Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra08G0026800 Salix brachista HOM05D004184 ORTHO05D004863 5.1e-41 170.6 86 100.0
Manes.08G007500 Manihot esculenta HOM05D004184 ORTHO05D004863 9.4e-19 96.7 47 100.0
Manes.09G068300 Manihot esculenta HOM05D004184 ORTHO05D004863 9.4e-19 96.7 47 100.0
Potri.008G039100 Populus trichocarpa HOM05D004184 ORTHO05D004863 9.4e-19 96.7 47 100.0
Potri.010G223100 Populus trichocarpa HOM05D004184 ORTHO05D004863 9.4e-19 96.7 47 100.0
AT5G42300 Arabidopsis thaliana HOM05D004184 ORTHO05D004863 1.6e-18 95.9 47 97.9
CARHR284900 Cardamine hirsuta HOM05D004184 ORTHO05D004863 1.6e-18 95.9 47 97.9
DCAR_019101 Daucus carota HOM05D004184 ORTHO05D004863 1.6e-18 95.9 47 97.9
Mapoly0159s0011 Marchantia polymorpha HOM05D004184 ORTHO05D004863 2.7e-18 95.1 49 93.9
Sabra10G0172500 Salix brachista HOM05D004184 ORTHO05D004863 2.7e-18 95.1 47 97.9
Atru.chr12.761 Acer truncatum HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
Atru.chr12.785 Acer truncatum HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
arahy.Tifrunner.gnm1.ann1.97XRIQ Arachis hypogaea HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
arahy.Tifrunner.gnm1.ann1.AT8ALT Arachis hypogaea HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
arahy.Tifrunner.gnm1.ann1.D4REW6 Arachis hypogaea HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
arahy.Tifrunner.gnm1.ann1.JTH4ZG Arachis hypogaea HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
CSS0014649 Camellia sinensis var. sinensis HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
CDE06G0371 Ceratophyllum demersum HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
Ca_16404_v3 Cicer arietinum L. HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
Ca_16412_v3 Cicer arietinum L. HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
CsaV3_6G036470 Cucumis sativus L. HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
Duzib106G2042 Durio zibethinus HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
Duzib114G0898 Durio zibethinus HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
ECA238G0827 Erigeron canadensis HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
Migut.D02230 Erythranthe guttata HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
Migut.N02593 Erythranthe guttata HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
Glyma.13G221100 Glycine max HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
Glyma.15G091400 Glycine max HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
Gohir.A06G167700 Gossypium hirsutum HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
Gohir.D06G175000 Gossypium hirsutum HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
Gohir.D06G175100 Gossypium hirsutum HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
Gorai.010G205400 Gossypium raimondii HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
Gorai.010G205500 Gossypium raimondii HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
HanXRQChr16g0532931 Helianthus annuus HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
Lalb_Chr15g0086671 Lupinus albus HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
Lalb_Chr18g0055181 Lupinus albus HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
MBI10_g21920_MAGBIO Magnolia biondii HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
Oeu056307.1 Olea europaea HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
Phvul.006G167900 Phaseolus vulgaris HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
Psat5g100120 Pisum sativum HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
Rhsim03G0120100 Rhododendron simsii HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
Rhsim09G0151300 Rhododendron simsii HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
TPR.G25376 Trifolium pratense HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
TAR369G0716 Trochodendron aralioides HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
vmacro04867 Vaccinium macrocarpon HOM05D004184 ORTHO05D004863 3.6e-18 94.7 47 95.7
AL8G19320 Arabidopsis lyrata HOM05D004184 ORTHO05D004863 4.7e-18 94.4 47 95.7
BcaB04g20523 Brassica carinata HOM05D004184 ORTHO05D004863 4.7e-18 94.4 47 95.7
BcaC09g49169 Brassica carinata HOM05D004184 ORTHO05D004863 4.7e-18 94.4 47 95.7
A01p32830 Brassica napus HOM05D004184 ORTHO05D004863 4.7e-18 94.4 47 95.7
C01p41920 Brassica napus HOM05D004184 ORTHO05D004863 4.7e-18 94.4 47 95.7
BolC1t04148H Brassica oleracea HOM05D004184 ORTHO05D004863 4.7e-18 94.4 47 95.7
BraA01t03406Z Brassica rapa HOM05D004184 ORTHO05D004863 4.7e-18 94.4 47 95.7
Carub.0008s0690 Capsella rubella HOM05D004184 ORTHO05D004863 4.7e-18 94.4 47 95.7
Cpa.g.sc53.87 Carica papaya HOM05D004184 ORTHO05D004863 4.7e-18 94.4 47 95.7
ClCG01G013620 Citrullus lanatus HOM05D004184 ORTHO05D004863 4.7e-18 94.4 47 95.7
ClCG08G007540 Citrullus lanatus HOM05D004184 ORTHO05D004863 4.7e-18 94.4 47 95.7
MELO3C019800.2 Cucumis melo HOM05D004184 ORTHO05D004863 4.7e-18 94.4 47 95.7
MELO3C035361.2 Cucumis melo HOM05D004184 ORTHO05D004863 4.7e-18 94.4 47 95.7
Nn2g10813 Nelumbo nucifera HOM05D004184 ORTHO05D004863 4.7e-18 94.4 47 95.7
Nn2g13109 Nelumbo nucifera HOM05D004184 ORTHO05D004863 4.7e-18 94.4 47 95.7
Os02g0628800 Oryza sativa ssp. japonica HOM05D004184 ORTHO05D004863 4.7e-18 94.4 47 95.7
PGR142G3512 Punica granatum HOM05D004184 ORTHO05D004863 4.7e-18 94.4 47 95.7
Sp7g08300 Schrenkiella parvula HOM05D004184 ORTHO05D004863 4.7e-18 94.4 47 95.7
Sed0000683 Sechium edule HOM05D004184 ORTHO05D004863 4.7e-18 94.4 47 95.7
Sed0011709 Sechium edule HOM05D004184 ORTHO05D004863 4.7e-18 94.4 47 95.7
arahy.Tifrunner.gnm1.ann1.R2A6R9 Arachis hypogaea HOM05D004184 ORTHO05D004863 8.0e-18 93.6 47 93.6
Cfa011309 Carpinus fangiana HOM05D004184 ORTHO05D004863 8.0e-18 93.6 47 93.6
Thecc.10G075300 Theobroma cacao HOM05D004184 ORTHO05D004863 8.0e-18 93.6 47 93.6
TAR623G0434 Trochodendron aralioides HOM05D004184 ORTHO05D004863 8.0e-18 93.6 47 93.6
Aa31LG9G12410 Aethionema arabicum HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
Ah.13g077000 Amaranthus hybridus HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
ATR0665G147 Amborella trichopoda HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
CSS0007140 Camellia sinensis var. sinensis HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
CSS0037040 Camellia sinensis var. sinensis HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
CiPaw.13G114000 Carya illinoinensis HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
AUR62024961 Chenopodium quinoa HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 95.7
AUR62042195 Chenopodium quinoa HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 95.7
Ciclev10033494m.g Citrus clementina HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
Cc01_g11050 Coffea canephora HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
Duzib128G1839 Durio zibethinus HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
Eucgr.J00924 Eucalyptus grandis HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
Gohir.D08G216100 Gossypium hirsutum HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
Gorai.004G230000 Gossypium raimondii HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
Nn3g19559 Nelumbo nucifera HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
Oeu013466.1 Olea europaea HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
PSO063G1298 Papaver somniferum HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
PSO339G3297 Papaver somniferum HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
PSO384G0873 Papaver somniferum HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
Prupe.6G102700 Prunus persica HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
QL07p044373 Quercus lobata HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
Sc20g0001810 Simmondsia chinensis HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
THA.LOC109117042 Tarenaya hassleriana HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
THA.LOC109117094 Tarenaya hassleriana HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
TWI53G0713 Tripterygium wilfordii HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
HPP92_005153 Vanilla planifolia HOM05D004184 ORTHO05D004863 1.0e-17 93.2 47 93.6
Atru.chr3.3614 Acer truncatum HOM05D004184 ORTHO05D004863 1.4e-17 92.8 47 93.6
BcaB02g08018 Brassica carinata HOM05D004184 ORTHO05D004863 1.4e-17 92.8 47 93.6
DCAR_018804 Daucus carota HOM05D004184 ORTHO05D004863 1.4e-17 92.8 58 77.6
CBR_g26311 Chara braunii HOM05D004184 ORTHO05D004863 1.8e-17 92.4 47 93.6
Cre17.g725050 Chlamydomonas reinhardtii HOM05D004184 ORTHO05D004863 1.8e-17 92.4 47 93.6
Thhalv10002757m.g Eutrema salsugineum HOM05D004184 ORTHO05D004863 1.8e-17 92.4 47 93.6
Medtr3g084140 Medicago truncatula HOM05D004184 ORTHO05D004863 1.8e-17 92.4 47 93.6
Os11g0145400 Oryza sativa ssp. japonica HOM05D004184 ORTHO05D004863 1.8e-17 92.4 47 93.6
Os12g0143100 Oryza sativa ssp. japonica HOM05D004184 ORTHO05D004863 1.8e-17 92.4 47 93.6
Pp3c3_27450 Physcomitrium patens HOM05D004184 ORTHO05D004863 1.8e-17 92.4 47 93.6
Ah.02g113080 Amaranthus hybridus HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
EL10Ac6g13388 Beta vulgaris HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
EL10Ac6g15231 Beta vulgaris HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
EL10Ac9g22532 Beta vulgaris HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
CANSAT56G0430 Cannabis sativa HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
CANSAT56G0757 Cannabis sativa HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
CANSAT56G0833 Cannabis sativa HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
CANSAT56G3079 Cannabis sativa HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
CAN.G219.65 Capsicum annuum HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
AUR62035681 Chenopodium quinoa HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 93.6
FvH4_6g15950 Fragaria vesca HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
FAN02G1153 Fragaria x ananassa HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
FAN02G3659 Fragaria x ananassa HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
FAN05G1209 Fragaria x ananassa HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
FAN09G4380 Fragaria x ananassa HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
FAN14G0292 Fragaria x ananassa HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
Lsat_1_v5_gn_2_112360 Lactuca sativa HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 93.6
Manes.11G146400 Manihot esculenta HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
MCO15G432 Micromonas commoda HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
Nitab4.5_0000707g0150 Nicotiana tabacum HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
Nitab4.5_0004053g0030 Nicotiana tabacum HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
QL01p021954 Quercus lobata HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
RcHm_v2.0_Chr3g0469651 Rosa chinensis HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
SMO347G0051 Selaginella moellendorffii HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
Solyc01g087620.3 Solanum lycopersicum HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
Sopen01g034590 Solanum pennellii HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 91.5
vmacro07069 Vaccinium macrocarpon HOM05D004184 ORTHO05D004863 2.3e-17 92.0 47 93.6
Gohir.A08G198700 Gossypium hirsutum HOM05D004184 ORTHO05D004863 3.0e-17 91.7 47 91.5
Mapoly0065s0096 Marchantia polymorpha HOM05D004184 ORTHO05D004863 3.0e-17 91.7 47 91.5
AagrBONN_evm.TU.Sc2ySwM_369.241 Anthoceros agrestis HOM05D004184 ORTHO05D004863 4.0e-17 91.3 58 77.6
AL5G23710 Arabidopsis lyrata HOM05D004184 ORTHO05D004863 4.0e-17 91.3 47 91.5
HanXRQChr14g0452711 Helianthus annuus HOM05D004184 ORTHO05D004863 4.0e-17 91.3 58 77.6
Lj3g0017390 Lotus japonicus HOM05D004184 ORTHO05D004863 4.0e-17 91.3 47 91.5
MD03G1119300 Malus domestica HOM05D004184 ORTHO05D004863 4.0e-17 91.3 47 91.5
PSO339G1327 Papaver somniferum HOM05D004184 ORTHO05D004863 4.0e-17 91.3 46 93.5
Potri.004G211600 Populus trichocarpa HOM05D004184 ORTHO05D004863 4.0e-17 91.3 47 91.5
AT3G45180 Arabidopsis thaliana HOM05D004184 ORTHO05D004863 5.2e-17 90.9 47 91.5
FvH4_3g32020 Fragaria vesca HOM05D004184 ORTHO05D004863 5.2e-17 90.9 47 89.4
MD04G1097200 Malus domestica HOM05D004184 ORTHO05D004863 5.2e-17 90.9 47 89.4
MD12G1118400 Malus domestica HOM05D004184 ORTHO05D004863 5.2e-17 90.9 47 89.4
Prupe.6G236300 Prunus persica HOM05D004184 ORTHO05D004863 5.2e-17 90.9 47 89.4
Thecc.09G341900 Theobroma cacao HOM05D004184 ORTHO05D004863 5.2e-17 90.9 47 91.5
TPR.G11596 Trifolium pratense HOM05D004184 ORTHO05D004863 5.2e-17 90.9 47 91.5
Cpa.g.sc65.3 Carica papaya HOM05D004184 ORTHO05D004863 6.8e-17 90.5 47 91.5
SEGI_23705 Sequoiadendron giganteum HOM05D004184 ORTHO05D004863 8.8e-17 90.1 47 89.4
COL.COLO4_18323 Corchorus olitorius HOM05D004184 ORTHO05D004863 1.2e-16 89.7 47 89.4
Duzib170G0173 Durio zibethinus HOM05D004184 ORTHO05D004863 2.0e-16 89.0 47 87.2
FAN25G3531 Fragaria x ananassa HOM05D004184 ORTHO05D004863 2.0e-16 89.0 47 87.2
Lsat_1_v5_gn_1_64121 Lactuca sativa HOM05D004184 ORTHO05D004863 2.0e-16 89.0 46 93.5
CsaV3_1G014010 Cucumis sativus L. HOM05D004184 ORTHO05D004863 2.6e-16 88.6 46 93.5
FAN11G0673 Fragaria x ananassa HOM05D004184 ORTHO05D004863 4.4e-16 87.8 47 87.2
HPP92_028504 Vanilla planifolia HOM05D004184 ORTHO05D004863 4.4e-16 87.8 47 91.5
QL07p044403 Quercus lobata HOM05D004184 ORTHO05D004863 5.7e-16 87.4 47 89.4
Gohir.A10G205366 Gossypium hirsutum HOM05D004184 ORTHO05D004863 1.3e-15 86.3 46 91.3
FAN16G0267 Fragaria x ananassa HOM05D004184 ORTHO05D004863 2.2e-15 85.5 54 77.8
Actinidia06768 Actinidia chinensis HOM05D004184 ORTHO05D004863 2.8e-15 85.1 43 95.3
Peaxi162Scf00694g00018 Petunia axillaris HOM05D004184 ORTHO05D004863 1.1e-14 83.2 59 71.2
Cpa.g.sc3.475 Carica papaya HOM05D004184 ORTHO05D004863 1.8e-14 82.4 58 65.5
arahy.Tifrunner.gnm1.ann1.M3R4HC Arachis hypogaea HOM05D004184 ORTHO05D004863 1.3e-12 76.3 38 94.7
CARHR150790 Cardamine hirsuta HOM05D004184 ORTHO05D004863 2.8e-10 68.6 34 91.2
Sc15g0001480 Simmondsia chinensis HOM05D004184 ORTHO05D004863 3.6e-10 68.2 35 88.6
SGA_v2.0_scaffold93G28322 Striga asiatica HOM05D004184 ORTHO05D004863 4.1e-06 54.7 29 86.2


User provided reference genes

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