Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 0.0e+00 1142.1 607 100.0
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 9.4e-230 800.4 598 72.7
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 6.4e-162 575.1 433 77.1
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 5.4e-153 545.4 567 54.1
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 3.2e-145 519.6 434 70.7
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 2.3e-143 513.5 598 51.2
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 6.6e-143 511.9 587 51.4
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 1.3e-141 507.7 537 54.4
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 4.0e-140 502.7 542 53.9
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 5.3e-140 502.3 543 52.9
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 2.6e-139 500.0 542 54.1
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 2.6e-139 500.0 542 54.1
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 2.2e-138 496.9 555 52.4
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 5.4e-137 492.3 607 49.3
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 7.1e-137 491.9 542 52.4
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.3e-135 487.6 542 52.2
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 9.6e-134 481.5 613 47.8
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 1.6e-133 480.7 542 51.8
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 6.2e-133 478.8 414 62.8
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 4.5e-131 472.6 549 49.9
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 1.1e-129 468.0 554 50.2
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 2.3e-127 460.3 534 51.7
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 2.5e-126 456.8 555 49.0
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 4.3e-126 456.1 548 49.1
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 1.3e-125 454.5 550 50.0
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 1.1e-124 451.4 546 48.9
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 1.5e-123 447.6 548 48.9
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 2.0e-123 447.2 515 49.7
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 2.6e-123 446.8 562 47.0
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 5.8e-123 445.7 581 46.3
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 5.8e-123 445.7 541 49.0
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 8.4e-122 441.8 533 50.1
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 5.5e-121 439.1 429 55.9
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.2e-120 438.0 514 49.8
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 2.7e-120 436.8 534 47.4
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 2.7e-120 436.8 536 47.6
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 6.1e-120 435.6 411 58.2
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 7.9e-120 435.3 541 48.2
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 2.3e-119 433.7 544 47.6
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 2.5e-118 430.3 553 47.4
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 4.3e-118 429.5 555 47.6
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 5.7e-118 429.1 534 48.7
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 7.4e-118 428.7 615 44.1
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 1.3e-117 427.9 589 45.2
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 1.6e-117 427.6 554 47.7
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 6.3e-117 425.6 547 45.9
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 4.1e-116 422.9 577 44.5
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 6.9e-116 422.2 557 46.1
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 6.9e-116 422.2 518 46.5
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 1.3e-114 417.9 538 47.8
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 3.8e-114 416.4 431 55.2
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 5.0e-114 416.0 519 45.7
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 3.2e-113 413.3 545 45.9
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 4.2e-113 412.9 538 45.9
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 5.5e-113 412.5 431 52.4
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 9.4e-113 411.8 464 50.9
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 1.2e-112 411.4 542 48.2
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.7e-112 410.2 602 44.0
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 3.6e-112 409.8 559 44.9
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 1.0e-111 408.3 539 43.6
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 3.0e-111 406.8 618 42.2
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 3.9e-111 406.4 549 45.4
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 6.7e-111 405.6 412 52.7
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.1e-110 404.8 542 45.9
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 2.5e-110 403.7 526 46.2
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 1.3e-109 401.4 516 48.6
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 2.2e-109 400.6 615 42.0
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 2.8e-109 400.2 538 47.0
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 8.2e-109 398.7 554 44.4
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.8e-108 397.5 555 43.2
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 2.6e-107 393.7 546 44.5
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 3.4e-107 393.3 537 44.7
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 4.5e-107 392.9 533 45.6
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 5.0e-106 389.4 572 43.5
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 4.2e-105 386.3 555 43.6
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 6.1e-104 382.5 405 51.6
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 1.3e-101 374.8 540 43.3
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 4.8e-101 372.9 447 48.8
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 8.2e-101 372.1 592 41.6
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 1.2e-99 368.2 355 54.6
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.0e-99 367.5 598 40.6
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 2.6e-99 367.1 580 41.0
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 2.7e-96 357.1 505 44.6
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 2.7e-96 357.1 537 42.1
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 8.0e-96 355.5 539 41.7
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.0e-95 355.1 539 41.9
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 6.7e-95 352.4 526 42.0
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 8.8e-95 352.1 545 39.3
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.3e-94 350.1 423 46.8
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 6.3e-93 345.9 530 41.3
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 1.6e-91 341.3 538 41.3
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 2.0e-91 340.9 519 39.7
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 1.0e-90 338.6 423 50.6
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 8.5e-90 335.5 539 39.5
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 1.1e-89 335.1 541 39.0
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 1.2e-88 331.6 540 39.6
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 2.1e-88 330.9 544 39.7
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 2.1e-88 330.9 544 39.7
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 3.6e-88 330.1 609 39.4
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 8.8e-87 325.5 535 39.6
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 6.3e-85 319.3 533 37.9
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 3.1e-84 317.0 536 37.7
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 4.1e-84 316.6 539 39.1
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 9.1e-84 315.5 510 37.8
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 7.7e-83 312.4 550 39.5
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 8.5e-82 308.9 470 43.4
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 1.8e-79 301.2 539 37.5
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 2.3e-79 300.8 549 38.1
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 4.1e-76 290.0 541 37.0
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 1.1e-73 282.0 372 48.1
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 9.5e-73 278.9 239 58.6
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 5.6e-65 253.1 397 45.8
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 8.0e-64 249.2 547 34.6
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 5.6e-57 226.5 328 43.9
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.6e-54 217.6 325 46.2
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 5.8e-54 216.5 222 52.3
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 4.1e-52 210.3 383 38.6
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 3.0e-50 204.1 166 60.2
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 1.4e-47 195.3 236 46.6
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 4.1e-44 183.7 429 34.7
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 1.3e-42 178.7 371 35.8
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 1.5e-41 175.3 316 34.5
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 3.6e-40 170.6 139 60.4
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 4.6e-35 153.7 293 32.4
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 4.6e-35 153.7 330 31.5
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 8.1e-32 142.9 352 31.0
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 9.9e-30 136.0 227 34.4
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 6.4e-29 133.3 155 52.3
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.0e-26 125.9 282 29.8
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 6.6e-26 123.2 88 62.5
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 6.6e-26 123.2 88 62.5
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 1.9e-25 121.7 213 34.3
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 5.3e-23 113.6 134 44.0
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 9.0e-23 112.8 258 32.6
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.1e-19 101.7 153 49.0
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 4.6e-19 100.5 258 30.2
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 4.6e-19 100.5 258 30.2
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 1.8e-18 98.6 258 30.2
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 1.8e-18 98.6 258 30.2
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 1.8e-18 98.6 258 30.2
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.3e-18 98.2 131 47.3
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 4.8e-16 90.5 296 24.7
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 6.5e-13 80.1 258 25.2
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 9.0e-07 59.7 57 47.4


User provided reference genes

Program Settings