Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0015000 Salix brachista HOM05D002030 ORTHO05D004391 6.1e-42 173.7 87 100.0
Lj9A621G49 Lonicera japonica HOM05D002030 ORTHO05D004391 4.1e-30 134.4 98 72.4
Potri.001G230500 Populus trichocarpa HOM05D002030 ORTHO05D004391 2.5e-27 125.2 136 54.4
Sabra16G0138000 Salix brachista HOM05D002030 ORTHO05D004391 4.3e-27 124.4 136 54.4
PGR044G1446 Punica granatum HOM05D002030 ORTHO05D004391 1.2e-26 122.9 136 52.9
Cpa.g.sc189.5 Carica papaya HOM05D002030 ORTHO05D004391 1.6e-26 122.5 136 52.9
Haze_03285 Corylus avellana HOM05D002030 ORTHO05D004391 1.6e-26 122.5 136 52.9
COL.COLO4_26822 Corchorus olitorius HOM05D002030 ORTHO05D004391 3.6e-26 121.3 136 52.2
Cfa010689 Carpinus fangiana HOM05D002030 ORTHO05D004391 6.2e-26 120.6 136 52.2
ClCG09G003730 Citrullus lanatus HOM05D002030 ORTHO05D004391 6.2e-26 120.6 136 52.2
CsaV3_7G031480 Cucumis sativus L. HOM05D002030 ORTHO05D004391 6.2e-26 120.6 136 52.2
MD02G1319300 Malus domestica HOM05D002030 ORTHO05D004391 8.1e-26 120.2 136 52.2
Prupe.2G002900 Prunus persica HOM05D002030 ORTHO05D004391 8.1e-26 120.2 136 52.2
Sc02g0003780 Simmondsia chinensis HOM05D002030 ORTHO05D004391 8.1e-26 120.2 136 51.5
MELO3C023506.2 Cucumis melo HOM05D002030 ORTHO05D004391 1.1e-25 119.8 136 51.5
CiPaw.16G066900 Carya illinoinensis HOM05D002030 ORTHO05D004391 1.4e-25 119.4 136 51.5
SGA_v2.0_scaffold4G02232 Striga asiatica HOM05D002030 ORTHO05D004391 1.8e-25 119.0 136 51.5
CAN.G129.46 Capsicum annuum HOM05D002030 ORTHO05D004391 2.3e-25 118.6 136 51.5
Sed0004903 Sechium edule HOM05D002030 ORTHO05D004391 2.3e-25 118.6 136 50.7
Thecc.01G416600 Theobroma cacao HOM05D002030 ORTHO05D004391 2.3e-25 118.6 136 52.2
MSTRG.17066 Avicennia marina HOM05D002030 ORTHO05D004391 3.1e-25 118.2 136 51.5
Ciclev10031423m.g Citrus clementina HOM05D002030 ORTHO05D004391 3.1e-25 118.2 136 50.7
HanXRQChr01g0018081 Helianthus annuus HOM05D002030 ORTHO05D004391 3.1e-25 118.2 136 50.7
PGSC0003DMG400028982 Solanum tuberosum HOM05D002030 ORTHO05D004391 3.1e-25 118.2 136 50.0
Actinidia21583 Actinidia chinensis HOM05D002030 ORTHO05D004391 4.0e-25 117.9 116 57.8
QL04p001335 Quercus lobata HOM05D002030 ORTHO05D004391 4.0e-25 117.9 136 50.0
QL04p001534 Quercus lobata HOM05D002030 ORTHO05D004391 4.0e-25 117.9 136 50.0
SalBow5G3889 Salvia bowleyana HOM05D002030 ORTHO05D004391 4.0e-25 117.9 136 51.5
Sed0002541 Sechium edule HOM05D002030 ORTHO05D026400 4.0e-25 117.9 136 50.7
MSTRG.4998 Avicennia marina HOM05D002030 ORTHO05D004391 5.2e-25 117.5 136 50.7
TWI09G1279 Tripterygium wilfordii HOM05D002030 ORTHO05D004391 5.2e-25 117.5 136 51.5
TWI73G0973 Tripterygium wilfordii HOM05D002030 ORTHO05D004391 5.2e-25 117.5 136 52.2
unitig_61.g26437 Utricularia gibba HOM05D002030 ORTHO05D004391 5.2e-25 117.5 136 50.7
Cc02_g26940 Coffea canephora HOM05D002030 ORTHO05D004391 6.8e-25 117.1 136 50.0
MBI04_g33965_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D004391 6.8e-25 117.1 136 50.0
Gohir.A05G160100 Gossypium hirsutum HOM05D002030 ORTHO05D004391 8.9e-25 116.7 136 51.5
Gohir.D05G162800 Gossypium hirsutum HOM05D002030 ORTHO05D004391 8.9e-25 116.7 136 51.5
Gorai.009G167800 Gossypium raimondii HOM05D002030 ORTHO05D004391 8.9e-25 116.7 136 51.5
Sopen01g033350 Solanum pennellii HOM05D002030 ORTHO05D004391 8.9e-25 116.7 136 49.3
vmacro13609 Vaccinium macrocarpon HOM05D002030 ORTHO05D004391 8.9e-25 116.7 136 51.5
CANSAT11G1376 Cannabis sativa HOM05D002030 ORTHO05D004391 1.2e-24 116.3 136 50.0
ECA248G2977 Erigeron canadensis HOM05D002030 ORTHO05D004391 1.2e-24 116.3 136 50.0
MD00G1055300 Malus domestica HOM05D002030 ORTHO05D004391 1.2e-24 116.3 136 51.5
Peaxi162Scf00402g00612 Petunia axillaris HOM05D002030 ORTHO05D004391 1.2e-24 116.3 136 50.0
THA.LOC104817150 Tarenaya hassleriana HOM05D002030 ORTHO05D004391 1.5e-24 115.9 136 50.7
CSS0014563 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D004391 2.0e-24 115.5 136 50.0
AUR62000179 Chenopodium quinoa HOM05D002030 ORTHO05D007413 2.0e-24 115.5 136 50.0
Dinv43938 Davidia involucrata HOM05D002030 ORTHO05D004391 2.0e-24 115.5 136 50.7
Duzib168G0303 Durio zibethinus HOM05D002030 ORTHO05D004391 2.0e-24 115.5 136 50.7
Rhsim07G0049800 Rhododendron simsii HOM05D002030 ORTHO05D004391 2.0e-24 115.5 136 50.7
Lsat_1_v5_gn_1_87220 Lactuca sativa HOM05D002030 ORTHO05D004391 2.6e-24 115.2 136 49.3
Manes.07G000500 Manihot esculenta HOM05D002030 ORTHO05D004391 2.6e-24 115.2 136 50.0
Nitab4.5_0000468g0060 Nicotiana tabacum HOM05D002030 ORTHO05D004391 2.6e-24 115.2 136 50.0
AUR62039829 Chenopodium quinoa HOM05D002030 ORTHO05D004391 3.4e-24 114.8 136 50.0
Migut.N01657 Erythranthe guttata HOM05D002030 ORTHO05D004391 3.4e-24 114.8 136 50.0
FvH4_7g00080 Fragaria vesca HOM05D002030 ORTHO05D004391 3.4e-24 114.8 136 50.7
FAN01G0191 Fragaria x ananassa HOM05D002030 ORTHO05D004391 3.4e-24 114.8 136 50.7
FAN01G3098 Fragaria x ananassa HOM05D002030 ORTHO05D004391 3.4e-24 114.8 136 50.7
FAN03G0965 Fragaria x ananassa HOM05D002030 ORTHO05D004391 3.4e-24 114.8 136 50.7
FAN06G4832 Fragaria x ananassa HOM05D002030 ORTHO05D004391 3.4e-24 114.8 136 50.7
FAN10G1580 Fragaria x ananassa HOM05D002030 ORTHO05D004391 3.4e-24 114.8 136 50.7
Aqoxy2G00078 Aquilegia oxysepala HOM05D002030 ORTHO05D004391 4.4e-24 114.4 136 49.3
DCAR_029593 Daucus carota HOM05D002030 ORTHO05D004391 4.4e-24 114.4 136 48.5
GSVIVG01001358001 Vitis vinifera HOM05D002030 ORTHO05D004391 4.4e-24 114.4 136 51.5
Actinidia15851 Actinidia chinensis HOM05D002030 ORTHO05D004391 5.8e-24 114.0 136 50.0
ECA234G1190 Erigeron canadensis HOM05D002030 ORTHO05D004391 5.8e-24 114.0 136 49.3
RcHm_v2.0_Chr1g0313271 Rosa chinensis HOM05D002030 ORTHO05D004391 5.8e-24 114.0 136 50.7
Sed0005598 Sechium edule HOM05D002030 ORTHO05D004391 5.8e-24 114.0 136 49.3
Atru.chr11.2703 Acer truncatum HOM05D002030 ORTHO05D004391 7.5e-24 113.6 136 50.7
CSS0004924 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D004391 7.5e-24 113.6 136 50.0
CSS0020062 Camellia sinensis var. sinensis HOM05D002030 ORTHO05D004391 7.5e-24 113.6 136 50.0
Oeu032787.1 Olea europaea HOM05D002030 ORTHO05D004391 7.5e-24 113.6 136 50.0
AUR62016372 Chenopodium quinoa HOM05D002030 ORTHO05D004391 9.9e-24 113.2 136 48.5
Solyc01g073740.4 Solanum lycopersicum HOM05D002030 ORTHO05D004391 1.3e-23 112.8 140 47.1
Manes.10G152000 Manihot esculenta HOM05D002030 ORTHO05D004391 1.7e-23 112.5 136 48.5
EL10Ac4g10124 Beta vulgaris HOM05D002030 ORTHO05D004391 2.2e-23 112.1 136 48.5
EL10Ac4g10165 Beta vulgaris HOM05D002030 ORTHO05D004391 2.2e-23 112.1 136 48.5
MBI01_g01369_MAGBIO Magnolia biondii HOM05D002030 ORTHO05D004391 2.9e-23 111.7 136 49.3
Nn2g15681 Nelumbo nucifera HOM05D002030 ORTHO05D004391 2.9e-23 111.7 136 48.5
PSO339G0144 Papaver somniferum HOM05D002030 ORTHO05D004391 2.9e-23 111.7 136 48.5
PSO384G2681 Papaver somniferum HOM05D002030 ORTHO05D004391 2.9e-23 111.7 136 48.5
SGA_v2.0_scaffold95G28770 Striga asiatica HOM05D002030 ORTHO05D004391 3.7e-23 111.3 61 85.2
Dinv43498 Davidia involucrata HOM05D002030 ORTHO05D004391 4.9e-23 110.9 136 49.3
Aa31LG1G25930 Aethionema arabicum HOM05D002030 ORTHO05D004391 6.4e-23 110.5 136 48.5
AL4G43330 Arabidopsis lyrata HOM05D002030 ORTHO05D004391 6.4e-23 110.5 136 48.5
AT2G44350 Arabidopsis thaliana HOM05D002030 ORTHO05D004391 6.4e-23 110.5 136 48.5
BcaB06g29369 Brassica carinata HOM05D002030 ORTHO05D004391 6.4e-23 110.5 136 48.5
A03p24780 Brassica napus HOM05D002030 ORTHO05D004391 6.4e-23 110.5 136 48.5
A04p33270 Brassica napus HOM05D002030 ORTHO05D004391 6.4e-23 110.5 136 48.5
C03p29550 Brassica napus HOM05D002030 ORTHO05D004391 6.4e-23 110.5 136 48.5
C04p70970 Brassica napus HOM05D002030 ORTHO05D004391 6.4e-23 110.5 136 48.5
BolC4t28600H Brassica oleracea HOM05D002030 ORTHO05D004391 6.4e-23 110.5 136 48.5
BraA04t18788Z Brassica rapa HOM05D002030 ORTHO05D004391 6.4e-23 110.5 136 48.5
Thhalv10001384m.g Eutrema salsugineum HOM05D002030 ORTHO05D004391 6.4e-23 110.5 136 48.5
Sp4g26410 Schrenkiella parvula HOM05D002030 ORTHO05D004391 6.4e-23 110.5 136 48.5
TAR623G1248 Trochodendron aralioides HOM05D002030 ORTHO05D004391 6.4e-23 110.5 136 48.5
Lsat_1_v5_gn_4_46541 Lactuca sativa HOM05D002030 ORTHO05D004391 8.3e-23 110.2 136 48.5
Hma1.2p1_0293F.1_g116260 Hydrangea macrophylla HOM05D002030 ORTHO05D004391 1.1e-22 109.8 136 48.5
BraA03t11685Z Brassica rapa HOM05D002030 ORTHO05D004391 1.4e-22 109.4 136 47.8
Aa31LG10G14260 Aethionema arabicum HOM05D002030 ORTHO05D004391 1.9e-22 109.0 136 47.8
Carub.0004s2693 Capsella rubella HOM05D002030 ORTHO05D004391 1.9e-22 109.0 136 48.5
CARHR139510 Cardamine hirsuta HOM05D002030 ORTHO05D004391 1.9e-22 109.0 136 47.8
SEGI_39166 Sequoiadendron giganteum HOM05D002030 ORTHO05D004391 2.4e-22 108.6 136 47.1
HPP92_022742 Vanilla planifolia HOM05D002030 ORTHO05D004391 2.4e-22 108.6 136 46.3
BcaB01g03317 Brassica carinata HOM05D002030 ORTHO05D004391 3.2e-22 108.2 136 47.8
HanXRQChr16g0520361 Helianthus annuus HOM05D002030 ORTHO05D004391 3.2e-22 108.2 90 64.4
AL5G42300 Arabidopsis lyrata HOM05D002030 ORTHO05D004391 5.4e-22 107.5 137 48.9
BcaC01g05172 Brassica carinata HOM05D002030 ORTHO05D004391 5.4e-22 107.5 136 47.8
BolC3t15304H Brassica oleracea HOM05D002030 ORTHO05D004391 5.4e-22 107.5 136 47.8
TAR633G1299 Trochodendron aralioides HOM05D002030 ORTHO05D004391 5.4e-22 107.5 136 47.1
ATR0006G067 Amborella trichopoda HOM05D002030 ORTHO05D004391 7.1e-22 107.1 136 47.1
Hma1.2p1_0505F.1_g168140 Hydrangea macrophylla HOM05D002030 ORTHO05D004391 7.1e-22 107.1 136 47.8
Oeu024931.4 Olea europaea HOM05D002030 ORTHO05D004391 7.1e-22 107.1 90 64.4
AUR62011552 Chenopodium quinoa HOM05D002030 ORTHO05D004391 9.2e-22 106.7 61 80.3
Os11g0538900 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D004391 9.2e-22 106.7 136 46.3
Os02g0194100 Oryza sativa ssp. japonica HOM05D002030 ORTHO05D004391 1.6e-21 105.9 136 46.3
Carub.0005s2683 Capsella rubella HOM05D002030 ORTHO05D004391 2.1e-21 105.5 137 47.4
TPR.G16151 Trifolium pratense HOM05D002030 ORTHO05D004391 4.6e-21 104.4 61 75.4
Zm00001eb206100 Zea mays HOM05D002030 ORTHO05D004391 6.0e-21 104.0 136 44.9
Ca_02885_v3 Cicer arietinum L. HOM05D002030 ORTHO05D004391 7.8e-21 103.6 61 75.4
Ca_02887_v3 Cicer arietinum L. HOM05D002030 ORTHO05D004391 7.8e-21 103.6 61 75.4
Psat1g127120 Pisum sativum HOM05D002030 ORTHO05D004391 7.8e-21 103.6 61 73.8
A04p01870 Brassica napus HOM05D002030 ORTHO05D004391 1.7e-20 102.4 137 45.3
C04p32630 Brassica napus HOM05D002030 ORTHO05D004391 1.7e-20 102.4 137 45.3
BolC4t24830H Brassica oleracea HOM05D002030 ORTHO05D004391 1.7e-20 102.4 137 45.3
BraA04t15910Z Brassica rapa HOM05D002030 ORTHO05D004391 1.7e-20 102.4 137 45.3
HPP92_022773 Vanilla planifolia HOM05D002030 ORTHO05D004391 3.0e-20 101.7 90 60.0
Lj3g0024225 Lotus japonicus HOM05D002030 ORTHO05D004391 3.9e-20 101.3 61 75.4
Medtr2g061630 Medicago truncatula HOM05D002030 ORTHO05D004391 3.9e-20 101.3 61 73.8
arahy.Tifrunner.gnm1.ann1.PFQ45M Arachis hypogaea HOM05D002030 ORTHO05D004391 5.1e-20 100.9 90 58.9
arahy.Tifrunner.gnm1.ann1.X24NYN Arachis hypogaea HOM05D002030 ORTHO05D004391 5.1e-20 100.9 90 58.9
Thhalv10005966m.g Eutrema salsugineum HOM05D002030 ORTHO05D004391 5.1e-20 100.9 137 45.3
Oeu000987.1 Olea europaea HOM05D002030 ORTHO05D004391 5.1e-20 100.9 61 75.4
CDE07G1107 Ceratophyllum demersum HOM05D002030 ORTHO05D028682 6.6e-20 100.5 136 44.1
VMungo1080G0649 Vigna mungo HOM05D002030 ORTHO05D004391 6.6e-20 100.5 61 75.4
BcaC02g10111 Brassica carinata HOM05D002030 ORTHO05D004391 1.1e-19 99.8 91 59.3
vmacro14224 Vaccinium macrocarpon HOM05D002030 ORTHO05D004391 1.1e-19 99.8 59 81.4
Zm00001eb236450 Zea mays HOM05D002030 ORTHO05D004391 1.1e-19 99.8 136 44.1
BcaB02g08193 Brassica carinata HOM05D002030 ORTHO05D004391 1.5e-19 99.4 137 44.5
Glyma.08G157700 Glycine max HOM05D002030 ORTHO05D004391 1.5e-19 99.4 61 72.1
Glyma.15G268500 Glycine max HOM05D002030 ORTHO05D004391 1.5e-19 99.4 61 72.1
CARHR170410 Cardamine hirsuta HOM05D002030 ORTHO05D004391 1.9e-19 99.0 137 45.3
ATR0626G367 Amborella trichopoda HOM05D002030 ORTHO05D004391 5.6e-19 97.4 91 58.2
CDE06G2277 Ceratophyllum demersum HOM05D002030 ORTHO05D004391 5.6e-19 97.4 136 41.9
Lalb_Chr25g0283641 Lupinus albus HOM05D002030 ORTHO05D004391 5.6e-19 97.4 61 72.1
Phvul.005G041600 Phaseolus vulgaris HOM05D002030 ORTHO05D004391 5.6e-19 97.4 61 70.5
EL10Ac9g21933 Beta vulgaris HOM05D002030 ORTHO05D004391 7.3e-19 97.1 102 54.9
Lalb_Chr20g0108201 Lupinus albus HOM05D002030 ORTHO05D004391 1.2e-18 96.3 61 72.1
Eucgr.G03412 Eucalyptus grandis HOM05D002030 ORTHO05D004391 1.6e-18 95.9 136 43.4
SMO118G0428 Selaginella moellendorffii HOM05D002030 ORTHO05D004391 2.8e-18 95.1 136 41.2
Zm00001eb206090 Zea mays HOM05D002030 ORTHO05D004391 2.8e-18 95.1 136 41.9
Pp3c13_21410 Physcomitrium patens HOM05D002030 ORTHO05D004391 6.2e-18 94.0 136 41.2
Sp5g03110 Schrenkiella parvula HOM05D002030 ORTHO05D004391 1.4e-17 92.8 132 46.2
AagrBONN_evm.TU.Sc2ySwM_117.1175 Anthoceros agrestis HOM05D002030 ORTHO05D004391 1.8e-17 92.4 136 41.2
AagrBONN_evm.TU.Sc2ySwM_228.5639 Anthoceros agrestis HOM05D002030 ORTHO05D004391 6.8e-17 90.5 136 40.4
AT3G60100 Arabidopsis thaliana HOM05D002030 ORTHO05D004391 2.6e-16 88.6 55 80.0
Mapoly0216s0011 Marchantia polymorpha HOM05D002030 ORTHO05D004391 7.6e-16 87.0 58 65.5
Mapoly0383s0001 Marchantia polymorpha HOM05D002030 ORTHO05D004391 1.3e-15 86.3 136 39.0
Mapoly0200s0007 Marchantia polymorpha HOM05D002030 ORTHO05D004391 4.9e-15 84.3 58 63.8
Mapoly0063s0010 Marchantia polymorpha HOM05D002030 ORTHO05D004391 6.4e-15 84.0 136 38.2
Migut.O00475 Erythranthe guttata HOM05D002030 ORTHO05D004391 1.1e-14 83.2 113 45.1
AagrBONN_evm.TU.Sc2ySwM_344.3341 Anthoceros agrestis HOM05D002030 ORTHO05D004391 5.4e-14 80.9 61 60.7
Cre12.g514750 Chlamydomonas reinhardtii HOM05D002030 ORTHO05D004391 1.2e-13 79.7 136 37.5
CBR_g11008 Chara braunii HOM05D002030 ORTHO05D004391 3.9e-12 74.7 61 54.1
Cfa027058 Carpinus fangiana HOM05D002030 ORTHO05D004391 4.3e-11 71.2 61 47.5
MCO01G768 Micromonas commoda HOM05D002030 ORTHO05D004391 2.8e-10 68.6 57 47.4
Pp3c1_40030 Physcomitrium patens HOM05D002030 ORTHO05D004391 9.0e-09 63.5 125 34.4
BraA09t42224Z Brassica rapa HOM05D002030 ORTHO05D026400 1.2e-08 63.2 83 47.0
Cfa026498 Carpinus fangiana HOM05D002030 ORTHO05D004391 1.5e-08 62.8 61 47.5
Lsat_1_v5_gn_5_158281 Lactuca sativa HOM05D002030 ORTHO05D004391 1.5e-08 62.8 62 53.2
Actinidia05845 Actinidia chinensis HOM05D002030 ORTHO05D004391 2.0e-08 62.4 31 93.5
Haze_26913 Corylus avellana HOM05D002030 ORTHO05D004391 2.9e-07 58.5 61 39.3
Atru.chr1.1335 Acer truncatum HOM05D002030 ORTHO05D004391 7.1e-06 53.9 63 49.2
PRCOL_00005650 Prasinoderma coloniale HOM05D002030 ORTHO05D004391 7.1e-06 53.9 55 49.1


User provided reference genes

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