1 68 73.5
CAN.G86.2 Capsicum annuum HOM05D004854 ORTHO05D005854 1.6e-19 99.8 68 75.0
MELO3C003999.2 Cucumis melo HOM05D004854 ORTHO05D005854 1.6e-19 99.8 68 76.5
AL7G27120 Arabidopsis lyrata HOM05D004854 ORTHO05D005854 2.1e-19 99.4 68 75.0
THA.LOC104811780 Tarenaya hassleriana HOM05D004854 ORTHO05D005854 2.1e-19 99.4 68 76.5
GSVIVG01010910001 Vitis vinifera HOM05D004854 ORTHO05D005854 2.1e-19 99.4 68 75.0
A10p14720 Brassica napus HOM05D004854 ORTHO05D005854 2.7e-19 99.0 67 74.6
C09p49130 Brassica napus HOM05D004854 ORTHO05D005854 2.7e-19 99.0 67 74.6
Migut.J00819 Erythranthe guttata HOM05D004854 ORTHO05D005854 2.7e-19 99.0 68 75.0
Cpa.g.sc95.32 Carica papaya HOM05D004854 ORTHO05D005854 3.6e-19 98.6 68 73.5
Thhalv10026301m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 3.6e-19 98.6 68 76.5
Glyma.08G131500 Glycine max HOM05D004854 ORTHO05D005854 3.6e-19 98.6 68 77.9
MSTRG.26532 Avicennia marina HOM05D004854 ORTHO05D005854 4.7e-19 98.2 68 75.0
Cfa013427 Carpinus fangiana HOM05D004854 ORTHO05D005854 4.7e-19 98.2 68 73.5
Duzib150G0904 Durio zibethinus HOM05D004854 ORTHO05D005854 4.7e-19 98.2 68 73.5
Oeu044703.1 Olea europaea HOM05D004854 ORTHO05D005854 4.7e-19 98.2 68 75.0
SGA_v2.0_scaffold41G15867 Striga asiatica HOM05D004854 ORTHO05D005854 4.7e-19 98.2 68 73.5
AT5G57290 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 8.0e-19 97.4 66 74.2
Sc26g0002890 Simmondsia chinensis HOM05D004854 ORTHO05D005854 8.0e-19 97.4 68 72.1
AT4G25890 Arabidopsis thaliana HOM05D004854 ORTHO05D005854 1.0e-18 97.1 68 73.5
MD13G1245200 Malus domestica HOM05D004854 ORTHO05D005854 1.0e-18 97.1 68 75.0
Oeu044701.1 Olea europaea HOM05D004854 ORTHO05D005854 1.0e-18 97.1 68 73.5
Sed0005886 Sechium edule HOM05D004854 ORTHO05D005854 1.0e-18 97.1 68 73.5
MSTRG.19386 Avicennia marina HOM05D004854 ORTHO05D005854 1.4e-18 96.7 68 76.5
Cc06_g22110 Coffea canephora HOM05D004854 ORTHO05D005854 1.4e-18 96.7 68 75.0
MD16G1253100 Malus domestica HOM05D004854 ORTHO05D005854 1.4e-18 96.7 68 75.0
Oeu000974.1 Olea europaea HOM05D004854 ORTHO05D005854 1.4e-18 96.7 68 73.5
Prupe.1G079500 Prunus persica HOM05D004854 ORTHO05D005854 1.4e-18 96.7 68 75.0
TWI38G1790 Tripterygium wilfordii HOM05D004854 ORTHO05D005854 1.4e-18 96.7 68 70.6
CARHR233360 Cardamine hirsuta HOM05D004854 ORTHO05D005854 1.8e-18 96.3 68 75.0
Glyma.05G174300 Glycine max HOM05D004854 ORTHO05D005854 1.8e-18 96.3 68 76.5
Carub.0008s1780 Capsella rubella HOM05D004854 ORTHO05D005854 2.3e-18 95.9 68 70.6
Sed0001835 Sechium edule HOM05D004854 ORTHO05D005854 2.3e-18 95.9 68 73.5
Ca_17781_v3 Cicer arietinum L. HOM05D004854 ORTHO05D005854 3.0e-18 95.5 68 76.5
Psat7g058720 Pisum sativum HOM05D004854 ORTHO05D005854 4.0e-18 95.1 68 75.0
Carub.0007s1506 Capsella rubella HOM05D004854 ORTHO05D005854 5.2e-18 94.7 68 73.5
Thhalv10015037m.g Eutrema salsugineum HOM05D004854 ORTHO05D005854 5.2e-18 94.7 68 70.6
PGR142G3975 Punica granatum HOM05D004854 ORTHO05D005854 6.8e-18 94.4 68 70.6
SHI02877 Sapria himalayana HOM05D004681 ORTHO05D005541 6.8e-18 94.4 67 73.1
CARHR271090 Cardamine hirsuta HOM05D004854 ORTHO05D005854 8.8e-18 94.0 68 72.1
TAR636G3485 Trochodendron aralioides HOM05D004854 ORTHO05D005854 8.8e-18 94.0 61 77.0
unitig_899.g15189 Utricularia gibba HOM05D004854 ORTHO05D005854 8.8e-18 94.0 68 73.5
Thecc.09G180300 Theobroma cacao HOM05D004854 ORTHO05D005854 1.2e-17 93.6 68 70.6
Aa31LG3G13170 Aethionema arabicum HOM05D004854 ORTHO05D005854 1.5e-17 93.2 68 69.1
Phvul.002G259300 Phaseolus vulgaris HOM05D004854 ORTHO05D005854 1.5e-17 93.2 68 70.6
FvH4_4g07630 Fragaria vesca HOM05D004854 ORTHO05D005854 2.0e-17 92.8 68 72.1
FAN07G2001 Fragaria x ananassa HOM05D004854 ORTHO05D005854 2.0e-17 92.8 68 72.1
FAN12G2445 Fragaria x ananassa HOM05D004854 ORTHO05D005854 2.0e-17 92.8 68 72.1
FAN17G2475 Fragaria x ananassa HOM05D004854 ORTHO05D005854 2.0e-17 92.8 68 72.1
Lalb_Chr07g0185421 Lupinus albus HOM05D004854 ORTHO05D005854 2.0e-17 92.8 68 73.5
PSO423G0276 Papaver somniferum HOM05D004854 ORTHO05D005854 2.0e-17 92.8 68 69.1
VMungo0251G0447 Vigna mungo HOM05D004854 ORTHO05D005854 2.0e-17 92.8 68 69.1
ECA247G3496 Erigeron canadensis HOM05D004854 ORTHO05D005854 3.4e-17 92.0 68 69.1
Lj4g0022898 Lotus japonicus HOM05D004854 ORTHO05D005854 3.4e-17 92.0 68 72.1
Medtr8g089790 Medicago truncatula HOM05D004854 ORTHO05D005854 3.4e-17 92.0 68 72.1
Os06g0701400 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 3.4e-17 92.0 68 66.2
BcaB08g36089 Brassica carinata HOM05D004854 ORTHO05D005854 4.4e-17 91.7 68 67.6
PSO596G0050 Papaver somniferum HOM05D004854 ORTHO05D005854 5.7e-17 91.3 68 66.2
arahy.Tifrunner.gnm1.ann1.9B8HPN Arachis hypogaea HOM05D004854 ORTHO05D005854 7.5e-17 90.9 68 73.5
arahy.Tifrunner.gnm1.ann1.P9UE85 Arachis hypogaea HOM05D004854 ORTHO05D005854 7.5e-17 90.9 68 73.5
FAN22G0664 Fragaria x ananassa HOM05D004854 ORTHO05D005854 7.5e-17 90.9 68 70.6
Lsat_1_v5_gn_9_31040 Lactuca sativa HOM05D004854 ORTHO05D005854 7.5e-17 90.9 68 66.2
RcHm_v2.0_Chr4g0400241 Rosa chinensis HOM05D004854 ORTHO05D005854 7.5e-17 90.9 68 70.6
SalBow5G3614 Salvia bowleyana HOM05D004854 ORTHO05D005854 7.5e-17 90.9 68 72.1
arahy.Tifrunner.gnm1.ann1.AP25S4 Arachis hypogaea HOM05D004854 ORTHO05D005854 9.8e-17 90.5 68 70.6
arahy.Tifrunner.gnm1.ann1.XNR1AK Arachis hypogaea HOM05D004854 ORTHO05D005854 9.8e-17 90.5 68 69.1
HanXRQChr10g0297881 Helianthus annuus HOM05D004854 ORTHO05D005854 9.8e-17 90.5 68 67.6
Os01g0231700 Oryza sativa ssp. japonica HOM05D004854 ORTHO05D005854 9.8e-17 90.5 68 64.7
Ah.05g168230 Amaranthus hybridus HOM05D004854 ORTHO05D005854 1.3e-16 90.1 68 70.6
Migut.L01900 Erythranthe guttata HOM05D004854 ORTHO05D005854 1.7e-16 89.7 62 72.6
Ah.16g108570 Amaranthus hybridus HOM05D004854 ORTHO05D005854 2.2e-16 89.4 68 70.6
AUR62034880 Chenopodium quinoa HOM05D004854 ORTHO05D005854 2.8e-16 89.0 68 69.1
Zm00001eb226990 Zea mays HOM05D004854 ORTHO05D005854 2.8e-16 89.0 68 67.6
ATR0626G247 Amborella trichopoda HOM05D004854 ORTHO05D005854 4.8e-16 88.2 63 71.4
AUR62026626 Chenopodium quinoa HOM05D004854 ORTHO05D005854 4.8e-16 88.2 68 69.1
Lalb_Chr13g0295841 Lupinus albus HOM05D004854 ORTHO05D005854 4.8e-16 88.2 68 69.1
SEGI_03932 Sequoiadendron giganteum HOM05D004854 ORTHO05D005854 8.3e-16 87.4 68 64.7
Zm00001eb272850 Zea mays HOM05D004854 ORTHO05D005854 8.3e-16 87.4 69 68.1
RcHm_v2.0_Chr1g0341131 Rosa chinensis HOM05D004854 ORTHO05D005854 1.4e-15 86.7 68 69.1
TPR.G6298 Trifolium pratense HOM05D004854 ORTHO05D005854 1.4e-15 86.7 68 67.6
arahy.Tifrunner.gnm1.ann1.P39ID1 Arachis hypogaea HOM05D004854 ORTHO05D005854 4.1e-15 85.1 68 69.1
Hund26676 Selenicereus undatus HOM05D004854 ORTHO05D005854 5.4e-15 84.7 68 61.8
Lj6g0003516 Lotus japonicus HOM05D004854 ORTHO05D005854 7.0e-15 84.3 68 63.2
PSO596G0067 Papaver somniferum HOM05D004854 ORTHO05D005854 2.7e-14 82.4 68 61.8
Thecc.01G294400 Theobroma cacao HOM05D004854 ORTHO05D005854 2.7e-14 82.4 68 61.8
arahy.Tifrunner.gnm1.ann1.90PU0B Arachis hypogaea HOM05D004854 ORTHO05D005854 5.9e-14 81.3 68 64.7
PSO423G0052 Papaver somniferum HOM05D004854 ORTHO05D005854 1.3e-13 80.1 68 60.3
HPP92_026146 Vanilla planifolia HOM05D003573 ORTHO05D004204 3.8e-13 78.6 64 64.1
SGA_v2.0_scaffold46G17340 Striga asiatica HOM05D004854 ORTHO05D005854 3.2e-12 75.5 68 61.8
Pp3c22_2920 Physcomitrium patens HOM05D004854 ORTHO05D005854 1.2e-11 73.6 69 59.4
C03p15060 Brassica napus HOM05D004854 ORTHO05D005854 8.0e-11 70.9 56 71.4
Nn2g12744 Nelumbo nucifera HOM05D004854 ORTHO05D005854 1.8e-10 69.7 47 72.3
Pp3c21_16160 Physcomitrium patens HOM05D004854 ORTHO05D005854 1.8e-10 69.7 69 55.1
Mapoly0006s0174 Marchantia polymorpha HOM05D004854 ORTHO05D005854 6.8e-10 67.8 69 53.6
arahy.Tifrunner.gnm1.ann1.63P7R9 Arachis hypogaea HOM05D000970 ORTHO05D000788 8.8e-10 67.4 67 61.2
BolC3t13948H Brassica oleracea HOM05D004854 ORTHO05D005854 8.8e-10 67.4 55 69.1
Duzib170G0267 Durio zibethinus HOM05D004854 ORTHO05D005854 3.4e-09 65.5 43 74.4
SMO172G0233 Selaginella moellendorffii HOM05D004854 ORTHO05D005854 4.9e-08 61.6 68 47.1
COL.COLO4_25466 Corchorus olitorius HOM05D004854 ORTHO05D005854 1.1e-07 60.5 43 67.4
Duzib168G1583 Durio zibethinus HOM05D004854 ORTHO05D005854 1.1e-07 60.5 47 63.8


User provided reference genes

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