Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 0.0e+00 1282.3 648 100.0
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 0.0e+00 1151.7 649 90.4
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 1.8e-255 885.9 663 67.0
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 3.2e-252 875.2 666 68.2
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 5.1e-250 867.8 665 67.7
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 8.7e-250 867.1 665 66.0
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 9.9e-246 853.6 667 65.2
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 4.6e-243 844.7 663 64.7
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 1.1e-241 840.1 666 64.6
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 1.6e-240 836.3 663 64.6
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 1.8e-239 832.8 667 65.1
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 1.2e-238 830.1 662 63.7
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 6.5e-237 824.3 659 64.6
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 8.4e-237 823.9 660 62.9
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 7.1e-236 820.8 663 62.9
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 9.3e-236 820.5 663 62.9
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 7.9e-235 817.4 663 63.0
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 2.3e-234 815.8 664 64.0
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 4.3e-233 811.6 660 63.0
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 7.4e-233 810.8 665 63.0
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 2.8e-232 808.9 663 62.7
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 2.2e-229 799.3 663 61.5
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 3.8e-229 798.5 668 61.4
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 2.1e-227 792.7 668 61.1
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 3.6e-227 792.0 662 61.9
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 7.9e-227 790.8 665 62.7
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 2.3e-226 789.3 663 62.1
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 3.0e-226 788.9 670 61.8
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.9e-225 786.2 667 62.2
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 3.3e-225 785.4 668 59.7
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 9.7e-225 783.9 668 61.2
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 2.8e-224 782.3 659 60.4
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 1.4e-223 780.0 663 61.4
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 1.8e-223 779.6 667 61.5
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 2.4e-223 779.2 669 60.5
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 3.1e-223 778.9 666 62.2
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 2.6e-222 775.8 669 60.8
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 4.5e-222 775.0 667 59.5
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.3e-221 773.5 666 61.4
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 1.3e-221 773.5 664 60.2
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 2.9e-221 772.3 667 60.1
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 3.8e-221 771.9 667 60.1
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 5.0e-221 771.5 667 60.4
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 4.2e-220 768.5 662 59.5
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 5.5e-220 768.1 666 60.7
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 7.2e-220 767.7 674 59.9
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 2.1e-219 766.1 666 60.4
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 2.1e-219 766.1 667 59.7
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 4.6e-219 765.0 662 59.4
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 4.6e-219 765.0 668 59.3
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 1.8e-218 763.1 654 60.1
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 5.1e-218 761.5 657 60.4
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 5.1e-218 761.5 659 60.4
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 1.1e-217 760.4 663 59.1
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 1.1e-217 760.4 658 58.8
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 1.7e-216 756.5 666 59.2
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 2.8e-216 755.7 661 59.6
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 9.1e-215 750.7 686 57.6
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 5.9e-214 748.0 662 59.1
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 1.3e-213 746.9 666 60.4
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 2.9e-213 745.7 660 59.1
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 5.0e-213 745.0 660 58.9
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 6.5e-213 744.6 658 56.2
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 8.5e-213 744.2 667 57.9
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 1.9e-212 743.0 664 58.9
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 1.9e-212 743.0 660 58.9
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 1.9e-212 743.0 664 58.9
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 3.2e-212 742.3 663 58.4
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 5.5e-212 741.5 669 58.1
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 1.2e-211 740.3 637 60.9
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 2.1e-211 739.6 656 58.1
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 2.7e-211 739.2 667 57.4
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 1.0e-210 737.3 654 58.0
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 3.9e-210 735.3 666 59.2
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 2.0e-209 733.0 678 57.7
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 2.6e-209 732.6 637 59.7
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 7.4e-209 731.1 658 58.7
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 2.8e-208 729.2 646 59.1
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 2.9e-205 719.2 661 57.2
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 8.5e-205 717.6 670 57.0
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 7.2e-204 714.5 664 57.4
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 3.0e-202 709.1 661 55.2
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 1.2e-201 707.2 661 57.2
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 4.4e-201 705.3 661 58.1
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 1.1e-199 700.7 664 56.2
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 1.4e-199 700.3 665 57.0
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 3.2e-196 689.1 666 54.1
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 2.7e-195 686.0 662 55.4
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 6.1e-195 684.9 655 56.5
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 1.2e-193 680.6 653 52.5
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 2.2e-192 676.4 669 52.9
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 1.1e-183 647.5 688 50.3
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 7.0e-183 644.8 663 54.4
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 7.8e-182 641.3 512 64.8
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 4.3e-180 635.6 652 53.5
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 7.3e-180 634.8 659 50.2
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 2.3e-178 629.8 654 52.0
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 1.4e-175 620.5 661 51.0
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.4e-167 593.2 495 60.4
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 7.6e-137 491.9 419 60.6
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 1.4e-130 471.1 526 48.3
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 1.4e-127 461.1 483 49.9
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 4.3e-124 449.5 621 43.3
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 3.4e-121 439.9 358 61.7
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 7.6e-121 438.7 667 38.8
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 6.7e-117 425.6 343 62.1
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 4.8e-115 419.5 643 37.8
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 8.5e-104 382.1 652 36.7
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 8.0e-94 349.0 496 41.1
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 2.3e-85 320.9 276 58.0
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 3.3e-84 317.0 291 55.7
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 8.2e-83 312.4 364 47.5
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 7.5e-76 289.3 768 28.8
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 5.4e-74 283.1 349 45.0
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 2.8e-67 260.8 704 29.5
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 7.5e-60 236.1 271 48.7
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 3.7e-59 233.8 284 46.1
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 3.3e-47 194.1 222 51.8
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 5.4e-34 150.2 232 38.4
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 5.6e-31 140.2 81 74.1
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.6e-25 122.1 134 44.0
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 7.8e-25 119.8 214 33.6
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 1.4e-21 109.0 86 52.3
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 3.1e-21 107.8 101 55.4
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 4.0e-21 107.5 65 83.1
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 2.6e-20 104.8 126 51.6
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 2.9e-19 101.3 80 62.5
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 4.9e-19 100.5 154 35.7
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 4.9e-19 100.5 219 32.0
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 1.4e-18 99.0 211 31.3
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.9e-18 98.6 75 64.0
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 2.5e-15 88.2 97 51.5
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 3.7e-14 84.3 67 61.2
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 1.9e-10 72.0 88 44.3
VMungo1215G1513 Vigna mungo HOM05D005402 ORTHO05D433923 1.6e-06 58.9 41 75.6


User provided reference genes

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