Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0123600 Salix brachista HOM05D007216 ORTHO05D009261 1.5e-161 572.8 289 100.0
Potri.008G161800 Populus trichocarpa HOM05D007216 ORTHO05D009261 2.1e-99 366.3 208 88.0
Potri.010G077000 Populus trichocarpa HOM05D007216 ORTHO05D009261 7.2e-71 271.6 208 71.2
Sabra10G0031800 Salix brachista HOM05D007216 ORTHO05D009261 1.6e-70 270.4 208 66.8
Manes.03G169100 Manihot esculenta HOM05D007216 ORTHO05D009261 4.1e-50 202.6 208 54.3
Thecc.04G245800 Theobroma cacao HOM05D007216 ORTHO05D009261 1.1e-42 177.9 206 47.1
QL06p015626 Quercus lobata HOM05D007216 ORTHO05D009261 2.7e-41 173.3 217 46.5
Cfa008380 Carpinus fangiana HOM05D007216 ORTHO05D009261 4.5e-41 172.6 204 48.0
Duzib212G0514 Durio zibethinus HOM05D007216 ORTHO05D009261 7.8e-41 171.8 209 45.9
Duzib151G0820 Durio zibethinus HOM05D007216 ORTHO05D009261 2.3e-40 170.2 207 45.4
Duzib052G0756 Durio zibethinus HOM05D007216 ORTHO05D009261 2.9e-40 169.9 209 46.4
Atru.chr4.2233 Acer truncatum HOM05D007216 ORTHO05D009261 3.9e-40 169.5 209 46.9
CiPaw.01G190600 Carya illinoinensis HOM05D007216 ORTHO05D009261 3.9e-40 169.5 211 47.4
Peaxi162Scf00813g00118 Petunia axillaris HOM05D007216 ORTHO05D009261 5.0e-40 169.1 214 42.1
Ciclev10005777m.g Citrus clementina HOM05D007216 ORTHO05D009261 6.6e-40 168.7 215 47.0
QL06p015621 Quercus lobata HOM05D007216 ORTHO05D009261 8.6e-40 168.3 236 44.5
Duzib151G0028 Durio zibethinus HOM05D007216 ORTHO05D009261 1.1e-39 167.9 207 44.9
Haze_11299 Corylus avellana HOM05D007216 ORTHO05D009261 4.3e-39 166.0 212 47.2
Haze_11297 Corylus avellana HOM05D007216 ORTHO05D009261 9.5e-39 164.9 212 46.7
Prupe.1G030500 Prunus persica HOM05D007216 ORTHO05D009261 3.6e-38 162.9 205 45.4
RcHm_v2.0_Chr4g0390311 Rosa chinensis HOM05D007216 ORTHO05D009261 1.0e-37 161.4 214 47.2
CiPaw.02G116600 Carya illinoinensis HOM05D007216 ORTHO05D009261 2.0e-36 157.1 213 46.9
TWI73G0753 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 2.0e-36 157.1 214 44.9
Cpa.g.sc58.45 Carica papaya HOM05D007216 ORTHO05D009261 5.8e-36 155.6 211 41.7
CSS0019068 Camellia sinensis var. sinensis HOM05D007216 ORTHO05D009261 9.8e-36 154.8 172 48.3
TAR365G0907 Trochodendron aralioides HOM05D007216 ORTHO05D009261 1.3e-35 154.5 211 43.6
Oeu008788.2 Olea europaea HOM05D007216 ORTHO05D009261 1.7e-35 154.1 206 46.6
FAN12G1817 Fragaria x ananassa HOM05D007216 ORTHO05D009261 6.4e-35 152.1 218 44.0
COL.COLO4_15786 Corchorus olitorius HOM05D007216 ORTHO05D009261 1.1e-34 151.4 225 41.3
FvH4_4g02610 Fragaria vesca HOM05D007216 ORTHO05D009261 1.4e-34 151.0 218 43.6
MD13G1206900 Malus domestica HOM05D007216 ORTHO05D009261 5.4e-34 149.1 205 42.4
MD16G1208400 Malus domestica HOM05D007216 ORTHO05D009261 1.2e-33 147.9 206 44.2
TWI09G1088 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 2.0e-33 147.1 193 47.7
Eucgr.H00196 Eucalyptus grandis HOM05D007216 ORTHO05D009261 3.5e-33 146.4 224 40.6
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 3.5e-33 146.4 221 41.6
Gohir.A09G222900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 3.9e-32 142.9 201 39.8
Gorai.006G246400 Gossypium raimondii HOM05D007216 ORTHO05D009261 1.9e-31 140.6 201 40.3
Rhsim02G0032900 Rhododendron simsii HOM05D007216 ORTHO05D009261 2.5e-31 140.2 156 50.0
Actinidia05467 Actinidia chinensis HOM05D007216 ORTHO05D009261 9.5e-31 138.3 188 46.8
Cc03_g04820 Coffea canephora HOM05D007216 ORTHO05D009261 9.5e-31 138.3 224 41.5
Solyc09g083360.3 Solanum lycopersicum HOM05D007216 ORTHO05D009261 9.5e-31 138.3 213 40.8
PGR031G3332 Punica granatum HOM05D007216 ORTHO05D009261 1.6e-30 137.5 190 42.1
Nn1g02593 Nelumbo nucifera HOM05D007216 ORTHO05D009261 2.1e-30 137.1 193 43.5
Sopen09g032280 Solanum pennellii HOM05D007216 ORTHO05D009261 2.1e-30 137.1 210 40.0
A09p20520 Brassica napus HOM05D007216 ORTHO05D009261 1.1e-29 134.8 212 37.7
BraA09t37658Z Brassica rapa HOM05D007216 ORTHO05D009261 1.4e-29 134.4 187 41.2
Nn3g19525 Nelumbo nucifera HOM05D007216 ORTHO05D009261 1.4e-29 134.4 188 43.1
Actinidia08446 Actinidia chinensis HOM05D007216 ORTHO05D009261 3.1e-29 133.3 192 45.3
C09p25930 Brassica napus HOM05D007216 ORTHO05D009261 4.0e-29 132.9 188 40.4
BolC9t55498H Brassica oleracea HOM05D007216 ORTHO05D009261 4.0e-29 132.9 188 40.4
Gohir.D02G042400 Gossypium hirsutum HOM05D007216 ORTHO05D009261 4.0e-29 132.9 203 40.4
BcaC04g21907 Brassica carinata HOM05D007216 ORTHO05D009261 8.9e-29 131.7 187 40.1
Eucgr.J01563 Eucalyptus grandis HOM05D007216 ORTHO05D009261 1.5e-28 131.0 157 45.2
Gorai.005G046700 Gossypium raimondii HOM05D007216 ORTHO05D009261 2.0e-28 130.6 203 39.4
MSTRG.4097 Avicennia marina HOM05D007216 ORTHO05D009261 3.4e-28 129.8 215 41.9
AL390U10010 Arabidopsis lyrata HOM05D007216 ORTHO05D009261 7.5e-28 128.6 220 35.9
Lalb_Chr03g0037861 Lupinus albus HOM05D007216 ORTHO05D009261 9.8e-28 128.3 185 44.9
SpUn0744_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 9.8e-28 128.3 187 38.5
DCAR_027275 Daucus carota HOM05D007216 ORTHO05D009261 2.2e-27 127.1 214 39.3
CANSAT78G2280 Cannabis sativa HOM05D007216 ORTHO05D009261 2.9e-27 126.7 224 37.1
Dinv29914 Davidia involucrata HOM05D007216 ORTHO05D009261 2.9e-27 126.7 125 51.2
Thhalv10003353m.g Eutrema salsugineum HOM05D007216 ORTHO05D009261 2.9e-27 126.7 187 39.6
Gohir.D09G224900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 1.1e-26 124.8 154 42.2
Medtr1g040435 Medicago truncatula HOM05D007216 ORTHO05D009261 1.1e-26 124.8 232 40.5
Sed0021571 Sechium edule HOM05D007216 ORTHO05D009261 1.9e-26 124.0 217 35.0
BcaB07g31004 Brassica carinata HOM05D007216 ORTHO05D009261 2.4e-26 123.6 187 39.6
AT5G43650 Arabidopsis thaliana HOM05D007216 ORTHO05D009261 4.1e-26 122.9 185 37.3
Gohir.A02G035500 Gossypium hirsutum HOM05D007216 ORTHO05D009261 4.1e-26 122.9 179 40.2
Psat6g102240 Pisum sativum HOM05D007216 ORTHO05D009261 5.4e-26 122.5 225 38.2
BcaC06g31685 Brassica carinata HOM05D007216 ORTHO05D009261 7.1e-26 122.1 186 38.2
GSVIVG01018111001 Vitis vinifera HOM05D007216 ORTHO05D009261 1.6e-25 120.9 150 44.7
Glyma.02G000800 Glycine max HOM05D007216 ORTHO05D009261 4.6e-25 119.4 187 39.0
Aa31LG5G3580 Aethionema arabicum HOM05D007216 ORTHO05D009261 1.0e-24 118.2 221 34.8
Sed0000846 Sechium edule HOM05D007216 ORTHO05D009261 1.0e-24 118.2 192 39.1
THA.LOC104827376 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 1.0e-24 118.2 185 38.4
CARHR006300 Cardamine hirsuta HOM05D007216 ORTHO05D009261 3.9e-24 116.3 187 33.7
Migut.G00433 Erythranthe guttata HOM05D007216 ORTHO05D009261 8.6e-24 115.2 213 37.6
THA.LOC104801097 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 8.6e-24 115.2 245 33.5
TPR.G22479 Trifolium pratense HOM05D007216 ORTHO05D009261 1.5e-23 114.4 226 36.7
Carub.0008s0499 Capsella rubella HOM05D007216 ORTHO05D009261 4.3e-23 112.8 187 36.4
BcaC06g34638 Brassica carinata HOM05D007216 ORTHO05D009261 1.6e-22 110.9 186 37.1
C07p26230 Brassica napus HOM05D007216 ORTHO05D009261 1.6e-22 110.9 186 37.1
BolC7t43151H Brassica oleracea HOM05D007216 ORTHO05D009261 1.6e-22 110.9 186 37.1
BraA06t27645Z Brassica rapa HOM05D007216 ORTHO05D009261 2.1e-22 110.5 186 37.6
A06p47770 Brassica napus HOM05D007216 ORTHO05D009261 2.8e-22 110.2 186 37.1
ClCG06G006720 Citrullus lanatus HOM05D007216 ORTHO05D009261 2.8e-22 110.2 231 32.5
Sed0019243 Sechium edule HOM05D007216 ORTHO05D009261 4.7e-22 109.4 163 39.9
DCAR_027276 Daucus carota HOM05D007216 ORTHO05D009261 1.1e-21 108.2 173 40.5
Nitab4.5_0004798g0070 Nicotiana tabacum HOM05D007216 ORTHO05D009261 1.1e-21 108.2 213 35.7
Sc13g0004990 Simmondsia chinensis HOM05D007216 ORTHO05D009261 8.9e-21 105.1 221 33.5
ATR0665G548 Amborella trichopoda HOM05D007216 ORTHO05D009261 2.0e-20 104.0 161 38.5
Phvul.007G280700 Phaseolus vulgaris HOM05D007216 ORTHO05D009261 9.9e-20 101.7 152 40.8
MELO3C026778.2 Cucumis melo HOM05D007216 ORTHO05D009261 4.9e-19 99.4 197 31.0
CsaV3_2G013060 Cucumis sativus L. HOM05D007216 ORTHO05D009261 4.9e-19 99.4 161 35.4
CAN.G1007.15 Capsicum annuum HOM05D007216 ORTHO05D009261 1.9e-18 97.4 142 39.4
Lj6C656T7 Lonicera japonica HOM05D007216 ORTHO05D009261 1.9e-18 97.4 193 37.8
Nitab4.5_0000525g0160 Nicotiana tabacum HOM05D007216 ORTHO05D009261 2.1e-17 94.0 213 31.5
Hma1.2p1_0893F.1_g233480 Hydrangea macrophylla HOM05D007216 ORTHO05D009261 3.5e-17 93.2 90 50.0
SpUn0429_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 4.6e-17 92.8 185 31.4
Dinv44631 Davidia involucrata HOM05D007216 ORTHO05D009261 3.3e-15 86.7 90 48.9
Zm00001eb056760 Zea mays HOM05D007216 ORTHO05D009261 1.6e-14 84.3 131 38.2
Os03g0741100 Oryza sativa ssp. japonica HOM05D007216 ORTHO05D009261 1.5e-12 77.8 136 36.0
HPP92_023468 Vanilla planifolia HOM05D007216 ORTHO05D009261 3.4e-12 76.6 180 33.9
HPP92_023463 Vanilla planifolia HOM05D007216 ORTHO05D009261 8.4e-11 72.0 159 33.3
Aqoxy5G00327 Aquilegia oxysepala HOM05D007216 ORTHO05D009261 1.9e-10 70.9 99 44.4
HPP92_027840 Vanilla planifolia HOM05D007216 ORTHO05D009261 4.2e-10 69.7 186 31.7
Zm00001eb370010 Zea mays HOM05D007216 ORTHO05D049898 1.5e-07 61.2 136 34.6
FAN19G2456 Fragaria x ananassa HOM05D004059 ORTHO05D004591 2.5e-07 60.5 128 34.4
arahy.Tifrunner.gnm1.ann1.H4FASW Arachis hypogaea HOM05D004059 ORTHO05D004591 1.3e-06 58.2 172 32.6
FvH4_1g07710 Fragaria vesca HOM05D004059 ORTHO05D004591 1.3e-06 58.2 124 33.9
Atru.chr7.1612 Acer truncatum HOM05D004059 ORTHO05D004591 1.6e-06 57.8 152 32.9
Zm00001eb120960 Zea mays HOM05D004059 ORTHO05D004591 1.6e-06 57.8 124 31.5
Lalb_Chr08g0232291 Lupinus albus HOM05D004059 ORTHO05D004591 2.1e-06 57.4 148 35.1
PGSC0003DMG400022043 Solanum tuberosum HOM05D004059 ORTHO05D004591 2.8e-06 57.0 152 30.3
Os01g0196300 Oryza sativa ssp. japonica HOM05D004059 ORTHO05D004591 4.8e-06 56.2 73 43.8
MD02G1081600 Malus domestica HOM05D004059 ORTHO05D004591 8.1e-06 55.5 162 28.4


User provided reference genes

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