Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 1.9e-65 252.7 159 100.0
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 1.3e-58 229.9 157 91.1
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 2.3e-47 192.6 126 78.6
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 5.2e-47 191.4 157 76.4
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 8.9e-47 190.7 126 79.4
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 8.9e-47 190.7 123 81.3
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 2.6e-46 189.1 124 80.6
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 3.4e-46 188.7 128 77.3
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 3.4e-46 188.7 124 79.8
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 5.8e-46 188.0 124 79.0
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 7.5e-46 187.6 122 81.1
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 7.5e-46 187.6 128 77.3
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 9.8e-46 187.2 123 80.5
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.3e-45 186.8 123 78.9
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.3e-45 186.8 123 78.9
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.3e-45 186.8 123 78.9
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 1.3e-45 186.8 157 77.7
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 2.2e-45 186.0 123 78.0
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 2.2e-45 186.0 123 78.0
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 4.9e-45 184.9 128 76.6
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 4.9e-45 184.9 123 78.9
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 4.9e-45 184.9 123 78.9
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 4.9e-45 184.9 124 78.2
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 6.4e-45 184.5 157 77.7
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 6.4e-45 184.5 154 76.0
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 1.1e-44 183.7 124 79.0
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 1.1e-44 183.7 124 79.0
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.1e-44 183.7 128 76.6
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 1.1e-44 183.7 122 79.5
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 1.4e-44 183.3 123 76.4
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 1.4e-44 183.3 121 78.5
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.4e-44 183.3 128 75.8
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 1.4e-44 183.3 154 76.6
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 1.9e-44 183.0 126 76.2
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 2.4e-44 182.6 123 76.4
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 2.4e-44 182.6 126 77.0
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 2.4e-44 182.6 157 77.7
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 3.2e-44 182.2 126 77.0
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 4.1e-44 181.8 151 79.5
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 7.0e-44 181.0 157 76.4
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 7.0e-44 181.0 122 76.2
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 7.0e-44 181.0 157 72.0
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 7.0e-44 181.0 124 76.6
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 9.2e-44 180.6 138 73.2
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 9.2e-44 180.6 126 74.6
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 9.2e-44 180.6 124 75.0
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 9.2e-44 180.6 121 76.0
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 1.6e-43 179.9 122 76.2
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 1.6e-43 179.9 126 75.4
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 1.6e-43 179.9 125 76.0
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 2.0e-43 179.5 122 75.4
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 2.0e-43 179.5 122 75.4
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 2.0e-43 179.5 122 75.4
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 2.0e-43 179.5 122 75.4
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 2.0e-43 179.5 122 75.4
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 2.0e-43 179.5 154 76.6
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 2.7e-43 179.1 120 76.7
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 2.7e-43 179.1 122 76.2
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 2.7e-43 179.1 123 77.2
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 3.5e-43 178.7 120 75.8
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 3.5e-43 178.7 120 75.8
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 4.6e-43 178.3 122 74.6
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 4.6e-43 178.3 120 75.8
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 7.8e-43 177.6 122 74.6
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 7.8e-43 177.6 122 74.6
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 1.0e-42 177.2 123 74.8
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 1.0e-42 177.2 123 76.4
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 1.0e-42 177.2 122 74.6
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 1.7e-42 176.4 122 74.6
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 1.7e-42 176.4 123 77.2
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 3.9e-42 175.3 122 73.8
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 5.0e-42 174.9 122 73.8
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 5.0e-42 174.9 122 73.8
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 5.0e-42 174.9 122 73.0
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 5.0e-42 174.9 122 74.6
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 8.6e-42 174.1 123 74.0
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 8.6e-42 174.1 122 73.8
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 1.5e-41 173.3 126 71.4
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 4.3e-41 171.8 152 71.7
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 4.3e-41 171.8 120 72.5
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 7.3e-41 171.0 122 75.4
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 7.3e-41 171.0 153 73.9
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 9.5e-41 170.6 123 73.2
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 1.2e-40 170.2 120 70.0
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 1.6e-40 169.9 121 71.1
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 2.8e-40 169.1 124 71.0
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 4.7e-40 168.3 123 70.7
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 4.7e-40 168.3 118 72.0
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 4.7e-40 168.3 126 70.6
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 1.4e-39 166.8 129 69.8
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 1.4e-39 166.8 126 69.8
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 1.8e-39 166.4 122 74.6
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 3.1e-39 165.6 123 69.9
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 5.2e-39 164.9 153 71.9
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 6.8e-39 164.5 123 69.1
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 8.9e-39 164.1 121 70.2
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 1.5e-38 163.3 121 70.2
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 2.0e-38 162.9 122 70.5
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 2.0e-38 162.9 123 69.1
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.3e-37 160.2 118 68.6
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 2.2e-37 159.5 205 48.8
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.9e-37 159.1 118 67.8
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 3.7e-37 158.7 122 71.3
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 3.7e-37 158.7 123 65.9
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 3.7e-37 158.7 117 67.5
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 4.9e-37 158.3 118 67.8
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 6.4e-37 157.9 118 67.8
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 6.4e-37 157.9 118 67.8
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 6.4e-37 157.9 116 69.0
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 2.1e-35 152.9 126 63.5
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 4.6e-35 151.8 195 48.7
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 6.0e-35 151.4 102 76.5
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 1.3e-34 150.2 118 65.3
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 3.9e-34 148.7 100 77.0
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 5.1e-34 148.3 96 80.2
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 8.6e-34 147.5 121 62.0
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 4.3e-33 145.2 102 74.5
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 7.3e-33 144.4 126 61.9
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 1.6e-32 143.3 123 67.5
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 2.1e-32 142.9 117 61.5
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 1.1e-31 140.6 91 80.2
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 2.3e-31 139.4 120 57.5
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.4e-30 135.6 93 75.3
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 1.7e-29 133.3 121 58.7
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 3.7e-29 132.1 123 56.1
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 8.4e-29 131.0 123 56.1
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 1.9e-28 129.8 120 58.3
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 2.3e-26 122.9 121 54.5
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 1.5e-25 120.2 123 48.8
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 7.3e-25 117.9 99 66.7
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 1.7e-21 106.7 91 60.4
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 1.7e-21 106.7 91 60.4
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 3.5e-19 99.0 65 73.8
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 4.6e-19 98.6 79 67.1
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.9e-18 95.5 101 56.4
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.4e-15 87.0 102 52.9
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 3.5e-11 72.4 70 61.4
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 1.0e-10 70.9 70 60.0
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 1.0e-10 70.9 70 60.0
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 1.1e-09 67.4 47 68.1
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 4.0e-07 58.9 48 54.2
SHI19173 Sapria himalayana HOM05D005429 ORTHO05D006697 2.0e-06 56.6 117 36.8


User provided reference genes

Program Settings