Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 7.6e-250 866.7 432 100.0
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.3e-233 812.8 520 81.5
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 2.4e-224 781.9 520 77.5
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 1.3e-220 769.6 525 76.2
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 6.9e-219 763.8 521 76.0
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.5e-218 762.7 521 76.4
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 1.5e-218 762.7 529 75.0
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 2.6e-218 761.9 521 76.4
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 4.9e-217 757.7 521 76.0
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.1e-216 756.5 521 75.2
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.1e-216 756.5 521 75.4
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 9.3e-216 753.4 521 75.2
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 1.2e-215 753.1 521 75.2
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 2.1e-215 752.3 532 73.1
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 2.7e-215 751.9 521 74.7
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 4.6e-215 751.1 470 81.1
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 6.0e-215 750.7 520 74.8
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 1.8e-214 749.2 526 74.1
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 1.8e-214 749.2 523 74.4
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 1.8e-214 749.2 396 92.9
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 2.3e-214 748.8 483 78.9
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 6.7e-214 747.3 397 92.7
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 8.7e-214 746.9 520 75.0
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 1.1e-213 746.5 525 74.1
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 1.5e-213 746.1 522 73.9
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 2.5e-213 745.3 518 74.9
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 5.7e-213 744.2 520 74.4
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 7.4e-213 743.8 521 74.7
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 7.4e-213 743.8 520 74.2
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 1.3e-212 743.0 531 72.9
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.6e-212 742.7 525 73.3
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 2.8e-212 741.9 518 74.3
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 3.7e-212 741.5 397 91.9
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.1e-211 740.0 397 91.7
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.1e-211 740.0 397 91.7
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.1e-211 740.0 524 73.3
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 1.4e-211 739.6 528 73.1
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 1.8e-211 739.2 527 72.9
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 3.1e-211 738.4 525 73.0
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 5.3e-211 737.6 526 73.0
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 5.3e-211 737.6 528 72.7
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 2.6e-210 735.3 397 91.4
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 2.6e-210 735.3 397 91.4
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 4.5e-210 734.6 524 72.9
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 1.3e-209 733.0 528 72.7
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 1.7e-209 732.6 397 90.4
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 1.7e-209 732.6 397 90.2
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 2.2e-209 732.3 520 72.9
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 2.2e-209 732.3 397 90.7
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 5.0e-209 731.1 528 72.3
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 5.0e-209 731.1 565 69.2
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 5.0e-209 731.1 398 90.7
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 5.0e-209 731.1 526 72.4
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 1.4e-208 729.6 399 90.7
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 2.5e-208 728.8 397 89.7
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 5.5e-208 727.6 524 72.1
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 5.5e-208 727.6 524 72.1
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 5.5e-208 727.6 397 89.7
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 5.5e-208 727.6 530 71.7
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 5.5e-208 727.6 397 90.9
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 7.2e-208 727.2 397 89.4
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 9.4e-208 726.9 397 89.4
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.2e-207 726.5 397 90.2
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.6e-207 726.1 397 89.2
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 2.1e-207 725.7 524 72.1
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 2.7e-207 725.3 397 89.9
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 2.7e-207 725.3 554 69.9
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 3.6e-207 724.9 397 90.7
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 3.6e-207 724.9 397 89.4
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 4.6e-207 724.5 397 90.7
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 4.6e-207 724.5 520 71.7
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 6.1e-207 724.2 521 72.0
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 7.9e-207 723.8 396 89.4
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 7.9e-207 723.8 520 71.7
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 7.9e-207 723.8 520 71.7
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.0e-206 723.4 520 72.1
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 1.8e-206 722.6 524 71.8
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 1.8e-206 722.6 524 71.8
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 1.8e-206 722.6 397 90.4
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 1.8e-206 722.6 528 71.8
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 2.3e-206 722.2 522 71.3
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 3.0e-206 721.8 397 89.7
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 3.0e-206 721.8 397 89.9
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 6.7e-206 720.7 395 88.4
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 8.8e-206 720.3 398 88.2
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 4.3e-205 718.0 397 89.4
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 1.3e-204 716.5 397 88.2
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 2.2e-204 715.7 397 89.2
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 2.8e-204 715.3 522 70.3
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 3.7e-204 714.9 397 88.2
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 4.8e-204 714.5 527 69.6
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 6.3e-204 714.1 397 88.2
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.8e-203 712.6 421 84.1
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 9.1e-203 710.3 532 69.7
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 9.1e-203 710.3 397 87.9
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 1.0e-201 706.8 524 71.2
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.3e-201 706.4 522 69.9
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 3.8e-201 704.9 524 70.8
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 5.0e-201 704.5 397 86.4
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 8.5e-201 703.7 397 88.4
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 8.5e-201 703.7 395 86.6
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 1.6e-199 699.5 408 85.0
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 3.9e-198 694.9 379 90.0
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 8.8e-198 693.7 398 86.2
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 8.8e-198 693.7 398 86.2
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 7.4e-197 690.6 397 82.1
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 9.7e-197 690.3 383 88.3
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.7e-196 689.5 511 69.3
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.4e-195 686.4 396 82.8
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 3.3e-189 665.2 403 84.9
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 1.3e-188 663.3 419 81.1
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 3.7e-188 661.8 397 78.8
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 1.1e-187 660.2 436 78.7
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 1.6e-186 656.4 397 78.6
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 1.0e-185 653.7 520 66.3
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 1.3e-185 653.3 382 84.0
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 1.1e-184 650.2 398 82.2
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 2.5e-184 649.0 397 77.6
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 9.4e-184 647.1 398 78.1
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 3.6e-183 645.2 397 76.1
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 8.8e-182 640.6 458 73.4
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 7.5e-181 637.5 397 76.8
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 2.2e-180 636.0 344 90.4
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.8e-174 616.3 397 73.3
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.3e-172 610.1 397 72.3
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.7e-172 609.8 397 71.8
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.9e-168 596.3 397 70.0
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 4.3e-160 568.5 355 80.6
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 1.8e-158 563.1 395 67.1
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 5.2e-158 561.6 397 69.0
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 2.6e-149 532.7 375 68.3
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 1.1e-147 527.3 410 62.2
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 1.8e-142 510.0 275 92.4
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 3.1e-126 456.1 327 73.1
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 1.2e-125 454.1 285 81.1
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 4.9e-108 395.6 395 49.4
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 1.0e-100 371.3 397 53.1
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 9.3e-99 364.8 418 47.8
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 4.6e-90 335.9 406 46.1
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 4.3e-88 329.3 292 61.0
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 5.3e-86 322.4 165 92.1
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 7.0e-78 295.4 452 36.7
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 1.5e-51 208.0 269 47.6
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 7.2e-51 205.7 320 42.8
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 1.5e-40 171.4 93 88.2
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 3.6e-34 150.2 193 46.6
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 5.8e-32 142.9 79 86.1
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 4.4e-24 116.7 68 77.9
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 2.9e-15 87.4 72 62.5
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 3.0e-12 77.4 125 41.6
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 6.6e-12 76.3 48 68.8
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 9.0e-09 65.9 35 82.9


User provided reference genes

Program Settings