Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0190100 Salix brachista HOM05D008234 ORTHO05D010422 8.9e-211 736.9 427 100.0
Potri.006G243000 Populus trichocarpa HOM05D008234 ORTHO05D010422 2.2e-153 546.2 427 80.1
Manes.03G062500 Manihot esculenta HOM05D008234 ORTHO05D010422 2.3e-113 413.3 404 65.6
Dinv14224 Davidia involucrata HOM05D008234 ORTHO05D010422 1.7e-108 397.1 426 53.1
TWI34G1157 Tripterygium wilfordii HOM05D008234 ORTHO05D010422 6.4e-100 368.6 365 55.6
QL12p026340 Quercus lobata HOM05D008234 ORTHO05D010422 1.4e-99 367.5 428 58.2
Prupe.1G453000 Prunus persica HOM05D008234 ORTHO05D010422 4.0e-94 349.4 410 51.0
CiPaw.08G023300 Carya illinoinensis HOM05D008234 ORTHO05D010422 1.5e-93 347.4 422 57.3
Actinidia31219 Actinidia chinensis HOM05D008234 ORTHO05D010422 7.6e-93 345.1 388 49.2
Aqoxy7G03839 Aquilegia oxysepala HOM05D008234 ORTHO05D010422 2.1e-90 337.0 395 56.7
RcHm_v2.0_Chr6g0305711 Rosa chinensis HOM05D008234 ORTHO05D010422 3.3e-88 329.7 403 54.3
Lj1g0008618 Lotus japonicus HOM05D008234 ORTHO05D010422 4.3e-88 329.3 404 46.3
GSVIVG01035674001 Vitis vinifera HOM05D008234 ORTHO05D010422 3.4e-85 319.7 425 54.6
TAR626G1903 Trochodendron aralioides HOM05D008234 ORTHO05D010422 1.7e-84 317.4 419 48.2
SGA_v2.0_scaffold185G40113 Striga asiatica HOM05D008234 ORTHO05D010422 8.4e-84 315.1 403 43.4
Ciclev10008407m.g Citrus clementina HOM05D008234 ORTHO05D010422 3.2e-83 313.2 416 56.0
Thecc.03G110200 Theobroma cacao HOM05D008234 ORTHO05D010422 3.2e-83 313.2 426 53.8
MD08G1118800 Malus domestica HOM05D008234 ORTHO05D010422 4.6e-82 309.3 425 55.1
MSTRG.25893 Avicennia marina HOM05D008234 ORTHO05D010422 6.6e-81 305.4 389 44.2
Ca_12814_v3 Cicer arietinum L. HOM05D008234 ORTHO05D010422 6.6e-81 305.4 392 44.9
Medtr1g008360 Medicago truncatula HOM05D008234 ORTHO05D010422 6.6e-81 305.4 391 56.3
Cc08_g08970 Coffea canephora HOM05D008234 ORTHO05D010422 1.5e-80 304.3 379 54.1
Hma1.2p1_1255F.1_g270650 Hydrangea macrophylla HOM05D008234 ORTHO05D010422 2.5e-80 303.5 330 49.4
Duzib068G0878 Durio zibethinus HOM05D008234 ORTHO05D010422 4.3e-80 302.8 426 52.3
FAN20G2600 Fragaria x ananassa HOM05D008234 ORTHO05D010422 1.1e-78 298.1 368 45.4
Hund19548 Selenicereus undatus HOM05D008234 ORTHO05D010422 1.4e-78 297.7 401 50.9
CDE04G1659 Ceratophyllum demersum HOM05D008234 ORTHO05D010422 4.0e-78 296.2 385 42.6
Lj7P707T11 Lonicera japonica HOM05D008234 ORTHO05D010422 4.0e-78 296.2 331 46.5
TPR.G12012 Trifolium pratense HOM05D008234 ORTHO05D010422 5.3e-78 295.8 383 45.4
Migut.A00244 Erythranthe guttata HOM05D008234 ORTHO05D010422 4.5e-77 292.7 389 42.4
Gohir.A03G071900 Gossypium hirsutum HOM05D008234 ORTHO05D010422 2.2e-76 290.4 323 60.7
Lsat_1_v5_gn_6_11021 Lactuca sativa HOM05D008234 ORTHO05D010422 4.9e-76 289.3 374 43.0
Ah.16g105160 Amaranthus hybridus HOM05D008234 ORTHO05D010422 6.4e-76 288.9 411 40.4
FAN15G0125 Fragaria x ananassa HOM05D008234 ORTHO05D010422 6.4e-76 288.9 368 56.0
CSS0041765 Camellia sinensis var. sinensis HOM05D008234 ORTHO05D010422 3.5e-74 283.1 433 51.3
HanXRQChr02g0048071 Helianthus annuus HOM05D008234 ORTHO05D010422 2.3e-73 280.4 382 42.4
FvH4_2g36160 Fragaria vesca HOM05D008234 ORTHO05D010422 2.5e-72 276.9 367 54.8
SalBow4G0332 Salvia bowleyana HOM05D008234 ORTHO05D010422 4.3e-72 276.2 386 42.5
COL.COLO4_28841 Corchorus olitorius HOM05D008234 ORTHO05D010422 9.0e-70 268.5 369 52.8
AUR62023021 Chenopodium quinoa HOM05D008234 ORTHO05D010422 1.3e-68 264.6 417 40.0
Glyma.14G141400 Glycine max HOM05D008234 ORTHO05D010422 2.2e-68 263.8 383 44.1
Cfa013340 Carpinus fangiana HOM05D001758 ORTHO05D005969 5.5e-67 259.2 334 56.3
Psat6g034200 Pisum sativum HOM05D008234 ORTHO05D010422 2.1e-66 257.3 395 41.0
Phvul.001G078800 Phaseolus vulgaris HOM05D008234 ORTHO05D010422 3.0e-65 253.4 389 45.0
EL10Ac2g04079 Beta vulgaris HOM05D008234 ORTHO05D010422 2.1e-63 247.3 452 44.0
Psat6g034160 Pisum sativum HOM05D008234 ORTHO05D010422 1.4e-59 234.6 395 39.2
Haze_21845 Corylus avellana HOM05D008234 ORTHO05D010422 5.5e-59 232.6 334 54.5
ATR0697G092 Amborella trichopoda HOM05D008234 ORTHO05D010422 2.7e-58 230.3 403 35.2
Oeu011264.1 Olea europaea HOM05D008234 ORTHO05D010422 2.7e-58 230.3 296 57.1
Zm00001eb004480 Zea mays HOM05D008234 ORTHO05D010422 4.6e-58 229.6 377 35.3
Gorai.003G103400 Gossypium raimondii HOM05D008234 ORTHO05D001322 3.3e-56 223.4 287 57.8
Os03g0159700 Oryza sativa ssp. japonica HOM05D008234 ORTHO05D010422 1.8e-54 217.6 395 33.9
unitig_27.g25079 Utricularia gibba HOM05D006621 ORTHO05D008425 1.7e-52 211.1 401 43.4
MELO3C003586.2 Cucumis melo HOM05D008234 ORTHO05D010422 1.4e-51 208.0 325 40.6
Nn2g11729 Nelumbo nucifera HOM05D008234 ORTHO05D010422 1.9e-51 207.6 420 45.0
CsaV3_3G047390 Cucumis sativus L. HOM05D008234 ORTHO05D010422 6.1e-50 202.6 319 40.8
ECA233G2242 Erigeron canadensis HOM05D008234 ORTHO05D010422 7.9e-50 202.2 292 39.4
Gohir.D03G098600 Gossypium hirsutum HOM05D008234 ORTHO05D010422 6.7e-49 199.1 207 54.1
AUR62009335 Chenopodium quinoa HOM05D008234 ORTHO05D010422 1.4e-46 191.4 290 35.9
HPP92_009609 Vanilla planifolia HOM05D008234 ORTHO05D010422 4.1e-46 189.9 344 32.8
Gohir.D03G098650 Gossypium hirsutum HOM05D008234 ORTHO05D010422 2.0e-37 161.0 137 60.6
ClCG11G014000 Citrullus lanatus HOM05D008234 ORTHO05D010422 2.9e-36 157.1 224 38.4
SEGI_11609 Sequoiadendron giganteum HOM05D008234 ORTHO05D010422 2.0e-29 134.4 284 30.6
AagrBONN_evm.TU.Sc2ySwM_369.313 Anthoceros agrestis HOM05D005775 ORTHO05D000023 1.1e-11 75.5 362 32.9
Medtr8g091670 Medicago truncatula HOM05D006414 ORTHO05D007780 5.2e-09 66.6 100 40.0
FAN20G1843 Fragaria x ananassa HOM05D005775 ORTHO05D000023 1.2e-08 65.5 163 31.3
TPR.G2171 Trifolium pratense HOM05D006414 ORTHO05D007780 1.5e-08 65.1 100 40.0
Pp3c2_3210 Physcomitrium patens HOM05D005775 ORTHO05D000023 2.0e-08 64.7 393 31.0
Sabra05G0067400 Salix brachista HOM05D006414 ORTHO05D007780 2.0e-08 64.7 100 41.0
Manes.12G140500 Manihot esculenta HOM05D006414 ORTHO05D007780 3.4e-08 63.9 100 40.0
Potri.005G082400 Populus trichocarpa HOM05D006414 ORTHO05D007780 4.4e-08 63.5 100 39.0
Rhsim01G0278600 Rhododendron simsii HOM05D005775 ORTHO05D000023 4.4e-08 63.5 355 34.6
Phvul.001G146400 Phaseolus vulgaris HOM05D005775 ORTHO05D000023 5.7e-08 63.2 120 31.7
Psat7g051760 Pisum sativum HOM05D006414 ORTHO05D007780 5.7e-08 63.2 100 40.0
ATR0487G016 Amborella trichopoda HOM05D005775 ORTHO05D000023 9.8e-08 62.4 345 30.7
Glyma.19G151700 Glycine max HOM05D005775 ORTHO05D000023 9.8e-08 62.4 179 29.6
Lalb_Chr07g0184891 Lupinus albus HOM05D006414 ORTHO05D007780 9.8e-08 62.4 100 38.0
Potri.016G119600 Populus trichocarpa HOM05D005775 ORTHO05D000023 9.8e-08 62.4 311 35.0
FAN27G3110 Fragaria x ananassa HOM05D005775 ORTHO05D000023 1.3e-07 62.0 330 33.0
SalBow6G5148 Salvia bowleyana HOM05D006414 ORTHO05D007780 1.3e-07 62.0 196 29.1
VMungo1383G3055 Vigna mungo HOM05D005775 ORTHO05D000023 1.3e-07 62.0 119 31.9
Aqoxy5G00981 Aquilegia oxysepala HOM05D006414 ORTHO05D007780 1.7e-07 61.6 100 39.0
Aqoxy6G00504 Aquilegia oxysepala HOM05D006414 ORTHO05D007780 1.7e-07 61.6 100 39.0
SalBow6G2882 Salvia bowleyana HOM05D006414 ORTHO05D007780 1.7e-07 61.6 196 29.1
SalBow6G7209 Salvia bowleyana HOM05D006414 ORTHO05D007780 1.7e-07 61.6 196 29.1
unitig_28.g29440 Utricularia gibba HOM05D006414 ORTHO05D007780 1.7e-07 61.6 100 38.0
Hma1.2p1_0209F.1_g089290 Hydrangea macrophylla HOM05D005775 ORTHO05D000023 2.9e-07 60.8 120 32.5
PSO215G0001 Papaver somniferum HOM05D006414 ORTHO05D007780 2.9e-07 60.8 100 37.0
RcHm_v2.0_Chr6g0292231 Rosa chinensis HOM05D005775 ORTHO05D000023 2.9e-07 60.8 152 29.6
SEGI_28259 Sequoiadendron giganteum HOM05D005775 ORTHO05D000023 2.9e-07 60.8 116 31.0
ATR0681G202 Amborella trichopoda HOM05D006414 ORTHO05D007780 3.7e-07 60.5 110 35.5
Nn1g05205 Nelumbo nucifera HOM05D006414 ORTHO05D007780 3.7e-07 60.5 100 39.0
Prupe.4G236100 Prunus persica HOM05D006414 ORTHO05D007780 3.7e-07 60.5 100 37.0
GSVIVG01022204001 Vitis vinifera HOM05D006414 ORTHO05D007780 3.7e-07 60.5 100 37.0
Cc07_g15860 Coffea canephora HOM05D006414 ORTHO05D007780 4.9e-07 60.1 100 38.0
FAN24G2890 Fragaria x ananassa HOM05D005775 ORTHO05D000023 4.9e-07 60.1 163 29.4
vmacro18623 Vaccinium macrocarpon HOM05D006414 ORTHO05D007780 4.9e-07 60.1 100 39.0
CANSAT25G1854 Cannabis sativa HOM05D005775 ORTHO05D000023 6.3e-07 59.7 119 31.9
CiPaw.04G093800 Carya illinoinensis HOM05D006414 ORTHO05D007780 6.3e-07 59.7 100 37.0
Glyma.08G140300 Glycine max HOM05D006414 ORTHO05D007780 6.3e-07 59.7 100 36.0
CSS0011059 Camellia sinensis var. sinensis HOM05D006414 ORTHO05D007780 8.3e-07 59.3 100 37.0
CSS0026013 Camellia sinensis var. sinensis HOM05D006414 ORTHO05D007780 8.3e-07 59.3 100 37.0
CDE10G1362 Ceratophyllum demersum HOM05D006414 ORTHO05D007780 8.3e-07 59.3 100 37.0
Ca_17703_v3 Cicer arietinum L. HOM05D006414 ORTHO05D007780 8.3e-07 59.3 175 31.4
Dinv19510 Davidia involucrata HOM05D006414 ORTHO05D007780 8.3e-07 59.3 100 39.0
Eucgr.I00342 Eucalyptus grandis HOM05D006414 ORTHO05D007780 8.3e-07 59.3 100 37.0
Eucgr.L02634 Eucalyptus grandis HOM05D006414 ORTHO05D007780 8.3e-07 59.3 100 37.0
Lj1g0019119 Lotus japonicus HOM05D005775 ORTHO05D000023 8.3e-07 59.3 340 32.9
CDE10G0169 Ceratophyllum demersum HOM05D006414 ORTHO05D007780 1.1e-06 58.9 100 37.0
MD03G1187700 Malus domestica HOM05D006414 ORTHO05D007780 1.1e-06 58.9 100 37.0
vmacro02530 Vaccinium macrocarpon HOM05D005775 ORTHO05D000023 1.1e-06 58.9 350 34.0
GSVIVG01011040001 Vitis vinifera HOM05D005775 ORTHO05D000023 1.1e-06 58.9 120 32.5
MD11G1203200 Malus domestica HOM05D006414 ORTHO05D007780 1.4e-06 58.5 100 37.0
Sc03g0004230 Simmondsia chinensis HOM05D006414 ORTHO05D007780 1.4e-06 58.5 100 34.0
AagrBONN_evm.TU.Sc2ySwM_117.627 Anthoceros agrestis HOM05D006414 ORTHO05D007780 1.8e-06 58.2 98 30.6
FvH4_4g12030 Fragaria vesca HOM05D006414 ORTHO05D007780 1.8e-06 58.2 100 36.0
FAN07G2537 Fragaria x ananassa HOM05D006414 ORTHO05D007780 1.8e-06 58.2 100 36.0
FAN12G1220 Fragaria x ananassa HOM05D006414 ORTHO05D007780 1.8e-06 58.2 100 36.0
FAN12G2815 Fragaria x ananassa HOM05D006414 ORTHO05D007780 1.8e-06 58.2 100 36.0
FAN15G0955 Fragaria x ananassa HOM05D005775 ORTHO05D000023 1.8e-06 58.2 163 28.8
Rhsim08G0008000 Rhododendron simsii HOM05D006414 ORTHO05D007780 1.8e-06 58.2 100 37.0
PGSC0003DMG400026158 Solanum tuberosum HOM05D005775 ORTHO05D000023 2.4e-06 57.8 117 28.2
AUR62003321 Chenopodium quinoa HOM05D006414 ORTHO05D007780 3.2e-06 57.4 100 37.0
AUR62016261 Chenopodium quinoa HOM05D006414 ORTHO05D007780 3.2e-06 57.4 100 37.0
AUR62043752 Chenopodium quinoa HOM05D006414 ORTHO05D007780 3.2e-06 57.4 100 37.0
COL.COLO4_11035 Corchorus olitorius HOM05D006414 ORTHO05D007780 3.2e-06 57.4 100 36.0
CsaV3_6G045830 Cucumis sativus L. HOM05D006414 ORTHO05D007780 3.2e-06 57.4 100 35.0
Dinv11278 Davidia involucrata HOM05D005775 ORTHO05D000023 3.2e-06 57.4 120 30.8
Dinv32979 Davidia involucrata HOM05D005775 ORTHO05D000023 3.2e-06 57.4 117 33.3
Glyma.05G182700 Glycine max HOM05D006414 ORTHO05D007780 3.2e-06 57.4 100 35.0
Lj4g0018166 Lotus japonicus HOM05D006414 ORTHO05D007780 3.2e-06 57.4 100 37.0
SalBow8G0663 Salvia bowleyana HOM05D000608 ORTHO05D007780 3.2e-06 57.4 196 27.6
SalBow8G2565 Salvia bowleyana HOM05D000608 ORTHO05D007780 3.2e-06 57.4 196 27.6
SHI15422 Sapria himalayana HOM05D005775 ORTHO05D000023 3.2e-06 57.4 328 19.2
VMungo0251G3283 Vigna mungo HOM05D006414 ORTHO05D007780 3.2e-06 57.4 100 35.0
Actinidia16042 Actinidia chinensis HOM05D006414 ORTHO05D007780 4.1e-06 57.0 199 29.1
Aqoxy2G03167 Aquilegia oxysepala HOM05D005775 ORTHO05D000023 4.1e-06 57.0 373 31.1
CDE10G1068 Ceratophyllum demersum HOM05D005775 ORTHO05D000023 4.1e-06 57.0 150 28.0
vmacro14952 Vaccinium macrocarpon HOM05D005775 ORTHO05D000023 4.1e-06 57.0 118 29.7
HPP92_016845 Vanilla planifolia HOM05D006414 ORTHO05D007780 4.1e-06 57.0 101 35.6
Ah.03g149270 Amaranthus hybridus HOM05D006414 ORTHO05D007780 5.4e-06 56.6 100 38.0
arahy.Tifrunner.gnm1.ann1.F90T56 Arachis hypogaea HOM05D006414 ORTHO05D007780 5.4e-06 56.6 100 34.0
Migut.H02413 Erythranthe guttata HOM05D006414 ORTHO05D007780 5.4e-06 56.6 197 28.9
Atru.chr4.307 Acer truncatum HOM05D006414 ORTHO05D007780 7.0e-06 56.2 100 35.0
MSTRG.2541 Avicennia marina HOM05D006414 ORTHO05D007780 7.0e-06 56.2 198 27.3
Haze_04786 Corylus avellana HOM05D005775 ORTHO05D000023 7.0e-06 56.2 406 31.3
Haze_14271 Corylus avellana HOM05D006414 ORTHO05D007780 7.0e-06 56.2 100 37.0
Lj2A560T64 Lonicera japonica HOM05D006414 ORTHO05D007780 7.0e-06 56.2 100 34.0
Aa31LG6G15650 Aethionema arabicum HOM05D006414 ORTHO05D007780 9.2e-06 55.8 100 35.0
EL10Ac6g14730 Beta vulgaris HOM05D006414 ORTHO05D007780 9.2e-06 55.8 100 35.0
Cpa.g.sc731.2 Carica papaya HOM05D005775 ORTHO05D000023 9.2e-06 55.8 127 31.5
ClCG01G019140 Citrullus lanatus HOM05D006414 ORTHO05D007780 9.2e-06 55.8 100 34.0
HanXRQChr07g0202341 Helianthus annuus HOM05D006414 ORTHO05D007780 9.2e-06 55.8 100 36.0
Mapoly0072s0009 Marchantia polymorpha HOM05D005775 ORTHO05D000023 9.2e-06 55.8 210 25.2
TAR376G1012 Trochodendron aralioides HOM05D006414 ORTHO05D007780 9.2e-06 55.8 100 35.0


User provided reference genes

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