Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0104500 Salix brachista HOM05D005650 ORTHO05D007020 0.0e+00 1124.8 566 100.0
Potri.008G137000 Populus trichocarpa HOM05D005650 ORTHO05D007020 2.0e-279 965.3 566 88.0
Manes.15G123300 Manihot esculenta HOM05D005650 ORTHO05D007020 3.2e-232 808.5 567 73.9
Atru.chr11.825 Acer truncatum HOM05D005650 ORTHO05D007020 6.7e-230 800.8 580 72.2
Duzib248G0273 Durio zibethinus HOM05D005650 ORTHO05D007020 3.8e-225 785.0 567 71.3
Thecc.02G307700 Theobroma cacao HOM05D005650 ORTHO05D007020 5.0e-225 784.6 580 71.2
CSS0031782 Camellia sinensis var. sinensis HOM05D005650 ORTHO05D007020 2.1e-223 779.2 557 71.3
Gohir.D02G136500 Gossypium hirsutum HOM05D005650 ORTHO05D007020 2.7e-223 778.9 580 70.2
Gorai.005G152600 Gossypium raimondii HOM05D005650 ORTHO05D007020 2.7e-223 778.9 580 70.2
Gohir.A03G112000 Gossypium hirsutum HOM05D005650 ORTHO05D007020 7.9e-223 777.3 567 70.5
Ciclev10014948m.g Citrus clementina HOM05D005650 ORTHO05D007020 2.5e-221 772.3 567 71.1
Cfa015047 Carpinus fangiana HOM05D005650 ORTHO05D007020 3.3e-221 771.9 567 71.4
Duzib251G0272 Durio zibethinus HOM05D005650 ORTHO05D007020 5.7e-221 771.2 581 70.1
TAR622G0850 Trochodendron aralioides HOM05D005650 ORTHO05D007020 2.8e-220 768.8 568 69.5
QL03p037983 Quercus lobata HOM05D005650 ORTHO05D007020 8.2e-220 767.3 567 70.5
GSVIVG01011626001 Vitis vinifera HOM05D005650 ORTHO05D007020 8.2e-220 767.3 580 68.3
Dinv26372 Davidia involucrata HOM05D005650 ORTHO05D007020 1.8e-219 766.1 567 69.7
Haze_10848 Corylus avellana HOM05D005650 ORTHO05D007020 8.5e-217 757.3 580 69.3
Glyma.05G240900 Glycine max HOM05D005650 ORTHO05D007020 9.4e-216 753.8 563 68.2
Prupe.7G053000 Prunus persica HOM05D005650 ORTHO05D007020 6.1e-215 751.1 570 69.5
Nn8g41275 Nelumbo nucifera HOM05D005650 ORTHO05D007020 5.1e-214 748.0 559 68.5
arahy.Tifrunner.gnm1.ann1.L5UDEC Arachis hypogaea HOM05D005650 ORTHO05D007020 2.0e-213 746.1 580 66.7
Phvul.011G008500 Phaseolus vulgaris HOM05D005650 ORTHO05D007020 9.7e-213 743.8 557 68.2
Hma1.2p1_0192F.1_g083470 Hydrangea macrophylla HOM05D005650 ORTHO05D007020 2.2e-212 742.7 566 68.0
CiPaw.06G055300 Carya illinoinensis HOM05D005650 ORTHO05D007020 3.7e-212 741.9 567 68.1
Psat4g004560 Pisum sativum HOM05D005650 ORTHO05D007020 3.7e-212 741.9 568 68.5
MD13G1018100 Malus domestica HOM05D005650 ORTHO05D007020 1.4e-211 740.0 567 68.8
Eucgr.B02693 Eucalyptus grandis HOM05D005650 ORTHO05D007020 6.9e-211 737.6 580 66.2
Actinidia12402 Actinidia chinensis HOM05D005650 ORTHO05D007020 9.1e-211 737.3 580 66.7
MD16G1016000 Malus domestica HOM05D005650 ORTHO05D007020 9.1e-211 737.3 567 68.6
Medtr8g105900 Medicago truncatula HOM05D005650 ORTHO05D007020 9.1e-211 737.3 581 66.6
Lj4g0026003 Lotus japonicus HOM05D005650 ORTHO05D007020 2.0e-210 736.1 567 67.4
RcHm_v2.0_Chr4g0442431 Rosa chinensis HOM05D005650 ORTHO05D007020 2.0e-210 736.1 568 67.8
Nitab4.5_0002337g0070 Nicotiana tabacum HOM05D005650 ORTHO05D007020 1.3e-209 733.4 577 66.6
Glyma.08G047900 Glycine max HOM05D005650 ORTHO05D007020 1.7e-209 733.0 572 67.0
arahy.Tifrunner.gnm1.ann1.NIUA4E Arachis hypogaea HOM05D005650 ORTHO05D007020 2.2e-209 732.6 610 63.3
FvH4_4g33280 Fragaria vesca HOM05D005650 ORTHO05D007020 2.9e-209 732.3 569 67.3
VMungo1127G0110 Vigna mungo HOM05D005650 ORTHO05D007020 5.0e-209 731.5 547 68.4
Rhsim09G0087900 Rhododendron simsii HOM05D005650 ORTHO05D007020 5.5e-208 728.0 557 67.9
Sopen02g013060 Solanum pennellii HOM05D005650 ORTHO05D007020 4.7e-207 724.9 564 67.0
Solyc02g062110.4 Solanum lycopersicum HOM05D005650 ORTHO05D007020 7.9e-207 724.2 564 66.8
CAN.G1206.2 Capsicum annuum HOM05D005650 ORTHO05D007020 1.5e-205 719.9 564 66.7
TWI74G1652 Tripterygium wilfordii HOM05D005650 ORTHO05D007020 2.0e-205 719.5 582 64.6
Aqoxy2G00265 Aquilegia oxysepala HOM05D005650 ORTHO05D007020 2.6e-205 719.2 558 66.5
SGA_v2.0_scaffold111G31522 Striga asiatica HOM05D005650 ORTHO05D007020 1.3e-204 716.8 586 63.1
ECA234G4226 Erigeron canadensis HOM05D005650 ORTHO05D007020 2.2e-204 716.1 557 65.5
Sc14g0006580 Simmondsia chinensis HOM05D005650 ORTHO05D007020 7.0e-203 711.1 567 64.9
CANSAT78G2020 Cannabis sativa HOM05D005650 ORTHO05D007020 9.1e-203 710.7 585 63.4
VMungo0251G0664 Vigna mungo HOM05D005650 ORTHO05D007020 2.6e-202 709.1 547 66.9
PSO063G5777 Papaver somniferum HOM05D005650 ORTHO05D007020 7.7e-202 707.6 560 64.6
PSO782G4204 Papaver somniferum HOM05D005650 ORTHO05D007020 7.7e-202 707.6 558 64.7
HanXRQChr17g0565991 Helianthus annuus HOM05D005650 ORTHO05D007020 3.8e-201 705.3 563 64.5
DCAR_023564 Daucus carota HOM05D005650 ORTHO05D007020 5.0e-201 704.9 568 63.9
Cc11_g06590 Coffea canephora HOM05D005650 ORTHO05D007020 4.2e-200 701.8 581 63.3
MSTRG.23341 Avicennia marina HOM05D005650 ORTHO05D007020 7.2e-200 701.0 567 63.7
CsaV3_5G014540 Cucumis sativus L. HOM05D005650 ORTHO05D007020 1.1e-197 693.7 566 64.1
Lalb_Chr14g0362121 Lupinus albus HOM05D005650 ORTHO05D007020 1.1e-197 693.7 566 62.7
Lsat_1_v5_gn_4_23420 Lactuca sativa HOM05D005650 ORTHO05D007020 6.3e-196 688.0 581 62.5
SalBow3G3602 Salvia bowleyana HOM05D005650 ORTHO05D007020 6.3e-196 688.0 591 60.9
Hund07852 Selenicereus undatus HOM05D005650 ORTHO05D007020 2.4e-195 686.0 569 62.4
Cpa.g.sc362.1 Carica papaya HOM05D005650 ORTHO05D007020 7.7e-194 681.0 519 68.0
Dinv01894 Davidia involucrata HOM05D005650 ORTHO05D007020 2.2e-193 679.5 538 66.4
AUR62036082 Chenopodium quinoa HOM05D005650 ORTHO05D007020 6.5e-193 677.9 566 60.6
Sed0001111 Sechium edule HOM05D005650 ORTHO05D007020 3.2e-192 675.6 566 62.2
Carub.0002s2663 Capsella rubella HOM05D005650 ORTHO05D007020 2.1e-191 672.9 568 62.5
AT1G80910 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 2.7e-191 672.5 566 62.7
AUR62035393 Chenopodium quinoa HOM05D005650 ORTHO05D007020 5.2e-190 668.3 566 60.4
Thhalv10007433m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 5.2e-190 668.3 562 61.9
Aa31LG7G600 Aethionema arabicum HOM05D005650 ORTHO05D007020 8.8e-190 667.5 565 61.9
Thhalv10018445m.g Eutrema salsugineum HOM05D005650 ORTHO05D007020 4.4e-189 665.2 566 61.8
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 1.7e-188 663.3 566 61.5
Sp5g34830 Schrenkiella parvula HOM05D005650 ORTHO05D007020 1.7e-188 663.3 566 62.2
AL2G40470 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 6.3e-188 661.4 568 62.5
C06p29600 Brassica napus HOM05D005650 ORTHO05D007020 2.4e-187 659.4 566 61.5
CARHR073550 Cardamine hirsuta HOM05D005650 ORTHO05D007020 5.4e-187 658.3 566 61.7
BcaC08g45346 Brassica carinata HOM05D005650 ORTHO05D007020 7.0e-187 657.9 566 61.3
Lj6C735G0 Lonicera japonica HOM05D005650 ORTHO05D007020 2.7e-186 656.0 601 59.1
Nitab4.5_0000188g0130 Nicotiana tabacum HOM05D005650 ORTHO05D007020 4.5e-186 655.2 569 62.0
AL1G28180 Arabidopsis lyrata HOM05D005650 ORTHO05D007020 5.9e-186 654.8 573 60.0
TPR.G19250 Trifolium pratense HOM05D005650 ORTHO05D007020 7.7e-186 654.4 560 63.2
AT1G16020 Arabidopsis thaliana HOM05D005650 ORTHO05D007020 1.7e-185 653.3 573 59.5
BraA07t30337Z Brassica rapa HOM05D005650 ORTHO05D007020 8.5e-185 651.0 585 60.2
FAN07G2273 Fragaria x ananassa HOM05D005650 ORTHO05D007020 4.2e-184 648.7 561 61.9
CARHR016520 Cardamine hirsuta HOM05D005650 ORTHO05D007020 1.2e-183 647.1 561 59.4
BolC6t38125H Brassica oleracea HOM05D005650 ORTHO05D007020 2.1e-183 646.4 586 59.4
THA.LOC104814015 Tarenaya hassleriana HOM05D005650 ORTHO05D007020 2.7e-183 646.0 587 58.9
A07p26920 Brassica napus HOM05D005650 ORTHO05D007020 1.0e-182 644.0 558 61.5
Sp1g14330 Schrenkiella parvula HOM05D005650 ORTHO05D007020 1.0e-182 644.0 574 59.2
FAN17G2396 Fragaria x ananassa HOM05D005650 ORTHO05D007020 2.3e-182 642.9 555 62.0
CiPaw.05G158000 Carya illinoinensis HOM05D005650 ORTHO05D007020 3.0e-182 642.5 484 70.0
Aa31LG4G1220 Aethionema arabicum HOM05D005650 ORTHO05D007020 2.2e-180 636.3 576 60.1
unitig_21.g20969 Utricularia gibba HOM05D005650 ORTHO05D007020 2.4e-179 632.9 568 57.6
Carub.0001s1582 Capsella rubella HOM05D005650 ORTHO05D007020 5.4e-179 631.7 560 58.8
ATR0021G018 Amborella trichopoda HOM05D005650 ORTHO05D007020 7.7e-178 627.9 562 59.3
BraA09t41479Z Brassica rapa HOM05D005650 ORTHO05D007020 6.6e-177 624.8 575 59.0
A09p61060 Brassica napus HOM05D005650 ORTHO05D007020 5.6e-176 621.7 575 58.8
BolC8t52011H Brassica oleracea HOM05D005650 ORTHO05D007020 1.2e-175 620.5 575 59.1
C08p44650 Brassica napus HOM05D005650 ORTHO05D007020 2.8e-175 619.4 575 58.4
Migut.H02363 Erythranthe guttata HOM05D005650 ORTHO05D007020 4.9e-172 608.6 568 58.1
Peaxi162Scf00439g00528 Petunia axillaris HOM05D005650 ORTHO05D007020 1.2e-170 604.0 564 58.7
Ah.01g015510 Amaranthus hybridus HOM05D005650 ORTHO05D007020 5.9e-170 601.7 572 55.9
Os08g0427300 Oryza sativa ssp. japonica HOM05D005650 ORTHO05D007020 5.0e-169 598.6 566 54.6
BcaB03g14509 Brassica carinata HOM05D005650 ORTHO05D007020 2.5e-168 596.3 561 57.4
SEGI_01999 Sequoiadendron giganteum HOM05D005650 ORTHO05D007020 4.3e-168 595.5 570 54.6
PGR004G1106 Punica granatum HOM05D005650 ORTHO05D007020 3.6e-167 592.4 499 63.1
Zm00001eb179310 Zea mays HOM05D005650 ORTHO05D007020 4.0e-166 589.0 566 54.8
SHI04292 Sapria himalayana HOM05D005650 ORTHO05D007020 8.9e-166 587.8 548 58.6
CDE05G1068 Ceratophyllum demersum HOM05D005650 ORTHO05D007020 6.8e-158 561.6 525 58.1
MELO3C026414.2 Cucumis melo HOM05D005650 ORTHO05D007020 6.4e-156 555.1 493 59.4
COL.COLO4_27613 Corchorus olitorius HOM05D005650 ORTHO05D007020 3.4e-141 506.1 407 65.8
Sed0000862 Sechium edule HOM05D005650 ORTHO05D007020 2.4e-131 473.4 503 53.1
HPP92_009689 Vanilla planifolia HOM05D005650 ORTHO05D007020 1.5e-125 454.1 442 55.2
Mapoly0059s0063 Marchantia polymorpha HOM05D005650 ORTHO05D007020 3.0e-121 439.9 581 44.2
Pp3c16_7940 Physcomitrium patens HOM05D005650 ORTHO05D007020 8.7e-121 438.3 571 43.3
EL10Ac9g20842 Beta vulgaris HOM05D005650 ORTHO05D007020 8.1e-119 431.8 388 57.0
SMO146G0258 Selaginella moellendorffii HOM05D005650 ORTHO05D007020 8.7e-113 411.8 556 41.5
Oeu059514.1 Olea europaea HOM05D005650 ORTHO05D007020 1.3e-100 371.3 517 44.5
AagrBONN_evm.TU.Sc2ySwM_117.2271 Anthoceros agrestis HOM05D005650 ORTHO05D007020 4.4e-96 356.3 526 39.9
Dinv00920 Davidia involucrata HOM05D005650 ORTHO05D007020 3.5e-61 240.4 139 84.2
DCAR_023531 Daucus carota HOM05D005650 ORTHO05D007020 6.6e-52 209.5 486 34.2
Oeu036123.1 Olea europaea HOM05D005650 ORTHO05D007020 1.2e-42 178.7 123 69.9
C06p32880 Brassica napus HOM05D005650 ORTHO05D007020 1.3e-36 158.7 137 62.0
C05p23900 Brassica napus HOM05D005650 ORTHO05D007020 7.1e-30 136.3 288 35.1
CiPaw.05G157900 Carya illinoinensis HOM05D005650 ORTHO05D007020 8.6e-28 129.4 79 75.9
C06p32890 Brassica napus HOM05D005650 ORTHO05D007020 4.6e-21 107.1 104 55.8
MELO3C019077.2 Cucumis melo HOM05D005650 ORTHO05D007020 7.8e-21 106.3 72 72.2
CBR_g31091 Chara braunii HOM05D000019 ORTHO05D000048 1.0e-20 105.9 143 37.8
Lsat_1_v5_gn_1_123601 Lactuca sativa HOM05D005650 ORTHO05D007020 3.0e-20 104.4 90 61.1
Lsat_1_v5_gn_7_69840 Lactuca sativa HOM05D005650 ORTHO05D007020 1.5e-19 102.1 63 74.6
Lsat_1_v5_gn_2_121941 Lactuca sativa HOM05D005650 ORTHO05D007020 2.8e-18 97.8 130 43.1
Cre07.g327000 Chlamydomonas reinhardtii HOM05D005650 ORTHO05D007020 2.2e-15 88.2 265 27.2
CBR_g31097 Chara braunii HOM05D000019 ORTHO05D000048 1.3e-10 72.4 53 56.6
BolC6t38409H Brassica oleracea HOM05D005650 ORTHO05D007020 9.9e-08 62.8 120 37.5
MCO11G935 Micromonas commoda HOM05D005650 ORTHO05D007020 1.7e-07 62.0 137 32.8
C06p53600 Brassica napus HOM05D005650 ORTHO05D040396 9.3e-06 56.2 46 52.2


User provided reference genes

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