Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 3.3e-150 535.0 274 100.0
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 2.2e-114 416.0 221 96.8
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 3.6e-104 382.1 222 87.4
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 6.4e-85 318.2 218 72.0
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 8.9e-71 271.2 220 61.8
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 1.2e-70 270.8 220 62.7
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 5.8e-70 268.5 220 62.3
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 8.3e-69 264.6 221 62.4
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 3.2e-68 262.7 224 61.6
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 3.2e-68 262.7 222 62.2
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 3.2e-68 262.7 218 63.3
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 4.1e-68 262.3 221 61.5
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 5.4e-68 261.9 217 62.2
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 1.6e-67 260.4 227 58.1
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 2.1e-67 260.0 220 60.9
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 6.0e-67 258.5 220 59.5
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 6.0e-67 258.5 221 58.4
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 1.3e-66 257.3 210 62.4
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 2.3e-66 256.5 210 62.4
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 2.3e-66 256.5 217 65.4
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 2.3e-66 256.5 210 62.9
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 3.9e-66 255.8 210 61.9
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 1.9e-65 253.4 238 57.6
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 2.5e-65 253.1 210 61.9
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 2.5e-65 253.1 221 58.8
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 4.3e-65 252.3 211 61.6
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 1.2e-64 250.8 210 61.4
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 1.2e-64 250.8 210 61.4
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 1.6e-64 250.4 214 61.2
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.1e-64 250.0 204 62.7
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 4.7e-64 248.8 228 55.7
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 8.1e-64 248.1 214 59.8
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 1.1e-63 247.7 214 58.9
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 2.4e-63 246.5 216 59.7
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 3.1e-63 246.1 222 58.6
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 3.1e-63 246.1 211 60.2
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 3.1e-63 246.1 222 58.6
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 4.0e-63 245.7 203 64.5
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 4.0e-63 245.7 222 59.0
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 5.2e-63 245.4 191 63.4
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 6.8e-63 245.0 220 60.0
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 8.9e-63 244.6 221 58.8
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 1.2e-62 244.2 188 64.4
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 4.4e-62 242.3 212 59.0
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 5.8e-62 241.9 219 58.4
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 7.6e-62 241.5 227 57.3
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 1.7e-61 240.4 223 57.4
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 1.7e-61 240.4 220 58.2
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 2.2e-61 240.0 234 56.0
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 4.9e-61 238.8 220 58.2
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 4.9e-61 238.8 220 58.2
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 8.4e-61 238.0 264 49.6
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 8.4e-61 238.0 221 58.4
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 2.4e-60 236.5 223 57.8
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 2.4e-60 236.5 223 57.0
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 4.1e-60 235.7 223 56.5
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 5.4e-60 235.3 224 57.6
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 7.1e-60 235.0 207 57.5
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 7.1e-60 235.0 214 56.1
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 7.1e-60 235.0 226 57.5
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 1.2e-59 234.2 227 56.4
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 2.1e-59 233.4 227 56.8
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 2.1e-59 233.4 224 56.2
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 2.7e-59 233.0 183 65.6
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 4.6e-59 232.3 238 53.8
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 4.6e-59 232.3 176 67.6
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 6.0e-59 231.9 227 55.9
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 2.3e-58 229.9 219 54.8
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 5.1e-58 228.8 221 58.4
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 6.6e-58 228.4 169 66.9
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 1.1e-57 227.6 211 55.9
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 1.5e-57 227.3 211 55.5
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 7.3e-57 224.9 220 57.3
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 9.6e-57 224.6 212 56.1
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 1.2e-56 224.2 214 56.5
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.2e-56 224.2 213 54.9
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 2.1e-56 223.4 211 57.8
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 4.7e-56 222.2 211 55.9
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 6.2e-56 221.9 234 53.0
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 1.4e-55 220.7 185 59.5
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 5.2e-55 218.8 219 54.3
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 9.0e-55 218.0 193 59.1
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.2e-54 217.6 220 55.0
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 2.0e-54 216.9 203 53.7
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 1.3e-53 214.2 216 55.1
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 6.4e-53 211.8 204 52.9
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 1.1e-52 211.1 161 67.1
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 1.9e-52 210.3 213 54.0
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 2.7e-51 206.5 231 48.9
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 6.0e-51 205.3 204 54.4
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 1.0e-50 204.5 160 66.9
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 1.7e-50 203.8 213 51.6
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 1.5e-49 200.7 213 52.6
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 2.1e-48 196.8 223 50.2
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 8.1e-48 194.9 187 55.6
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 1.1e-47 194.5 209 54.5
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 3.1e-47 193.0 164 61.6
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.2e-46 191.0 205 53.2
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 9.9e-46 188.0 219 48.4
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 9.9e-46 188.0 229 48.5
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 1.7e-45 187.2 145 65.5
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.7e-45 187.2 250 48.4
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 6.4e-45 185.3 179 55.9
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 1.4e-44 184.1 184 54.3
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 4.2e-44 182.6 218 46.8
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 3.5e-43 179.5 223 45.3
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 2.3e-42 176.8 150 62.7
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 3.7e-40 169.5 295 38.6
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 1.1e-39 167.9 203 44.3
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 1.2e-38 164.5 201 43.8
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 1.5e-38 164.1 151 58.9
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 3.4e-38 162.9 259 42.9
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 3.2e-36 156.4 204 41.7
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.2e-35 154.5 121 66.9
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 3.5e-35 152.9 258 38.0
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 3.5e-35 152.9 220 41.4
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 4.6e-35 152.5 130 62.3
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 1.0e-34 151.4 167 52.7
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 3.1e-31 139.8 139 55.4
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 4.0e-31 139.4 162 52.5
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 2.9e-29 133.3 131 48.1
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 1.4e-23 114.4 160 43.1
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 3.1e-23 113.2 175 42.9
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 4.1e-23 112.8 220 34.5
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 9.0e-23 111.7 92 64.1
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 2.9e-21 106.7 217 35.5
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 4.2e-20 102.8 99 53.5
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 7.2e-20 102.1 109 46.8
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 3.9e-18 96.3 109 54.1
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 5.1e-18 95.9 176 39.8
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 4.3e-17 92.8 84 59.5
Sabra10G0113400 Salix brachista HOM05D004725 ORTHO05D005683 4.3e-17 92.8 161 40.4
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 1.7e-16 90.9 99 50.5
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 4.8e-16 89.4 197 31.0
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 3.2e-12 76.6 53 73.6
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 9.4e-12 75.1 66 60.6
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 5.1e-10 69.3 49 67.3
Lalb_Chr20g0110431 Lupinus albus HOM05D004725 ORTHO05D005683 3.3e-09 66.6 64 48.4
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 3.3e-09 66.6 212 24.5
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 7.4e-09 65.5 80 51.2
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 1.7e-08 64.3 125 40.8
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 1.4e-07 61.2 66 48.5
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 5.3e-07 59.3 84 47.6
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 9.1e-07 58.5 62 53.2
CARHR286240 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.0e-06 57.4 63 42.9


User provided reference genes

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