Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0042400 Salix brachista HOM05D001415 ORTHO05D001075 2.6e-62 241.9 122 100.0
Potri.008G057800 Populus trichocarpa HOM05D001415 ORTHO05D001075 2.4e-28 129.0 80 87.5
Potri.010G201700 Populus trichocarpa HOM05D001415 ORTHO05D001075 4.2e-28 128.3 80 87.5
Manes.07G117800 Manihot esculenta HOM05D001415 ORTHO05D001075 1.6e-27 126.3 80 83.8
Manes.10G028700 Manihot esculenta HOM05D001415 ORTHO05D001075 1.3e-26 123.2 80 82.5
Haze_17089 Corylus avellana HOM05D001415 ORTHO05D001075 4.8e-24 114.8 80 75.0
Cfa001452 Carpinus fangiana HOM05D001415 ORTHO05D001075 6.2e-24 114.4 80 75.0
CiPaw.02G185400 Carya illinoinensis HOM05D001415 ORTHO05D001075 5.3e-23 111.3 75 78.7
Cc02_g07600 Coffea canephora HOM05D001415 ORTHO05D001075 3.4e-22 108.6 78 71.8
Glyma.14G067500 Glycine max HOM05D001415 ORTHO05D001075 9.9e-22 107.1 76 72.4
CANSAT56G0089 Cannabis sativa HOM05D001415 ORTHO05D001075 1.3e-21 106.7 82 74.4
Actinidia02936 Actinidia chinensis HOM05D001415 ORTHO05D001075 2.9e-21 105.5 67 79.1
Ciclev10033183m.g Citrus clementina HOM05D001415 ORTHO05D001075 2.9e-21 105.5 85 70.6
CiPaw.01G289500 Carya illinoinensis HOM05D001415 ORTHO05D001075 3.8e-21 105.1 65 84.6
Lalb_Chr18g0053201 Lupinus albus HOM05D001415 ORTHO05D001075 4.9e-21 104.8 67 80.6
Ca_05883_v3 Cicer arietinum L. HOM05D001415 ORTHO05D001075 8.4e-21 104.0 68 77.9
TPR.G3500 Trifolium pratense HOM05D001415 ORTHO05D001075 8.4e-21 104.0 86 64.0
Medtr5g080260 Medicago truncatula HOM05D001415 ORTHO05D001075 1.4e-20 103.2 83 67.5
Phvul.008G191701 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 1.4e-20 103.2 73 74.0
Nn2g11165 Nelumbo nucifera HOM05D001415 ORTHO05D001075 1.9e-20 102.8 75 77.3
ClCG09G019600 Citrullus lanatus HOM05D001415 ORTHO05D001075 2.4e-20 102.4 79 67.1
MELO3C021616.2 Cucumis melo HOM05D001415 ORTHO05D001075 2.4e-20 102.4 67 79.1
Hma1.2p1_0998F.1_g246100 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 4.2e-20 101.7 75 72.0
CsaV3_5G026780 Cucumis sativus L. HOM05D001415 ORTHO05D001075 5.4e-20 101.3 67 77.6
Lsat_1_v5_gn_2_118460 Lactuca sativa HOM05D001415 ORTHO05D001075 5.4e-20 101.3 78 73.1
Nn2g13402 Nelumbo nucifera HOM05D001415 ORTHO05D001075 5.4e-20 101.3 74 77.0
Glyma.02G248900 Glycine max HOM05D001415 ORTHO05D001075 9.3e-20 100.5 79 68.4
Rhsim03G0133500 Rhododendron simsii HOM05D001415 ORTHO05D001075 1.2e-19 100.1 76 64.5
Atru.chr12.418 Acer truncatum HOM05D001415 ORTHO05D001075 2.1e-19 99.4 92 66.3
ECA238G4842 Erigeron canadensis HOM05D001415 ORTHO05D001075 2.7e-19 99.0 79 70.9
Gohir.A13G018500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.5e-19 98.6 83 66.3
Lalb_Chr17g0346301 Lupinus albus HOM05D001415 ORTHO05D001075 3.5e-19 98.6 87 67.8
LjContig00141g0017499 Lotus japonicus HOM05D001415 ORTHO05D001075 4.6e-19 98.2 78 73.1
Medtr3g067980 Medicago truncatula HOM05D001415 ORTHO05D001075 6.0e-19 97.8 81 70.4
HanXRQChr07g0201511 Helianthus annuus HOM05D001415 ORTHO05D001075 1.3e-18 96.7 86 62.8
Sc10g0001700 Simmondsia chinensis HOM05D001415 ORTHO05D001075 3.9e-18 95.1 67 77.6
Migut.F01456 Erythranthe guttata HOM05D001415 ORTHO05D001075 5.1e-18 94.7 91 58.2
Lalb_Chr15g0084661 Lupinus albus HOM05D001415 ORTHO05D001075 5.1e-18 94.7 73 64.4
Lalb_Chr04g0251121 Lupinus albus HOM05D001415 ORTHO05D001075 1.5e-17 93.2 91 62.6
ClCG07G003480 Citrullus lanatus HOM05D001415 ORTHO05D001075 2.5e-17 92.4 66 72.7
CSS0013409 Camellia sinensis var. sinensis HOM05D001415 ORTHO05D001075 5.6e-17 91.3 70 71.4
MD07G1201200 Malus domestica HOM05D001415 ORTHO05D001075 5.6e-17 91.3 64 82.8
Aqoxy2G02269 Aquilegia oxysepala HOM05D001415 ORTHO05D001075 7.3e-17 90.9 90 62.2
MELO3C023874.2 Cucumis melo HOM05D001415 ORTHO05D001075 9.6e-17 90.5 66 71.2
CARHR134540 Cardamine hirsuta HOM05D001415 ORTHO05D001075 1.3e-16 90.1 84 60.7
FAN03G1064 Fragaria x ananassa HOM05D001415 ORTHO05D001075 1.3e-16 90.1 70 72.9
FAN10G0897 Fragaria x ananassa HOM05D001415 ORTHO05D001075 1.3e-16 90.1 71 71.8
QL08p060355 Quercus lobata HOM05D001415 ORTHO05D001075 1.3e-16 90.1 96 55.2
THA.LOC109117081 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 2.1e-16 89.4 89 61.8
Oeu012944.2 Olea europaea HOM05D001415 ORTHO05D001075 1.4e-15 86.7 72 62.5
Hma1.2p1_1480F.1_g286050 Hydrangea macrophylla HOM05D001415 ORTHO05D001075 2.4e-15 85.9 81 63.0
Lalb_Chr10g0104651 Lupinus albus HOM05D001415 ORTHO05D001075 3.1e-15 85.5 69 71.0
Sp4g21960 Schrenkiella parvula HOM05D001415 ORTHO05D001075 3.1e-15 85.5 82 61.0
Dinv26032 Davidia involucrata HOM05D000371 ORTHO05D008019 4.0e-15 85.1 74 63.5
Thhalv10017695m.g Eutrema salsugineum HOM05D001415 ORTHO05D001075 4.0e-15 85.1 81 60.5
RcHm_v2.0_Chr1g0367921 Rosa chinensis HOM05D001415 ORTHO05D001075 4.0e-15 85.1 70 68.6
SalBow6G6345 Salvia bowleyana HOM05D001415 ORTHO05D001075 4.0e-15 85.1 77 62.3
BcaB06g29109 Brassica carinata HOM05D001415 ORTHO05D001075 5.3e-15 84.7 78 62.8
MBI14_g04657_MAGBIO Magnolia biondii HOM05D001415 ORTHO05D001075 5.3e-15 84.7 73 67.1
BcaC02g12100 Brassica carinata HOM05D001415 ORTHO05D001075 6.9e-15 84.3 89 59.6
A05p06700 Brassica napus HOM05D001415 ORTHO05D001075 6.9e-15 84.3 89 59.6
C04p07830 Brassica napus HOM05D001415 ORTHO05D001075 6.9e-15 84.3 89 59.6
BolC4t22402H Brassica oleracea HOM05D001415 ORTHO05D001075 6.9e-15 84.3 89 59.6
BraA05t19637Z Brassica rapa HOM05D001415 ORTHO05D001075 6.9e-15 84.3 89 59.6
BcaB02g09096 Brassica carinata HOM05D001415 ORTHO05D001075 1.2e-14 83.6 89 58.4
MBI05_g29691_MAGBIO Magnolia biondii HOM05D001415 ORTHO05D001075 1.5e-14 83.2 99 52.5
THA.LOC104810035 Tarenaya hassleriana HOM05D001415 ORTHO05D001075 2.6e-14 82.4 91 54.9
Gohir.A05G348600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.5e-14 81.6 90 56.7
Gohir.D04G063900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.5e-14 81.6 90 56.7
Gorai.012G071500 Gossypium raimondii HOM05D001415 ORTHO05D001075 4.5e-14 81.6 90 56.7
Sed0003934 Sechium edule HOM05D001415 ORTHO05D001075 4.5e-14 81.6 65 67.7
Thecc.10G036800 Theobroma cacao HOM05D001415 ORTHO05D001075 5.8e-14 81.3 85 55.3
Phvul.001G233300 Phaseolus vulgaris HOM05D001415 ORTHO05D001075 7.6e-14 80.9 81 58.0
Sed0008951 Sechium edule HOM05D001415 ORTHO05D001075 9.9e-14 80.5 73 57.5
Carub.0004s2175 Capsella rubella HOM05D001415 ORTHO05D001075 1.3e-13 80.1 78 60.3
Gohir.D13G019500 Gossypium hirsutum HOM05D001415 ORTHO05D001075 1.7e-13 79.7 83 57.8
AL4G37150 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 2.9e-13 79.0 78 59.0
AT2G39705 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 2.9e-13 79.0 78 59.0
Lsat_1_v5_gn_9_64901 Lactuca sativa HOM05D001415 ORTHO05D001075 4.9e-13 78.2 83 56.6
BolC4t28246H Brassica oleracea HOM05D001415 ORTHO05D001075 8.4e-13 77.4 78 61.5
DCAR_027603 Daucus carota HOM05D001415 ORTHO05D001075 1.4e-12 76.6 67 65.7
Duzib128G0356 Durio zibethinus HOM05D001415 ORTHO05D001075 1.9e-12 76.3 86 52.3
A04p30340 Brassica napus HOM05D001415 ORTHO05D001075 2.4e-12 75.9 78 61.5
BraA04t18474Z Brassica rapa HOM05D001415 ORTHO05D001075 2.4e-12 75.9 78 61.5
Duzib114G0513 Durio zibethinus HOM05D001415 ORTHO05D001075 5.4e-12 74.7 81 55.6
TPR.G15833 Trifolium pratense HOM05D001415 ORTHO05D001075 9.3e-12 73.9 88 50.0
Sed0019804 Sechium edule HOM05D001415 ORTHO05D001075 2.1e-11 72.8 67 58.2
BcaC02g07426 Brassica carinata HOM05D001415 ORTHO05D001075 2.7e-11 72.4 78 59.0
C04p67490 Brassica napus HOM05D001415 ORTHO05D001075 2.7e-11 72.4 78 59.0
HanXRQChr09g0250171 Helianthus annuus HOM05D001415 ORTHO05D001075 2.7e-11 72.4 79 57.0
Gorai.013G021600 Gossypium raimondii HOM05D001415 ORTHO05D001075 1.0e-10 70.5 38 86.8
Eucgr.J01236 Eucalyptus grandis HOM05D001415 ORTHO05D001075 1.3e-10 70.1 84 50.0
HanXRQChr10g0312871 Helianthus annuus HOM05D001415 ORTHO05D001075 3.0e-10 68.9 76 53.9
MD01G1136300 Malus domestica HOM05D001415 ORTHO05D001075 5.1e-10 68.2 42 83.3
Prupe.2G237800 Prunus persica HOM05D001415 ORTHO05D001075 5.1e-10 68.2 42 83.3
Thhalv10010948m.g Eutrema salsugineum HOM05D001415 ORTHO05D001075 6.7e-10 67.8 84 50.0
Glyma.18G037400 Glycine max HOM05D001415 ORTHO05D001075 6.7e-10 67.8 79 55.7
Sed0000866 Sechium edule HOM05D001415 ORTHO05D001075 6.7e-10 67.8 76 48.7
SalBow1G2982 Salvia bowleyana HOM05D000007 ORTHO05D000521 1.1e-09 67.0 38 81.6
BcaC07g39877 Brassica carinata HOM05D001415 ORTHO05D001075 2.5e-09 65.9 83 49.4
Glyma.11G220000 Glycine max HOM05D001415 ORTHO05D001075 2.5e-09 65.9 35 85.7
HPP92_027005 Vanilla planifolia HOM05D001415 ORTHO05D001075 2.5e-09 65.9 64 57.8
A09p48520 Brassica napus HOM05D001415 ORTHO05D001075 3.3e-09 65.5 86 50.0
BraA09t40304Z Brassica rapa HOM05D001415 ORTHO05D001075 3.3e-09 65.5 86 50.0
PGSC0003DMG400006357 Solanum tuberosum HOM05D001415 ORTHO05D001075 3.3e-09 65.5 61 59.0
BcaB01g00087 Brassica carinata HOM05D001415 ORTHO05D001075 4.3e-09 65.1 80 48.8
Carub.0005s2224 Capsella rubella HOM05D001415 ORTHO05D001075 5.6e-09 64.7 84 47.6
FAN01G1035 Fragaria x ananassa HOM05D001415 ORTHO05D001075 7.4e-09 64.3 61 65.6
FAN01G1619 Fragaria x ananassa HOM05D001415 ORTHO05D001075 7.4e-09 64.3 61 65.6
FAN06G1409 Fragaria x ananassa HOM05D001415 ORTHO05D001075 7.4e-09 64.3 61 65.6
FAN06G4365 Fragaria x ananassa HOM05D001415 ORTHO05D001075 7.4e-09 64.3 61 65.6
CAN.G1366.20 Capsicum annuum HOM05D001415 ORTHO05D001075 9.6e-09 63.9 48 68.8
C08p30820 Brassica napus HOM05D001415 ORTHO05D001075 1.3e-08 63.5 80 51.2
BolC8t50708H Brassica oleracea HOM05D001415 ORTHO05D001075 1.3e-08 63.5 90 47.8
CARHR165570 Cardamine hirsuta HOM05D001415 ORTHO05D001075 1.6e-08 63.2 74 50.0
HPP92_006626 Vanilla planifolia HOM05D001415 ORTHO05D001075 2.8e-08 62.4 84 47.6
Gohir.A10G220900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.7e-08 62.0 36 80.6
Gohir.D10G233100 Gossypium hirsutum HOM05D001415 ORTHO05D001075 3.7e-08 62.0 36 80.6
Gorai.011G266700 Gossypium raimondii HOM05D001415 ORTHO05D001075 3.7e-08 62.0 36 80.6
AL5G36670 Arabidopsis lyrata HOM05D001415 ORTHO05D001075 6.2e-08 61.2 75 50.7
Ciclev10030229m.g Citrus clementina HOM05D001415 ORTHO05D001075 1.4e-07 60.1 91 44.0
AT3G55515 Arabidopsis thaliana HOM05D001415 ORTHO05D001075 1.8e-07 59.7 71 47.9
BcaB02g08413 Brassica carinata HOM05D001415 ORTHO05D001075 1.8e-07 59.7 77 50.6
BcaC02g09763 Brassica carinata HOM05D001415 ORTHO05D001075 1.8e-07 59.7 77 50.6
C04p36850 Brassica napus HOM05D001415 ORTHO05D001075 1.8e-07 59.7 77 50.6
Os03g0272900 Oryza sativa ssp. japonica HOM05D001415 ORTHO05D001075 1.8e-07 59.7 93 44.1
Rhsim01G0230800 Rhododendron simsii HOM05D001415 ORTHO05D001075 3.1e-07 58.9 61 59.0
Potri.001G242800 Populus trichocarpa HOM05D001415 ORTHO05D001075 4.0e-07 58.5 87 46.0
TWI79G1693 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 4.0e-07 58.5 88 45.5
Potri.009G034300 Populus trichocarpa HOM05D001415 ORTHO05D001075 5.3e-07 58.2 86 46.5
Gohir.A05G093900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 9.0e-07 57.4 100 40.0
Gohir.D05G094400 Gossypium hirsutum HOM05D001415 ORTHO05D001075 9.0e-07 57.4 100 40.0
Gorai.009G097500 Gossypium raimondii HOM05D001415 ORTHO05D001075 9.0e-07 57.4 100 40.0
RcHm_v2.0_Chr5g0065921 Rosa chinensis HOM05D001415 ORTHO05D001075 9.0e-07 57.4 95 42.1
Duzib168G2106 Durio zibethinus HOM05D001415 ORTHO05D001075 1.5e-06 56.6 100 40.0
HPP92_018137 Vanilla planifolia HOM05D001415 ORTHO05D001075 1.5e-06 56.6 63 55.6
PSO274G0001 Papaver somniferum HOM05D001415 ORTHO05D001075 2.6e-06 55.8 52 61.5
PSO513G0025 Papaver somniferum HOM05D001415 ORTHO05D001075 2.6e-06 55.8 52 61.5
HPP92_012600 Vanilla planifolia HOM05D001415 ORTHO05D001075 2.6e-06 55.8 82 46.3
A04p04410 Brassica napus HOM05D001415 ORTHO05D001075 3.4e-06 55.5 75 45.3
BolC4t25114H Brassica oleracea HOM05D001415 ORTHO05D001075 3.4e-06 55.5 75 46.7
BraA04t16154Z Brassica rapa HOM05D001415 ORTHO05D001075 3.4e-06 55.5 75 45.3
MD07G1170600 Malus domestica HOM05D001415 ORTHO05D001075 3.4e-06 55.5 35 74.3
Oeu053887.1 Olea europaea HOM05D001415 ORTHO05D001075 3.4e-06 55.5 103 42.7
TWI31G0218 Tripterygium wilfordii HOM05D001415 ORTHO05D001075 3.4e-06 55.5 88 43.2
BcaB02g08412 Brassica carinata HOM05D001415 ORTHO05D001075 4.5e-06 55.1 75 45.3
COL.COLO4_17147 Corchorus olitorius HOM05D001415 ORTHO05D001075 4.5e-06 55.1 30 76.7
Gohir.A05G293900 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.5e-06 55.1 30 76.7
Gohir.D05G294600 Gossypium hirsutum HOM05D001415 ORTHO05D001075 4.5e-06 55.1 30 76.7
Lalb_Chr19g0137921 Lupinus albus HOM05D001415 ORTHO05D001075 4.5e-06 55.1 97 37.1
SalBow3G1548 Salvia bowleyana HOM05D001415 ORTHO05D001075 4.5e-06 55.1 68 50.0
Duzib150G0909 Durio zibethinus HOM05D001415 ORTHO05D001075 5.8e-06 54.7 99 38.4
Migut.F01961 Erythranthe guttata HOM05D001415 ORTHO05D001075 5.8e-06 54.7 30 80.0
Medtr4g064520 Medicago truncatula HOM05D001415 ORTHO05D001075 5.8e-06 54.7 96 40.6
Thecc.09G317800 Theobroma cacao HOM05D001415 ORTHO05D001075 5.8e-06 54.7 104 39.4
FvH4_3g04210 Fragaria vesca HOM05D008503 ORTHO05D001075 7.6e-06 54.3 85 47.1
Manes.02G130200 Manihot esculenta HOM05D001415 ORTHO05D001075 7.6e-06 54.3 87 44.8
Manes.10G049900 Manihot esculenta HOM05D001415 ORTHO05D001075 7.6e-06 54.3 30 76.7
Zm00001eb367930 Zea mays HOM05D001415 ORTHO05D001075 7.6e-06 54.3 40 65.0
HanXRQChr01g0010481 Helianthus annuus HOM05D001415 ORTHO05D001075 1.0e-05 53.9 95 35.8
Nn2g11570 Nelumbo nucifera HOM05D001415 ORTHO05D001075 1.0e-05 53.9 30 76.7
Nn2g13768 Nelumbo nucifera HOM05D001415 ORTHO05D001075 1.0e-05 53.9 48 58.3
Potri.008G035900 Populus trichocarpa HOM05D001415 ORTHO05D001075 1.0e-05 53.9 30 76.7
Potri.010G226250 Populus trichocarpa HOM05D001415 ORTHO05D001075 1.0e-05 53.9 30 76.7
TPR.G5599 Trifolium pratense HOM05D001415 ORTHO05D001075 1.0e-05 53.9 42 61.9


User provided reference genes

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