Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0062400 Salix brachista HOM05D005601 ORTHO05D007265 1.0e-251 872.8 416 100.0
Potri.008G084100 Populus trichocarpa HOM05D005601 ORTHO05D007265 7.4e-178 627.5 463 71.1
Potri.010G172300 Populus trichocarpa HOM05D005601 ORTHO05D007265 2.0e-170 602.8 473 67.9
Sabra10G0131500 Salix brachista HOM05D005601 ORTHO05D007265 1.1e-157 560.5 469 64.2
Manes.14G007400 Manihot esculenta HOM05D005601 ORTHO05D007265 2.2e-145 519.6 465 60.2
CiPaw.11G059700 Carya illinoinensis HOM05D005601 ORTHO05D007265 1.1e-141 507.3 465 58.5
Dinv42472 Davidia involucrata HOM05D005601 ORTHO05D007265 1.9e-141 506.5 465 58.5
CSS0009872 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 3.4e-138 495.7 465 57.0
CSS0045419 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 3.4e-138 495.7 465 57.0
CANSAT56G2459 Cannabis sativa HOM05D005601 ORTHO05D007265 1.1e-133 480.7 463 55.1
Atru.chr1.81 Acer truncatum HOM05D005601 ORTHO05D007265 5.6e-133 478.4 457 56.5
MELO3C012601.2 Cucumis melo HOM05D005601 ORTHO05D007265 9.5e-133 477.6 456 56.1
GSVIVG01020400001 Vitis vinifera HOM05D005601 ORTHO05D007265 8.1e-132 474.6 465 54.0
Rhsim06G0242900 Rhododendron simsii HOM05D005601 ORTHO05D007265 1.5e-130 470.3 501 52.5
CsaV3_7G022950 Cucumis sativus L. HOM05D005601 ORTHO05D007265 3.4e-130 469.2 464 54.1
QL09p016707 Quercus lobata HOM05D005601 ORTHO05D007265 5.8e-130 468.4 480 53.8
PSO675G6728 Papaver somniferum HOM05D005601 ORTHO05D007265 7.5e-130 468.0 459 53.8
Carub.0001s1603 Capsella rubella HOM05D005601 ORTHO05D007265 9.8e-130 467.6 455 54.3
ClCG09G022740 Citrullus lanatus HOM05D005601 ORTHO05D007265 2.2e-129 466.5 495 52.5
QL04p090699 Quercus lobata HOM05D005601 ORTHO05D007265 2.2e-129 466.5 480 53.5
BcaC05g25587 Brassica carinata HOM05D005601 ORTHO05D007265 1.1e-128 464.2 456 53.5
C05p14450 Brassica napus HOM05D005601 ORTHO05D007265 1.1e-128 464.2 456 53.5
vmacro11692 Vaccinium macrocarpon HOM05D005601 ORTHO05D007265 1.1e-128 464.2 485 52.0
BcaB02g06608 Brassica carinata HOM05D005601 ORTHO05D007265 2.4e-128 463.0 456 53.5
BolC5t30171H Brassica oleracea HOM05D005601 ORTHO05D007265 2.4e-128 463.0 456 53.5
AL1G28410 Arabidopsis lyrata HOM05D005601 ORTHO05D007265 4.1e-128 462.2 455 53.4
AT1G16290 Arabidopsis thaliana HOM05D005601 ORTHO05D007265 5.4e-128 461.8 457 53.6
Eucgr.F04464 Eucalyptus grandis HOM05D005601 ORTHO05D007265 9.2e-128 461.1 457 54.5
Sed0023216 Sechium edule HOM05D005601 ORTHO05D007265 2.1e-127 459.9 464 53.9
A06p12210 Brassica napus HOM05D005601 ORTHO05D007265 4.6e-127 458.8 456 53.1
BraA06t24389Z Brassica rapa HOM05D005601 ORTHO05D007265 4.6e-127 458.8 456 53.1
CARHR016760 Cardamine hirsuta HOM05D005601 ORTHO05D007265 1.3e-126 457.2 455 52.5
TWI38G0323 Tripterygium wilfordii HOM05D005601 ORTHO05D007265 1.7e-126 456.8 469 53.9
Peaxi162Scf00452g00334 Petunia axillaris HOM05D005601 ORTHO05D007265 2.3e-126 456.4 455 54.1
PGR031G2718 Punica granatum HOM05D005601 ORTHO05D007265 2.3e-126 456.4 483 52.4
Nitab4.5_0006109g0020 Nicotiana tabacum HOM05D005601 ORTHO05D007265 5.1e-126 455.3 456 53.9
CAN.G943.56 Capsicum annuum HOM05D005601 ORTHO05D007265 8.6e-126 454.5 466 53.9
Ciclev10006846m.g Citrus clementina HOM05D005601 ORTHO05D007265 1.9e-125 453.4 456 53.7
Nitab4.5_0000029g0250 Nicotiana tabacum HOM05D005601 ORTHO05D007265 2.5e-125 453.0 447 54.6
Sopen07g034790 Solanum pennellii HOM05D005601 ORTHO05D007265 5.6e-125 451.8 457 53.6
Thhalv10007775m.g Eutrema salsugineum HOM05D005601 ORTHO05D007265 1.6e-124 450.3 455 53.0
Sc09g0007790 Simmondsia chinensis HOM05D005601 ORTHO05D007265 1.6e-124 450.3 460 52.8
Solyc07g066640.3 Solanum lycopersicum HOM05D005601 ORTHO05D007265 2.8e-124 449.5 457 53.4
Migut.M01519 Erythranthe guttata HOM05D005601 ORTHO05D007265 3.6e-124 449.1 464 51.1
RcHm_v2.0_Chr5g0024141 Rosa chinensis HOM05D005601 ORTHO05D007265 3.6e-124 449.1 465 52.5
Sp1g14480 Schrenkiella parvula HOM05D005601 ORTHO05D007583 4.7e-124 448.7 446 52.5
PGSC0003DMG400022116 Solanum tuberosum HOM05D005601 ORTHO05D007265 1.1e-123 447.6 456 53.7
Prupe.4G131800 Prunus persica HOM05D005601 ORTHO05D007265 1.4e-123 447.2 481 51.4
FvH4_3g14650 Fragaria vesca HOM05D005601 ORTHO05D007265 8.9e-123 444.5 468 51.9
Glyma.08G165100 Glycine max HOM05D005601 ORTHO05D007265 2.6e-122 443.0 425 55.3
Lj2A13G19 Lonicera japonica HOM05D005601 ORTHO05D007265 9.9e-122 441.0 454 52.9
Nn7g38204 Nelumbo nucifera HOM05D005601 ORTHO05D007265 1.3e-121 440.7 459 50.3
SGA_v2.0_scaffold7G03617 Striga asiatica HOM05D005601 ORTHO05D007265 1.3e-121 440.7 467 52.5
MD05G1234300 Malus domestica HOM05D005601 ORTHO05D007265 3.8e-121 439.1 462 51.7
THA.LOC104812373 Tarenaya hassleriana HOM05D005601 ORTHO05D007265 3.8e-121 439.1 486 49.6
Aqoxy1G01411 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 7.1e-120 434.9 457 50.1
Aa31LG7G820 Aethionema arabicum HOM05D005601 ORTHO05D007265 9.2e-120 434.5 458 52.0
Lj3g0011890 Lotus japonicus HOM05D005601 ORTHO05D007265 3.9e-118 429.1 464 50.0
FAN11G1412 Fragaria x ananassa HOM05D005601 ORTHO05D007265 5.1e-118 428.7 487 49.9
MD10G1210800 Malus domestica HOM05D005601 ORTHO05D007265 5.1e-118 428.7 464 50.4
Gorai.002G109700 Gossypium raimondii HOM05D005601 ORTHO05D007265 2.5e-117 426.4 464 49.8
Thecc.07G184900 Theobroma cacao HOM05D005601 ORTHO05D007265 7.3e-117 424.9 456 50.7
DCAR_016842 Daucus carota HOM05D005601 ORTHO05D000532 1.8e-115 420.2 442 51.4
SalBow8G4673 Salvia bowleyana HOM05D005601 ORTHO05D007265 4.0e-115 419.1 453 51.0
Lalb_Chr25g0284511 Lupinus albus HOM05D005601 ORTHO05D007265 2.0e-114 416.8 462 49.6
TAR627G0482 Trochodendron aralioides HOM05D005601 ORTHO05D007265 2.9e-113 412.9 412 54.1
MSTRG.7080 Avicennia marina HOM05D005601 ORTHO05D007265 8.4e-113 411.4 469 48.8
Aqoxy72s008 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 6.0e-111 405.2 455 47.9
Psat1g014320 Pisum sativum HOM05D005601 ORTHO05D007265 6.0e-111 405.2 473 48.2
Lalb_Chr20g0108481 Lupinus albus HOM05D005601 ORTHO05D007265 3.9e-110 402.5 456 48.2
TPR.G22999 Trifolium pratense HOM05D005601 ORTHO05D007265 5.3e-107 392.1 481 45.7
Oeu019720.3 Olea europaea HOM05D005601 ORTHO05D007265 2.0e-106 390.2 471 47.1
Gorai.013G145200 Gossypium raimondii HOM05D005601 ORTHO05D007265 5.8e-106 388.7 460 45.2
Gohir.D13G129200 Gossypium hirsutum HOM05D005601 ORTHO05D007265 1.1e-104 384.4 460 44.8
Zm00001eb207280 Zea mays HOM05D005601 ORTHO05D007265 4.2e-104 382.5 464 46.3
FAN21G2538 Fragaria x ananassa HOM05D005601 ORTHO05D007265 7.1e-104 381.7 447 49.0
Gohir.A13G125400 Gossypium hirsutum HOM05D005601 ORTHO05D007265 7.1e-104 381.7 459 44.7
FAN16G1778 Fragaria x ananassa HOM05D005601 ORTHO05D007265 9.9e-98 361.3 447 47.7
Cc05_g16460 Coffea canephora HOM05D005601 ORTHO05D007265 6.0e-95 352.1 382 52.4
SMO196G0059 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 3.3e-93 346.3 431 42.9
SMO137G0068 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 1.4e-91 340.9 448 41.1
MBI02_g08257_MAGBIO Magnolia biondii HOM05D005601 ORTHO05D007265 1.0e-86 324.7 307 54.4
Ca_03553_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 6.3e-84 315.5 465 41.3
Ca_29556_v3 Cicer arietinum L. HOM05D005601 ORTHO05D007265 6.3e-84 315.5 465 41.3
arahy.Tifrunner.gnm1.ann1.5WL8RC Arachis hypogaea HOM05D005601 ORTHO05D007265 8.2e-84 315.1 416 44.0
Gohir.D01G084000 Gossypium hirsutum HOM05D005601 ORTHO05D007265 1.2e-82 311.2 387 47.0
Gohir.A01G099600 Gossypium hirsutum HOM05D005601 ORTHO05D007265 2.0e-82 310.5 300 53.3
Mapoly0008s0010 Marchantia polymorpha HOM05D005601 ORTHO05D007265 6.9e-75 285.4 479 34.2
CBR_g32054 Chara braunii HOM05D005601 ORTHO05D007265 4.2e-72 276.2 456 33.8
AagrBONN_evm.TU.Sc2ySwM_117.1218 Anthoceros agrestis HOM05D005601 ORTHO05D007265 5.5e-72 275.8 451 35.7
Pp3c5_22590 Physcomitrium patens HOM05D005601 ORTHO05D007265 2.1e-71 273.9 527 32.8
unitig_26.g10063 Utricularia gibba HOM05D005601 ORTHO05D007265 1.9e-64 250.8 290 47.6
Dinv19582 Davidia involucrata HOM05D005601 ORTHO05D007265 2.2e-60 237.3 200 62.5
Haze_07789 Corylus avellana HOM05D005601 ORTHO05D007265 1.6e-58 231.1 217 57.1
Oeu034984.1 Olea europaea HOM05D005601 ORTHO05D007265 5.5e-56 222.6 221 54.3
SMO170G0006 Selaginella moellendorffii HOM05D005601 ORTHO05D007265 7.2e-56 222.2 416 33.7
Dinv19583 Davidia involucrata HOM05D005601 ORTHO05D007265 2.6e-53 213.8 216 52.8
Actinidia24664 Actinidia chinensis HOM05D005601 ORTHO05D007265 2.0e-50 204.1 215 47.9
HPP92_016685 Vanilla planifolia HOM05D005601 ORTHO05D007265 8.3e-44 182.2 216 44.9
Sabra07G0055700 Salix brachista HOM05D005601 ORTHO05D007265 5.7e-37 159.5 133 63.9
HPP92_016686 Vanilla planifolia HOM05D005601 ORTHO05D007265 1.3e-36 158.3 121 61.2
unitig_26.g10062 Utricularia gibba HOM05D000493 ORTHO05D008479 2.8e-36 157.1 93 76.3
Sabra07G0055500 Salix brachista HOM05D005601 ORTHO05D007265 2.0e-34 151.0 155 54.8
Sabra07G0054100 Salix brachista HOM05D005601 ORTHO05D007265 1.3e-33 148.3 155 54.8
Sabra07G0054400 Salix brachista HOM05D005601 ORTHO05D007265 3.8e-33 146.7 155 54.2
Sabra07G0054700 Salix brachista HOM05D005601 ORTHO05D007265 6.6e-33 146.0 155 53.5
ATR0752G040 Amborella trichopoda HOM05D005601 ORTHO05D007265 9.5e-32 142.1 177 40.7
CSS0035233 Camellia sinensis var. sinensis HOM05D005601 ORTHO05D007265 2.3e-30 137.5 81 76.5
Cpa.g.sc32.54 Carica papaya HOM05D005601 ORTHO05D007265 5.2e-30 136.3 76 81.6
Cc05_g16470 Coffea canephora HOM05D005601 ORTHO05D007265 2.0e-26 124.4 74 74.3
Aqoxy4G01783 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 5.9e-26 122.9 87 64.4
Aqoxy5G02624 Aquilegia oxysepala HOM05D005601 ORTHO05D007265 2.3e-25 120.9 87 64.4
Zm00001eb338130 Zea mays HOM05D005601 ORTHO05D007265 3.3e-24 117.1 116 53.4
SEGI_03880 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 7.3e-24 115.9 80 58.8
arahy.Tifrunner.gnm1.ann1.4IME1R Arachis hypogaea HOM05D005601 ORTHO05D007265 4.7e-23 113.2 171 39.2
SEGI_02544 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 1.5e-21 108.2 88 55.7
SHI32862 Sapria himalayana HOM05D005601 ORTHO05D007265 2.2e-20 104.4 61 73.8
ATR0752G225 Amborella trichopoda HOM05D005601 ORTHO05D007265 3.7e-20 103.6 127 46.5
Medtr2g065540 Medicago truncatula HOM05D005601 ORTHO05D007265 1.1e-19 102.1 59 74.6
Sabra07G0055000 Salix brachista HOM05D005601 ORTHO05D007265 1.2e-18 98.6 118 49.2
SHI32867 Sapria himalayana HOM05D005601 ORTHO05D007265 4.6e-18 96.7 82 54.9
SEGI_07505 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 2.3e-17 94.4 73 56.2
Cc01_g09470 Coffea canephora HOM05D005601 ORTHO05D007265 2.5e-16 90.9 66 63.6
SEGI_07478 Sequoiadendron giganteum HOM05D005601 ORTHO05D007265 4.3e-16 90.1 126 42.1
ATR0752G173 Amborella trichopoda HOM05D005601 ORTHO05D007265 2.1e-15 87.8 64 60.9
Zm00001eb249880 Zea mays HOM05D005601 ORTHO05D007265 1.5e-13 81.6 53 67.9
SHI32866 Sapria himalayana HOM05D005601 ORTHO05D007265 4.4e-13 80.1 65 61.5
Cpa.g.sc32.60 Carica papaya HOM05D005601 ORTHO05D000047 1.7e-09 68.2 42 69.0
SHI32865 Sapria himalayana HOM05D005601 ORTHO05D007265 3.9e-09 67.0 45 71.1
Zm00001eb234590 Zea mays HOM05D000076 ORTHO05D007265 3.9e-09 67.0 42 69.0
Zm00001eb316750 Zea mays HOM05D000076 ORTHO05D001279 1.9e-08 64.7 42 66.7
BraA06t24405Z Brassica rapa HOM05D005601 ORTHO05D007265 5.6e-08 63.2 105 38.1
BcaC05g25566 Brassica carinata HOM05D005601 ORTHO05D007265 1.2e-07 62.0 105 37.1
A06p12420 Brassica napus HOM05D005601 ORTHO05D007265 2.1e-07 61.2 105 37.1
PRCOL_00003152 Prasinoderma coloniale HOM05D005601 ORTHO05D007265 3.6e-07 60.5 70 40.0


User provided reference genes

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