Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0113900 Salix brachista HOM05D006587 ORTHO05D008487 1.1e-194 683.3 385 100.0
Potri.008G149800 Populus trichocarpa HOM05D006587 ORTHO05D008487 4.2e-159 565.1 298 94.0
Potri.010G091400 Populus trichocarpa HOM05D006587 ORTHO05D008487 1.3e-136 490.3 304 81.6
Manes.03G181700 Manihot esculenta HOM05D006587 ORTHO05D008487 2.2e-136 489.6 293 83.6
Cfa015608 Carpinus fangiana HOM05D006587 ORTHO05D006035 1.5e-132 476.9 290 81.7
CSS0008441 Camellia sinensis var. sinensis HOM05D006587 ORTHO05D008487 1.8e-130 469.9 294 77.6
Thecc.04G226500 Theobroma cacao HOM05D006587 ORTHO05D008487 4.1e-130 468.8 291 79.7
GSVIVG01017920001 Vitis vinifera HOM05D006587 ORTHO05D008487 9.1e-130 467.6 300 75.3
Hma1.2p1_0511F.1_g168960 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 1.2e-129 467.2 291 78.4
Atru.chr4.2522 Acer truncatum HOM05D006587 ORTHO05D008487 3.5e-129 465.7 293 77.8
Actinidia23494 Actinidia chinensis HOM05D006587 ORTHO05D008487 3.8e-128 462.2 285 79.3
Prupe.1G154500 Prunus persica HOM05D006587 ORTHO05D008487 3.8e-128 462.2 292 80.1
PGR004G2885 Punica granatum HOM05D006587 ORTHO05D008487 1.2e-126 457.2 294 75.9
TWI73G1280 Tripterygium wilfordii HOM05D006587 ORTHO05D008487 1.6e-126 456.8 288 77.8
CANSAT78G1956 Cannabis sativa HOM05D006587 ORTHO05D008487 3.6e-126 455.7 293 75.8
Gohir.A01G023600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 4.7e-126 455.3 297 75.4
Ciclev10005176m.g Citrus clementina HOM05D006587 ORTHO05D008487 6.1e-126 454.9 289 78.9
Gorai.002G024100 Gossypium raimondii HOM05D006587 ORTHO05D008487 8.0e-126 454.5 297 75.4
Actinidia40165 Actinidia chinensis HOM05D006587 ORTHO05D008487 2.3e-125 453.0 281 79.0
TAR362G0294 Trochodendron aralioides HOM05D006587 ORTHO05D008487 4.0e-125 452.2 288 76.4
Gohir.D01G021600 Gossypium hirsutum HOM05D006587 ORTHO05D008487 6.8e-125 451.4 297 75.1
MD13G1186800 Malus domestica HOM05D006587 ORTHO05D008487 6.8e-125 451.4 286 79.7
Rhsim04G0204300 Rhododendron simsii HOM05D006587 ORTHO05D008487 3.4e-124 449.1 289 76.5
Cc03_g03390 Coffea canephora HOM05D006587 ORTHO05D008487 5.7e-124 448.4 294 74.5
ClCG05G005300 Citrullus lanatus HOM05D006587 ORTHO05D008487 3.7e-123 445.7 301 74.8
Eucgr.H03560 Eucalyptus grandis HOM05D006587 ORTHO05D008487 3.7e-123 445.7 290 74.1
FAN22G2243 Fragaria x ananassa HOM05D000104 ORTHO05D006391 4.8e-123 445.3 287 77.0
RcHm_v2.0_Chr4g0417131 Rosa chinensis HOM05D006587 ORTHO05D008487 4.8e-123 445.3 289 77.2
TAR633G1367 Trochodendron aralioides HOM05D006587 ORTHO05D008487 8.3e-123 444.5 296 74.3
MD16G1187700 Malus domestica HOM05D006587 ORTHO05D008487 1.1e-122 444.1 289 78.5
CiPaw.02G094600 Carya illinoinensis HOM05D006587 ORTHO05D008487 1.4e-122 443.7 290 75.5
FAN07G2036 Fragaria x ananassa HOM05D006587 ORTHO05D008487 1.4e-122 443.7 286 77.3
ECA236G2554 Erigeron canadensis HOM05D006587 ORTHO05D008487 1.8e-122 443.4 290 75.2
FAN12G2172 Fragaria x ananassa HOM05D006587 ORTHO05D006391 2.4e-122 443.0 286 76.6
THA.LOC104818820 Tarenaya hassleriana HOM05D006587 ORTHO05D008487 4.1e-122 442.2 299 73.2
Thhalv10013731m.g Eutrema salsugineum HOM05D006587 ORTHO05D008487 7.0e-122 441.4 289 77.2
BolC9t58560H Brassica oleracea HOM05D006587 ORTHO05D008487 1.6e-121 440.3 292 75.7
MELO3C006549.2 Cucumis melo HOM05D006587 ORTHO05D008487 1.6e-121 440.3 300 73.7
BcaC04g18580 Brassica carinata HOM05D006587 ORTHO05D008487 4.5e-121 438.7 297 74.4
CsaV3_3G013530 Cucumis sativus L. HOM05D006587 ORTHO05D008487 4.5e-121 438.7 306 73.2
Sc19g0004360 Simmondsia chinensis HOM05D006587 ORTHO05D008487 4.5e-121 438.7 295 73.2
C09p56970 Brassica napus HOM05D006587 ORTHO05D008487 5.9e-121 438.3 292 75.3
Solyc01g079710.3 Solanum lycopersicum HOM05D006587 ORTHO05D008487 5.9e-121 438.3 289 75.4
BcaB08g36587 Brassica carinata HOM05D006587 ORTHO05D008487 7.7e-121 438.0 289 75.8
Carub.0006s1763 Capsella rubella HOM05D006587 ORTHO05D008487 7.7e-121 438.0 308 71.8
Nitab4.5_0000144g0120 Nicotiana tabacum HOM05D006587 ORTHO05D008487 7.7e-121 438.0 294 73.1
Lsat_1_v5_gn_9_80941 Lactuca sativa HOM05D006587 ORTHO05D008487 1.3e-120 437.2 289 75.1
Sopen01g031480 Solanum pennellii HOM05D006587 ORTHO05D008487 1.7e-120 436.8 289 75.1
AL6G30780 Arabidopsis lyrata HOM05D006587 ORTHO05D008487 3.8e-120 435.6 288 75.3
CAN.G69.11 Capsicum annuum HOM05D006587 ORTHO05D008487 6.5e-120 434.9 298 72.8
AT5G19300 Arabidopsis thaliana HOM05D006587 ORTHO05D008487 1.1e-119 434.1 288 76.0
BraA10t44108Z Brassica rapa HOM05D006587 ORTHO05D008487 1.5e-119 433.7 288 75.7
MSTRG.24750 Avicennia marina HOM05D006587 ORTHO05D008487 3.2e-119 432.6 295 73.2
Migut.N00169 Erythranthe guttata HOM05D006587 ORTHO05D008487 4.2e-119 432.2 298 72.5
Haze_00934 Corylus avellana HOM05D006587 ORTHO05D008487 5.5e-119 431.8 290 75.2
TPR.G5533 Trifolium pratense HOM05D006587 ORTHO05D008487 5.5e-119 431.8 291 74.6
Sp6g25120 Schrenkiella parvula HOM05D006587 ORTHO05D008487 9.5e-119 431.0 289 75.4
Sed0010167 Sechium edule HOM05D006587 ORTHO05D008487 1.6e-118 430.3 293 74.1
CARHR193670 Cardamine hirsuta HOM05D006587 ORTHO05D008487 2.1e-118 429.9 297 74.1
Dinv38415 Davidia involucrata HOM05D006587 ORTHO05D008487 3.6e-118 429.1 265 80.8
Lalb_Chr06g0164781 Lupinus albus HOM05D006587 ORTHO05D008487 4.7e-118 428.7 286 73.8
HanXRQChr13g0400281 Helianthus annuus HOM05D006587 ORTHO05D008487 1.0e-117 427.6 285 73.3
A10p20380 Brassica napus HOM05D006587 ORTHO05D008487 1.8e-117 426.8 288 74.7
DCAR_002398 Daucus carota HOM05D006587 ORTHO05D008487 4.0e-117 425.6 299 70.6
VMungo0720G0184 Vigna mungo HOM05D006587 ORTHO05D008487 6.8e-117 424.9 287 74.2
SalBow5G2730 Salvia bowleyana HOM05D006587 ORTHO05D008487 5.7e-116 421.8 304 70.7
Medtr1g105065 Medicago truncatula HOM05D006587 ORTHO05D008487 7.5e-116 421.4 288 73.6
PGSC0003DMG400008999 Solanum tuberosum HOM05D006587 ORTHO05D008487 1.3e-115 420.6 323 67.8
SalBow5G0644 Salvia bowleyana HOM05D006587 ORTHO05D008487 2.8e-115 419.5 293 72.7
Glyma.20G143100 Glycine max HOM05D006587 ORTHO05D008487 3.7e-115 419.1 288 72.6
Ca_10966_v3 Cicer arietinum L. HOM05D006587 ORTHO05D008487 2.4e-114 416.4 290 71.0
PSO302G0285 Papaver somniferum HOM05D006587 ORTHO05D008487 3.1e-114 416.0 288 71.2
Aa31LG11G10390 Aethionema arabicum HOM05D006587 ORTHO05D008487 9.2e-114 414.5 299 72.2
Psat6g209880 Pisum sativum HOM05D006587 ORTHO05D008487 1.2e-113 414.1 290 72.8
PSO170G4636 Papaver somniferum HOM05D006587 ORTHO05D008487 3.5e-113 412.5 288 70.8
Sabra10G0051900 Salix brachista HOM05D006587 ORTHO05D008487 4.5e-113 412.1 300 70.0
FAN17G1856 Fragaria x ananassa HOM05D000104 ORTHO05D006391 5.9e-113 411.8 293 72.4
Lj5g0006939 Lotus japonicus HOM05D006587 ORTHO05D008487 5.9e-113 411.8 290 70.3
Phvul.007G053900 Phaseolus vulgaris HOM05D006587 ORTHO05D008487 3.8e-112 409.1 291 71.5
SGA_v2.0_scaffold10G05110 Striga asiatica HOM05D006587 ORTHO05D008487 5.0e-112 408.7 305 68.5
Dinv44504 Davidia involucrata HOM05D006587 ORTHO05D008487 1.9e-111 406.8 226 85.4
arahy.Tifrunner.gnm1.ann1.G9UJER Arachis hypogaea HOM05D006587 ORTHO05D008487 5.6e-111 405.2 288 72.2
arahy.Tifrunner.gnm1.ann1.HZWC9V Arachis hypogaea HOM05D006587 ORTHO05D008487 5.6e-111 405.2 288 72.2
Hma1.2p1_0511F.1_g168950 Hydrangea macrophylla HOM05D006587 ORTHO05D008487 1.2e-110 404.1 269 73.2
MBI17_g12493_MAGBIO Magnolia biondii HOM05D006587 ORTHO05D008487 2.1e-110 403.3 262 72.1
HPP92_010726 Vanilla planifolia HOM05D006587 ORTHO05D008487 3.6e-110 402.5 288 68.4
Ah.13g074000 Amaranthus hybridus HOM05D006587 ORTHO05D008487 2.3e-109 399.8 294 68.4
Peaxi162Scf01336g00122 Petunia axillaris HOM05D006587 ORTHO05D008487 8.9e-109 397.9 285 71.2
EL10As3g23313 Beta vulgaris HOM05D006587 ORTHO05D008487 1.2e-108 397.5 297 67.3
Os04g0244500 Oryza sativa ssp. japonica HOM05D006587 ORTHO05D008487 1.4e-106 390.6 284 69.4
Aqoxy2G03329 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 5.4e-106 388.7 297 65.7
Cpa.g.sc147.29 Carica papaya HOM05D006587 ORTHO05D008487 9.2e-106 387.9 238 81.1
QL06p003535 Quercus lobata HOM05D006587 ORTHO05D008487 2.3e-104 383.3 246 76.0
AUR62043415 Chenopodium quinoa HOM05D006587 ORTHO05D008487 4.4e-100 369.0 264 67.8
Nitab4.5_0000180g0030 Nicotiana tabacum HOM05D006587 ORTHO05D008487 1.1e-95 354.4 294 62.6
Lj3A741G38 Lonicera japonica HOM05D006587 ORTHO05D008487 7.3e-95 351.7 273 66.7
ATR0626G244 Amborella trichopoda HOM05D006587 ORTHO05D008487 3.6e-94 349.4 277 64.6
SMO364G0578 Selaginella moellendorffii HOM05D006587 ORTHO05D008487 3.5e-81 306.2 287 56.4
unitig_899.g15640 Utricularia gibba HOM05D006587 ORTHO05D008487 6.0e-81 305.4 320 55.6
Mapoly0049s0075 Marchantia polymorpha HOM05D006587 ORTHO05D008487 9.6e-79 298.1 313 48.2
Pp3c7_20660 Physcomitrium patens HOM05D006587 ORTHO05D008487 1.8e-77 293.9 287 51.9
Duzib151G0305 Durio zibethinus HOM05D006587 ORTHO05D008487 9.9e-76 288.1 291 56.7
CSS0044999 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 2.1e-73 280.4 312 50.3
CSS0022730 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006391 6.2e-70 268.9 244 58.6
PRCOL_00002662 Prasinoderma coloniale HOM05D006587 ORTHO05D008487 1.8e-69 267.3 314 45.9
Aqoxy2G03328 Aquilegia oxysepala HOM05D006587 ORTHO05D008487 1.5e-68 264.2 288 55.9
Zm00001eb373340 Zea mays HOM05D006587 ORTHO05D008487 5.8e-68 262.3 209 66.0
FvH4_4g14960 Fragaria vesca HOM05D006587 ORTHO05D008487 9.6e-63 245.0 170 74.1
AUR62038173 Chenopodium quinoa HOM05D006587 ORTHO05D008487 4.8e-62 242.7 266 49.6
CDE05G0907 Ceratophyllum demersum HOM05D006587 ORTHO05D008487 6.9e-61 238.8 173 69.4
Oeu040660.1 Olea europaea HOM05D006587 ORTHO05D008487 2.0e-52 210.7 146 74.0
Cfa024389 Carpinus fangiana HOM05D006587 ORTHO05D008487 5.1e-48 196.1 357 36.4
COL.COLO4_06205 Corchorus olitorius HOM05D006587 ORTHO05D008487 5.1e-48 196.1 199 55.3
AagrBONN_evm.TU.Sc2ySwM_340.504 Anthoceros agrestis HOM05D006587 ORTHO05D008487 1.9e-42 177.6 163 59.5
Glyma.10G250600 Glycine max HOM05D006587 ORTHO05D008487 9.3e-42 175.3 124 71.8
Lalb_Chr02g0144661 Lupinus albus HOM05D006587 ORTHO05D008487 4.8e-38 162.9 138 62.3
Cre16.g670617 Chlamydomonas reinhardtii HOM05D006587 ORTHO05D008487 8.2e-38 162.2 330 33.6
QL06p003531 Quercus lobata HOM05D006587 ORTHO05D008487 5.0e-19 99.8 50 92.0
Lalb_Chr02g0144651 Lupinus albus HOM05D006587 ORTHO05D008487 2.8e-14 84.0 63 65.1
Lsat_1_v5_gn_9_31900 Lactuca sativa HOM05D006587 ORTHO05D011576 3.1e-13 80.5 110 39.1
TAR362G0446 Trochodendron aralioides HOM05D006587 ORTHO05D008487 3.8e-11 73.6 45 82.2
SEGI_15408 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 2.5e-10 70.9 45 66.7
Gorai.004G106600 Gossypium raimondii HOM05D006587 ORTHO05D008487 3.2e-10 70.5 53 69.8
PSO151G0052 Papaver somniferum HOM05D004736 ORTHO05D030424 3.2e-10 70.5 74 50.0
arahy.Tifrunner.gnm1.ann1.Y836FI Arachis hypogaea HOM05D000158 ORTHO05D000197 8.0e-09 65.9 39 71.8
Gorai.012G092500 Gossypium raimondii HOM05D006587 ORTHO05D008487 4.0e-08 63.5 47 70.2
SEGI_20820 Sequoiadendron giganteum HOM05D006587 ORTHO05D008487 1.2e-07 62.0 38 81.6
AUR62038172 Chenopodium quinoa HOM05D006503 ORTHO05D008116 2.6e-07 60.8 57 54.4


User provided reference genes

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