Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0144800 Salix brachista HOM05D004087 ORTHO05D004787 1.2e-123 446.8 276 100.0
Potri.008G190900 Populus trichocarpa HOM05D004087 ORTHO05D004787 2.9e-61 239.6 142 95.1
Manes.05G094600 Manihot esculenta HOM05D004087 ORTHO05D004787 5.1e-42 175.6 137 75.2
CiPaw.06G078300 Carya illinoinensis HOM05D004087 ORTHO05D004787 4.8e-40 169.1 146 69.9
COL.COLO4_36242 Corchorus olitorius HOM05D004087 ORTHO05D004787 4.5e-38 162.5 133 70.7
Cpa.g.sc5.304 Carica papaya HOM05D004087 ORTHO05D004787 2.2e-37 160.2 144 66.7
Haze_12080 Corylus avellana HOM05D004087 ORTHO05D004787 8.5e-37 158.3 135 71.1
Gohir.D04G136500 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.1e-36 157.9 122 72.1
Gorai.012G120300 Gossypium raimondii HOM05D004087 ORTHO05D004787 1.1e-36 157.9 122 72.1
GSVIVG01020122001 Vitis vinifera HOM05D004087 ORTHO05D004787 3.2e-36 156.4 162 62.3
Actinidia01168 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.2e-35 154.5 143 62.2
Glyma.01G039100 Glycine max HOM05D004087 ORTHO05D004787 1.6e-35 154.1 119 73.1
Phvul.002G079300 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 2.1e-35 153.7 129 69.0
Cfa009049 Carpinus fangiana HOM05D004087 ORTHO05D004787 3.6e-35 152.9 135 68.1
Ciclev10032809m.g Citrus clementina HOM05D004087 ORTHO05D004787 6.1e-35 152.1 132 65.9
Atru.chr11.1891 Acer truncatum HOM05D004087 ORTHO05D004787 1.4e-34 151.0 117 71.8
TAR622G0570 Trochodendron aralioides HOM05D004087 ORTHO05D004787 1.4e-34 151.0 137 66.4
VMungo1215G1106 Vigna mungo HOM05D004087 ORTHO05D004787 1.4e-34 151.0 156 59.0
Sabra18G0047200 Salix brachista HOM05D004087 ORTHO05D004787 3.9e-34 149.4 105 97.1
THA.LOC104822080 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 6.7e-34 148.7 143 63.6
TPR.G26706 Trifolium pratense HOM05D004087 ORTHO05D004787 6.7e-34 148.7 125 68.0
Hma1.2p1_0289F.1_g114450 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 3.3e-33 146.4 167 55.7
Medtr5g037230 Medicago truncatula HOM05D004087 ORTHO05D004787 7.4e-33 145.2 128 67.2
CAN.G300.5 Capsicum annuum HOM05D004087 ORTHO05D004787 1.7e-32 144.1 126 67.5
Lalb_Chr05g0217411 Lupinus albus HOM05D004087 ORTHO05D004787 2.8e-32 143.3 127 64.6
Peaxi162Scf00187g00617 Petunia axillaris HOM05D004087 ORTHO05D004787 2.8e-32 143.3 119 67.2
MBI01_g41231_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 4.8e-32 142.5 145 62.1
Eucgr.B02582 Eucalyptus grandis HOM05D004087 ORTHO05D004787 6.3e-32 142.1 131 63.4
Lj2g0011291 Lotus japonicus HOM05D004087 ORTHO05D004787 2.4e-31 140.2 130 63.8
Psat2g117160 Pisum sativum HOM05D004087 ORTHO05D004787 5.3e-31 139.0 126 64.3
Glyma.02G025600 Glycine max HOM05D004087 ORTHO05D004787 9.1e-31 138.3 119 67.2
PGR119G1273 Punica granatum HOM05D004087 ORTHO05D004787 2.6e-30 136.7 106 69.8
Sopen04g001140 Solanum pennellii HOM05D004087 ORTHO05D004787 3.5e-30 136.3 109 68.8
Nitab4.5_0000710g0070 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.7e-29 134.0 141 57.4
Solyc04g005120.3 Solanum lycopersicum HOM05D004087 ORTHO05D004787 1.7e-29 134.0 146 54.8
arahy.Tifrunner.gnm1.ann1.0DC02M Arachis hypogaea HOM05D004087 ORTHO05D004787 2.2e-29 133.7 98 76.5
arahy.Tifrunner.gnm1.ann1.F53DZL Arachis hypogaea HOM05D004087 ORTHO05D004787 2.2e-29 133.7 98 76.5
PSO591G0142 Papaver somniferum HOM05D004087 ORTHO05D004787 1.1e-28 131.3 108 67.6
PSO832G0995 Papaver somniferum HOM05D004087 ORTHO05D004787 1.4e-28 131.0 111 64.9
Aqoxy3G03190 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 1.9e-28 130.6 157 49.0
Rhsim12G0127500 Rhododendron simsii HOM05D004087 ORTHO05D004787 5.5e-28 129.0 121 62.8
Dinv24938 Davidia involucrata HOM05D004087 ORTHO05D004787 1.2e-27 127.9 95 74.7
BcaC08g46444 Brassica carinata HOM05D004087 ORTHO05D004787 2.7e-27 126.7 119 62.2
BolC6t39453H Brassica oleracea HOM05D004087 ORTHO05D004787 2.7e-27 126.7 119 62.2
BcaB03g14773 Brassica carinata HOM05D004087 ORTHO05D004787 3.3e-25 119.8 116 59.5
Thhalv10019201m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 3.3e-25 119.8 91 72.5
AL2G29180 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 7.4e-25 118.6 92 69.6
A07p36390 Brassica napus HOM05D004087 ORTHO05D004787 7.4e-25 118.6 94 68.1
C06p43810 Brassica napus HOM05D004087 ORTHO05D004787 9.7e-25 118.2 121 58.7
Sp5g25060 Schrenkiella parvula HOM05D004087 ORTHO05D004787 1.7e-24 117.5 92 69.6
AT1G69935 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 2.2e-24 117.1 92 68.5
BraA07t31211Z Brassica rapa HOM05D004087 ORTHO05D004787 4.8e-24 115.9 122 57.4
Carub.0002s1665 Capsella rubella HOM05D004087 ORTHO05D004787 4.8e-24 115.9 118 58.5
CARHR063040 Cardamine hirsuta HOM05D004087 ORTHO05D004787 3.1e-23 113.2 118 56.8
Duzib268G0252 Durio zibethinus HOM05D004087 ORTHO05D004787 8.5e-21 105.1 102 63.7
Eucgr.G01187 Eucalyptus grandis HOM05D004087 ORTHO05D004787 1.1e-20 104.8 137 48.9
CiPaw.05G021000 Carya illinoinensis HOM05D004087 ORTHO05D004787 1.9e-20 104.0 110 55.5
Aqoxy6G02440 Aquilegia oxysepala HOM05D004087 ORTHO05D004787 2.5e-20 103.6 111 50.5
TAR628G1056 Trochodendron aralioides HOM05D000194 ORTHO05D000069 5.5e-20 102.4 89 59.6
Atru.chr5.2274 Acer truncatum HOM05D004087 ORTHO05D004787 7.2e-20 102.1 91 60.4
Cc02_g20080 Coffea canephora HOM05D004087 ORTHO05D004787 9.4e-20 101.7 89 59.6
HanXRQChr17g0551501 Helianthus annuus HOM05D004087 ORTHO05D004787 9.4e-20 101.7 110 53.6
CANSAT25G1673 Cannabis sativa HOM05D004087 ORTHO05D004787 1.2e-19 101.3 95 57.9
Peaxi162Scf00016g03121 Petunia axillaris HOM05D004087 ORTHO05D004787 1.6e-19 100.9 110 52.7
Potri.001G289600 Populus trichocarpa HOM05D004087 ORTHO05D004787 2.1e-19 100.5 94 57.4
GSVIVG01037047001 Vitis vinifera HOM05D004087 ORTHO05D004787 2.1e-19 100.5 91 57.1
COL.COLO4_32481 Corchorus olitorius HOM05D004087 ORTHO05D004787 2.7e-19 100.1 112 51.8
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 2.7e-19 100.1 91 57.1
Nn5g30675 Nelumbo nucifera HOM05D004087 ORTHO05D004787 2.7e-19 100.1 91 59.3
Prupe.8G150800 Prunus persica HOM05D004087 ORTHO05D004787 2.7e-19 100.1 105 55.2
Glyma.01G241400 Glycine max HOM05D004087 ORTHO05D004787 3.6e-19 99.8 94 58.5
PGR042G2373 Punica granatum HOM05D004087 ORTHO05D004787 3.6e-19 99.8 137 46.7
Ah.01g007120 Amaranthus hybridus HOM05D004087 ORTHO05D004787 4.7e-19 99.4 111 51.4
Carub.0007s0665 Capsella rubella HOM05D004087 ORTHO05D004787 6.1e-19 99.0 111 50.5
Dinv09536 Davidia involucrata HOM05D004087 ORTHO05D004787 8.0e-19 98.6 96 54.2
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 8.0e-19 98.6 91 56.0
Oeu028917.1 Olea europaea HOM05D004087 ORTHO05D004787 8.0e-19 98.6 89 57.3
QL11p029242 Quercus lobata HOM05D004087 ORTHO05D004787 8.0e-19 98.6 110 50.9
PGSC0003DMG400025835 Solanum tuberosum HOM05D004087 ORTHO05D004787 8.0e-19 98.6 89 58.4
Hma1.2p1_0661F.1_g198070 Hydrangea macrophylla HOM05D004087 ORTHO05D004787 1.4e-18 97.8 145 42.8
Actinidia00355 Actinidia chinensis HOM05D004087 ORTHO05D004787 1.8e-18 97.4 89 57.3
ATR0739G081 Amborella trichopoda HOM05D004087 ORTHO05D004787 1.8e-18 97.4 92 55.4
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 1.8e-18 97.4 91 56.0
MBI16_g37623_MAGBIO Magnolia biondii HOM05D004087 ORTHO05D004787 1.8e-18 97.4 90 58.9
Nitab4.5_0000772g0090 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.8e-18 97.4 109 51.4
Solyc01g106810.4 Solanum lycopersicum HOM05D004087 ORTHO05D004787 1.8e-18 97.4 89 58.4
Sopen01g049120 Solanum pennellii HOM05D004087 ORTHO05D004787 1.8e-18 97.4 89 58.4
CSS0031122 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 2.3e-18 97.1 87 58.6
FvH4_2g03150 Fragaria vesca HOM05D004087 ORTHO05D004787 2.3e-18 97.1 89 57.3
FAN15G0324 Fragaria x ananassa HOM05D004087 ORTHO05D004787 2.3e-18 97.1 89 57.3
FAN20G2318 Fragaria x ananassa HOM05D004087 ORTHO05D004787 2.3e-18 97.1 89 57.3
Sc05g0005570 Simmondsia chinensis HOM05D004087 ORTHO05D004787 2.3e-18 97.1 133 48.1
THA.LOC104807209 Tarenaya hassleriana HOM05D004087 ORTHO05D004787 2.3e-18 97.1 133 47.4
AT4G33780 Arabidopsis thaliana HOM05D004087 ORTHO05D004787 3.0e-18 96.7 111 50.5
CARHR241870 Cardamine hirsuta HOM05D004087 ORTHO05D004787 3.0e-18 96.7 111 50.5
Ciclev10029333m.g Citrus clementina HOM05D004087 ORTHO05D004787 3.0e-18 96.7 87 59.8
Manes.10G087100 Manihot esculenta HOM05D004087 ORTHO05D004787 3.0e-18 96.7 89 56.2
Nn1g03866 Nelumbo nucifera HOM05D004087 ORTHO05D004787 3.0e-18 96.7 134 46.3
TWI59G0284 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 3.0e-18 96.7 111 52.3
Duzib132G0587 Durio zibethinus HOM05D004087 ORTHO05D004787 4.0e-18 96.3 87 58.6
RcHm_v2.0_Chr6g0248281 Rosa chinensis HOM05D004087 ORTHO05D004787 4.0e-18 96.3 91 54.9
Thecc.02G120300 Theobroma cacao HOM05D004087 ORTHO05D004787 4.0e-18 96.3 89 57.3
Migut.B00471 Erythranthe guttata HOM05D004087 ORTHO05D004787 5.2e-18 95.9 89 56.2
FAN27G0771 Fragaria x ananassa HOM05D004087 ORTHO05D004787 5.2e-18 95.9 89 56.2
ECA236G0105 Erigeron canadensis HOM05D004087 ORTHO05D004787 8.8e-18 95.1 85 61.2
FAN24G1045 Fragaria x ananassa HOM05D004087 ORTHO05D004787 8.8e-18 95.1 91 56.0
PSO017G3065 Papaver somniferum HOM05D004087 ORTHO05D004787 8.8e-18 95.1 113 46.9
Ca_28186_v3 Cicer arietinum L. HOM05D004087 ORTHO05D004787 1.2e-17 94.7 78 70.5
Lsat_1_v5_gn_7_84781 Lactuca sativa HOM05D004087 ORTHO05D004787 1.2e-17 94.7 118 50.8
AL7G17680 Arabidopsis lyrata HOM05D004087 ORTHO05D004787 1.5e-17 94.4 111 49.5
Cfa004696 Carpinus fangiana HOM05D004087 ORTHO05D004787 2.0e-17 94.0 165 39.4
Aa31sc355G20 Aethionema arabicum HOM05D004087 ORTHO05D004787 3.3e-17 93.2 89 55.1
BcaNung04672 Brassica carinata HOM05D004087 ORTHO05D004787 3.3e-17 93.2 91 54.9
Thhalv10026262m.g Eutrema salsugineum HOM05D004087 ORTHO05D004787 3.3e-17 93.2 111 49.5
PSO170G3120 Papaver somniferum HOM05D004087 ORTHO05D004787 4.4e-17 92.8 113 46.0
Hund06503 Selenicereus undatus HOM05D004087 ORTHO05D004787 4.4e-17 92.8 154 39.6
Hund06504 Selenicereus undatus HOM05D004087 ORTHO05D004787 5.7e-17 92.4 154 39.6
BcaC09g52189 Brassica carinata HOM05D000477 ORTHO05D000338 7.5e-17 92.0 91 53.8
C01p04920 Brassica napus HOM05D004087 ORTHO05D004787 7.5e-17 92.0 91 53.8
BolC1t00476H Brassica oleracea HOM05D004087 ORTHO05D004787 7.5e-17 92.0 91 53.8
BraA01t00439Z Brassica rapa HOM05D004087 ORTHO05D004787 7.5e-17 92.0 89 55.1
Phvul.002G050600 Phaseolus vulgaris HOM05D004087 ORTHO05D004787 7.5e-17 92.0 93 53.8
BcaNung02921 Brassica carinata HOM05D004087 ORTHO05D004787 9.7e-17 91.7 89 55.1
A03p62320 Brassica napus HOM05D004087 ORTHO05D004787 9.7e-17 91.7 89 55.1
C07p59880 Brassica napus HOM05D004087 ORTHO05D004787 9.7e-17 91.7 89 55.1
BolC7t46432H Brassica oleracea HOM05D004087 ORTHO05D004787 9.7e-17 91.7 89 55.1
BraA03t15307Z Brassica rapa HOM05D004087 ORTHO05D004787 9.7e-17 91.7 89 55.1
QL03p066700 Quercus lobata HOM05D004087 ORTHO05D004787 9.7e-17 91.7 67 76.1
Sp7g31520 Schrenkiella parvula HOM05D004087 ORTHO05D004787 9.7e-17 91.7 111 48.6
PGSC0003DMG400001914 Solanum tuberosum HOM05D000067 ORTHO05D000097 9.7e-17 91.7 147 43.5
CDE06G2321 Ceratophyllum demersum HOM05D001904 ORTHO05D001854 1.3e-16 91.3 121 46.3
CDE04G2047 Ceratophyllum demersum HOM05D004087 ORTHO05D004787 1.7e-16 90.9 119 47.1
ClCG02G007130 Citrullus lanatus HOM05D004087 ORTHO05D004787 1.7e-16 90.9 91 51.6
Nitab4.5_0009103g0030 Nicotiana tabacum HOM05D004087 ORTHO05D004787 1.7e-16 90.9 127 45.7
Sed0019763 Sechium edule HOM05D004087 ORTHO05D004787 2.2e-16 90.5 87 54.0
BcaNung04326 Brassica carinata HOM05D004087 ORTHO05D004787 2.8e-16 90.1 88 54.5
CsaV3_7G007690 Cucumis sativus L. HOM05D004087 ORTHO05D004787 2.8e-16 90.1 91 51.6
Zm00001eb009500 Zea mays HOM05D004087 ORTHO05D004787 3.1e-15 86.7 87 54.0
Sabra16G0181200 Salix brachista HOM05D004087 ORTHO05D004787 7.0e-15 85.5 117 45.3
TWI36G1524 Tripterygium wilfordii HOM05D004087 ORTHO05D004787 1.3e-13 81.3 92 53.3
MD05G1106700 Malus domestica HOM05D004087 ORTHO05D004787 2.2e-13 80.5 84 52.4
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 3.8e-13 79.7 99 48.5
vmacro16306 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 3.8e-13 79.7 74 62.2
BcaC03g14363 Brassica carinata HOM05D004087 ORTHO05D004787 3.2e-12 76.6 87 51.7
BolC2t07908H Brassica oleracea HOM05D004087 ORTHO05D004787 1.6e-11 74.3 72 56.9
DCAR_021942 Daucus carota HOM05D004087 ORTHO05D004787 8.0e-11 72.0 129 41.1
SalBow6G0931 Salvia bowleyana HOM05D004087 ORTHO05D004787 1.0e-10 71.6 82 46.3
SGA_v2.0_scaffold32G12983 Striga asiatica HOM05D004087 ORTHO05D004787 3.0e-10 70.1 69 52.2
AagrBONN_evm.TU.Sc2ySwM_344.3821 Anthoceros agrestis HOM05D004087 ORTHO05D004787 5.2e-10 69.3 100 39.0
Gohir.A04G096700 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.2e-09 68.2 55 65.5
MD10G1111500 Malus domestica HOM05D004087 ORTHO05D004787 9.8e-09 65.1 68 52.9
CSS0038746 Camellia sinensis var. sinensis HOM05D004087 ORTHO05D004787 1.3e-08 64.7 66 60.6
Gohir.A13G047950 Gossypium hirsutum HOM05D004087 ORTHO05D004787 1.3e-08 64.7 74 48.6
EL10Ac9g22175 Beta vulgaris HOM05D004087 ORTHO05D004787 1.7e-08 64.3 179 30.7
C02p17780 Brassica napus HOM05D004087 ORTHO05D004787 3.7e-08 63.2 71 49.3
VMungo1215G2093 Vigna mungo HOM05D004087 ORTHO05D004787 3.7e-08 63.2 81 45.7
A01p04540 Brassica napus HOM05D004087 ORTHO05D004787 1.1e-07 61.6 60 55.0
MELO3C018531.2 Cucumis melo HOM05D004087 ORTHO05D004787 1.4e-07 61.2 60 53.3
vmacro01944 Vaccinium macrocarpon HOM05D004087 ORTHO05D004787 1.6e-06 57.8 53 56.6
Nitab4.5_0013199g0010 Nicotiana tabacum HOM05D004087 ORTHO05D004787 2.7e-06 57.0 74 47.3
unitig_0.g632 Utricularia gibba HOM05D004087 ORTHO05D004787 2.7e-06 57.0 81 40.7
Mapoly0011s0173 Marchantia polymorpha HOM05D004087 ORTHO05D004787 5.9e-06 55.8 125 29.6


User provided reference genes

Program Settings