Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0182600 Salix brachista HOM05D004028 ORTHO05D004844 3.3e-203 711.4 350 100.0
Potri.001G175600 Populus trichocarpa HOM05D004028 ORTHO05D004844 6.2e-93 345.1 520 43.1
Sabra01G0136900 Salix brachista HOM05D004028 ORTHO05D004844 6.2e-93 345.1 521 42.2
Manes.04G119500 Manihot esculenta HOM05D004028 ORTHO05D004844 9.3e-81 304.7 522 39.5
COL.COLO4_12855 Corchorus olitorius HOM05D004028 ORTHO05D004844 1.6e-77 293.9 549 36.8
FAN14G3012 Fragaria x ananassa HOM05D004028 ORTHO05D004844 4.5e-75 285.8 461 37.5
Duzib235G0948 Durio zibethinus HOM05D004028 ORTHO05D004844 8.4e-74 281.6 522 36.8
TWI12G0252 Tripterygium wilfordii HOM05D004028 ORTHO05D004844 1.1e-73 281.2 543 35.7
Haze_16483 Corylus avellana HOM05D004028 ORTHO05D004844 1.4e-73 280.8 545 36.0
Prupe.3G076900 Prunus persica HOM05D004028 ORTHO05D004844 2.5e-73 280.0 523 36.9
FAN05G3865 Fragaria x ananassa HOM05D004028 ORTHO05D004844 3.0e-71 273.1 522 34.9
Cfa002035 Carpinus fangiana HOM05D004028 ORTHO05D004844 5.1e-71 272.3 545 34.9
FvH4_6g30720 Fragaria vesca HOM05D004028 ORTHO05D004844 5.1e-71 272.3 522 34.5
FAN09G1065 Fragaria x ananassa HOM05D004028 ORTHO05D004844 5.1e-71 272.3 522 34.5
QL05p026783 Quercus lobata HOM05D004028 ORTHO05D004844 6.7e-71 271.9 543 35.0
Thecc.06G077900 Theobroma cacao HOM05D004028 ORTHO05D004844 1.1e-70 271.2 549 35.3
RcHm_v2.0_Chr2g0137111 Rosa chinensis HOM05D004028 ORTHO05D004844 3.3e-70 269.6 522 34.3
Dinv30549 Davidia involucrata HOM05D004028 ORTHO05D004844 4.3e-70 269.2 522 36.6
CiPaw.01G242300 Carya illinoinensis HOM05D004028 ORTHO05D004844 1.3e-69 267.7 518 34.7
FAN02G4155 Fragaria x ananassa HOM05D004028 ORTHO05D004844 1.6e-69 267.3 521 34.4
Gorai.011G079300 Gossypium raimondii HOM05D004028 ORTHO05D004844 2.1e-69 266.9 522 36.0
Gohir.D10G073400 Gossypium hirsutum HOM05D004028 ORTHO05D004844 1.4e-68 264.2 522 35.8
Atru.chr1.3171 Acer truncatum HOM05D004028 ORTHO05D004844 6.9e-68 261.9 546 34.2
Gohir.A10G078100 Gossypium hirsutum HOM05D004028 ORTHO05D004844 3.4e-67 259.6 521 35.5
MD17G1201100 Malus domestica HOM05D004028 ORTHO05D004844 3.4e-67 259.6 523 34.4
Ciclev10024778m.g Citrus clementina HOM05D004028 ORTHO05D004844 4.5e-67 259.2 522 33.3
Psat4g172640 Pisum sativum HOM05D004028 ORTHO05D004844 1.4e-65 254.2 528 32.8
VMungo0331G0808 Vigna mungo HOM05D004028 ORTHO05D004844 3.2e-65 253.1 543 33.1
Rhsim08G0217900 Rhododendron simsii HOM05D000103 ORTHO05D000049 9.3e-65 251.5 535 32.7
vmacro18947 Vaccinium macrocarpon HOM05D004028 ORTHO05D004844 9.3e-65 251.5 521 32.6
Lj5C65T7 Lonicera japonica HOM05D004028 ORTHO05D004844 1.2e-64 251.1 522 34.7
Eucgr.J03026 Eucalyptus grandis HOM05D004028 ORTHO05D004844 1.6e-64 250.8 522 34.7
TPR.G38588 Trifolium pratense HOM05D004028 ORTHO05D004844 7.9e-64 248.4 528 32.2
Medtr4g011610 Medicago truncatula HOM05D004028 ORTHO05D004844 1.3e-63 247.7 528 31.8
Phvul.010G152600 Phaseolus vulgaris HOM05D004028 ORTHO05D004844 8.7e-63 245.0 542 32.5
TAR636G0621 Trochodendron aralioides HOM05D004028 ORTHO05D004844 1.5e-62 244.2 544 32.7
Nitab4.5_0003751g0020 Nicotiana tabacum HOM05D004028 ORTHO05D004844 3.3e-62 243.0 517 33.5
Glyma.08G208600 Glycine max HOM05D004028 ORTHO05D004844 5.7e-62 242.3 543 32.6
CSS0044472 Camellia sinensis var. sinensis HOM05D004028 ORTHO05D004844 1.3e-61 241.1 522 33.0
Ca_07170_v3 Cicer arietinum L. HOM05D004028 ORTHO05D004844 1.6e-61 240.7 526 31.9
Lalb_Chr04g0262561 Lupinus albus HOM05D004028 ORTHO05D004844 6.3e-61 238.8 520 31.5
Solyc03g119920.1 Solanum lycopersicum HOM05D004028 ORTHO05D004844 6.3e-61 238.8 518 32.8
MSTRG.11103 Avicennia marina HOM05D004028 ORTHO05D004844 8.2e-61 238.4 518 33.2
Lj3g0027440 Lotus japonicus HOM05D004028 ORTHO05D004844 1.1e-60 238.0 544 30.9
Peaxi162Scf00015g00059 Petunia axillaris HOM05D004028 ORTHO05D004844 1.8e-60 237.3 517 33.1
Nn8g39324 Nelumbo nucifera HOM05D004028 ORTHO05D004844 2.4e-60 236.9 540 31.5
Glyma.07G033400 Glycine max HOM05D004028 ORTHO05D004844 5.3e-60 235.7 543 32.0
PGSC0003DMG400005615 Solanum tuberosum HOM05D004028 ORTHO05D004844 5.3e-60 235.7 517 32.5
Nitab4.5_0000410g0330 Nicotiana tabacum HOM05D004028 ORTHO05D004844 6.9e-60 235.3 540 32.0
Sopen03g038800 Solanum pennellii HOM05D004028 ORTHO05D004844 9.0e-60 235.0 517 31.9
arahy.Tifrunner.gnm1.ann1.09PUMV Arachis hypogaea HOM05D004028 ORTHO05D004844 1.5e-59 234.2 520 32.3
CAN.G438.98 Capsicum annuum HOM05D004028 ORTHO05D004844 1.5e-59 234.2 517 32.9
Aqoxy7G01945 Aquilegia oxysepala HOM05D004028 ORTHO05D004844 1.0e-58 231.5 519 33.3
Thhalv10011203m.g Eutrema salsugineum HOM05D004028 ORTHO05D004844 8.5e-58 228.4 527 32.3
Sc12g0009060 Simmondsia chinensis HOM05D004028 ORTHO05D004844 1.4e-57 227.6 522 31.2
Sed0005418 Sechium edule HOM05D004028 ORTHO05D004844 2.5e-57 226.9 521 32.6
AL1G61100 Arabidopsis lyrata HOM05D004028 ORTHO05D004844 4.2e-57 226.1 527 32.4
Carub.0001s4187 Capsella rubella HOM05D004028 ORTHO05D004844 1.6e-56 224.2 527 31.9
ClCG09G002500 Citrullus lanatus HOM05D004028 ORTHO05D004844 2.1e-56 223.8 519 32.6
AT1G52780 Arabidopsis thaliana HOM05D004028 ORTHO05D004844 2.7e-56 223.4 521 33.0
Oeu001149.3 Olea europaea HOM05D004028 ORTHO05D004844 6.1e-56 222.2 522 30.8
CANSAT56G0144 Cannabis sativa HOM05D004028 ORTHO05D004844 1.0e-55 221.5 526 31.2
DCAR_016247 Daucus carota HOM05D004028 ORTHO05D004844 1.8e-55 220.7 418 35.9
PSO170G5200 Papaver somniferum HOM05D004028 ORTHO05D004844 1.8e-55 220.7 521 30.7
ECA247G3140 Erigeron canadensis HOM05D004028 ORTHO05D004844 2.3e-55 220.3 526 32.1
PSO017G1888 Papaver somniferum HOM05D004028 ORTHO05D004844 5.1e-55 219.2 520 31.0
CARHR042960 Cardamine hirsuta HOM05D004028 ORTHO05D004844 1.1e-54 218.0 525 32.0
AUR62011595 Chenopodium quinoa HOM05D004028 ORTHO05D004844 1.1e-54 218.0 520 30.4
MELO3C023384.2 Cucumis melo HOM05D004028 ORTHO05D004844 2.5e-54 216.9 519 31.2
ATR0083G044 Amborella trichopoda HOM05D004028 ORTHO05D004844 3.3e-54 216.5 526 31.7
Cpa.g.sc10.197 Carica papaya HOM05D004028 ORTHO05D004844 5.7e-54 215.7 222 52.7
CsaV3_7G032830 Cucumis sativus L. HOM05D004028 ORTHO05D004844 9.7e-54 214.9 519 30.3
HanXRQChr04g0096371 Helianthus annuus HOM05D004028 ORTHO05D004844 2.8e-53 213.4 545 30.5
MBI04_g43145_MAGBIO Magnolia biondii HOM05D004028 ORTHO05D004844 2.8e-53 213.4 548 31.9
EL10Ac9g21967 Beta vulgaris HOM05D004028 ORTHO05D004844 1.1e-52 211.5 520 29.4
Dinv38073 Davidia involucrata HOM05D004028 ORTHO05D004844 6.9e-52 208.8 222 52.3
Sed0020445 Sechium edule HOM05D004028 ORTHO05D004844 1.2e-51 208.0 519 30.1
Ah.01g021130 Amaranthus hybridus HOM05D004028 ORTHO05D004844 1.5e-51 207.6 524 30.0
A06p01590 Brassica napus HOM05D004028 ORTHO05D004844 1.5e-51 207.6 526 30.6
AUR62016410 Chenopodium quinoa HOM05D004028 ORTHO05D004844 1.5e-51 207.6 520 30.0
BraA06t23378Z Brassica rapa HOM05D004028 ORTHO05D004844 2.6e-51 206.8 528 30.3
BcaC08g43459 Brassica carinata HOM05D004028 ORTHO05D004844 1.7e-50 204.1 526 31.0
C06p08330 Brassica napus HOM05D004028 ORTHO05D004844 1.7e-50 204.1 526 31.0
Sp1g39350 Schrenkiella parvula HOM05D004028 ORTHO05D004844 5.0e-50 202.6 224 49.1
Aa31LG10G2260 Aethionema arabicum HOM05D004028 ORTHO05D004844 7.2e-49 198.7 521 28.4
Oeu001148.1 Olea europaea HOM05D004028 ORTHO05D004844 1.5e-46 191.0 522 28.7
BcaB07g33394 Brassica carinata HOM05D004028 ORTHO05D004844 2.0e-46 190.7 223 47.5
Duzib008G0003 Durio zibethinus HOM05D004028 ORTHO05D004844 2.8e-45 186.8 217 49.8
Duzib016G0002 Durio zibethinus HOM05D004028 ORTHO05D004844 2.8e-45 186.8 217 49.8
PGR004G0126 Punica granatum HOM05D004028 ORTHO05D004844 2.8e-45 186.8 234 45.3
HPP92_021805 Vanilla planifolia HOM05D004028 ORTHO05D004844 4.1e-44 183.0 522 28.4
SEGI_27452 Sequoiadendron giganteum HOM05D004028 ORTHO05D004844 1.5e-43 181.0 498 28.3
Lsat_1_v5_gn_1_33920 Lactuca sativa HOM05D004028 ORTHO05D004844 3.5e-43 179.9 220 47.3
SEGI_28548 Sequoiadendron giganteum HOM05D004028 ORTHO05D004844 5.5e-41 172.6 525 27.0
TAR636G1811 Trochodendron aralioides HOM05D004028 ORTHO05D004844 1.7e-34 151.0 180 48.3
CDE01G0290 Ceratophyllum demersum HOM05D004028 ORTHO05D004844 1.5e-33 147.9 233 39.9
Lsat_1_v5_gn_1_33841 Lactuca sativa HOM05D004028 ORTHO05D004844 3.7e-29 133.3 458 27.7
GSVIVG01017205001 Vitis vinifera HOM05D004028 ORTHO05D004844 4.5e-27 126.3 359 30.1
Lj5C65T8 Lonicera japonica HOM05D004028 ORTHO05D004844 4.2e-25 119.8 113 46.9
Dinv30550 Davidia involucrata HOM05D002286 ORTHO05D004844 7.2e-25 119.0 218 31.2
Migut.I00822 Erythranthe guttata HOM05D004028 ORTHO05D004844 1.6e-24 117.9 507 23.9
SalBow2G1894 Salvia bowleyana HOM05D004028 ORTHO05D004844 2.7e-24 117.1 161 44.7
Sc12g0009050 Simmondsia chinensis HOM05D004028 ORTHO05D004844 4.7e-24 116.3 104 50.0
Zm00001eb122530 Zea mays HOM05D004028 ORTHO05D004844 4.7e-24 116.3 218 32.6
MD09G1217100 Malus domestica HOM05D004028 ORTHO05D004844 6.1e-24 115.9 138 45.7
Migut.I00821 Erythranthe guttata HOM05D004028 ORTHO05D004844 1.4e-23 114.8 502 23.7
Os01g0176800 Oryza sativa ssp. japonica HOM05D004028 ORTHO05D004844 1.4e-23 114.8 221 34.4
Hma1.2p1_0018F.1_g013000 Hydrangea macrophylla HOM05D004028 ORTHO05D004844 8.3e-21 105.5 218 31.7
DCAR_021324 Daucus carota HOM05D004028 ORTHO05D004844 9.1e-20 102.1 124 38.7
CSS0013629 Camellia sinensis var. sinensis HOM05D004028 ORTHO05D004844 3.8e-18 96.7 124 36.3
Cc09_g08350 Coffea canephora HOM05D004028 ORTHO05D004844 1.5e-17 94.7 123 39.0
Lsat_1_v5_gn_8_94080 Lactuca sativa HOM05D004028 ORTHO05D004844 2.5e-17 94.0 97 43.3
Os07g0580700 Oryza sativa ssp. japonica HOM05D004028 ORTHO05D004844 1.6e-16 91.3 123 38.2
Phvul.009G199800 Phaseolus vulgaris HOM05D004028 ORTHO05D004844 1.6e-16 91.3 91 45.1
ECA236G0421 Erigeron canadensis HOM05D004028 ORTHO05D004844 2.1e-16 90.9 96 43.8
HanXRQChr14g0455571 Helianthus annuus HOM05D004028 ORTHO05D004844 2.1e-16 90.9 97 43.3
COL.COLO4_34965 Corchorus olitorius HOM05D004028 ORTHO05D004844 2.8e-16 90.5 248 29.4
Mapoly0121s0043 Marchantia polymorpha HOM05D004028 ORTHO05D004844 4.7e-16 89.7 191 30.9
COL.COLO4_34971 Corchorus olitorius HOM05D004028 ORTHO05D004844 1.4e-15 88.2 139 36.7
Glyma.06G212100 Glycine max HOM05D004028 ORTHO05D004844 1.8e-15 87.8 125 37.6
PGSC0003DMG400028640 Solanum tuberosum HOM05D004028 ORTHO05D004844 1.8e-15 87.8 192 30.7
Actinidia01778 Actinidia chinensis HOM05D000001 ORTHO05D009667 2.3e-15 87.4 146 35.6
COL.COLO4_34968 Corchorus olitorius HOM05D004028 ORTHO05D004844 4.0e-15 86.7 89 44.9
ECA236G2741 Erigeron canadensis HOM05D004028 ORTHO05D004844 4.0e-15 86.7 96 40.6
Gorai.001G003000 Gossypium raimondii HOM05D004028 ORTHO05D004844 1.2e-14 85.1 90 42.2
Gohir.D07G003000 Gossypium hirsutum HOM05D004028 ORTHO05D004844 4.4e-14 83.2 89 41.6
SalBow2G1023 Salvia bowleyana HOM05D004028 ORTHO05D004844 4.4e-14 83.2 140 36.4
EL10As5g23553 Beta vulgaris HOM05D004028 ORTHO05D004844 5.7e-14 82.8 119 38.7
COL.COLO4_34970 Corchorus olitorius HOM05D004028 ORTHO05D004844 9.8e-14 82.0 101 38.6
Sopen12g022140 Solanum pennellii HOM05D004028 ORTHO05D004844 1.3e-13 81.6 112 36.6
TAR636G0233 Trochodendron aralioides HOM05D004028 ORTHO05D004844 1.3e-13 81.6 174 30.5
arahy.Tifrunner.gnm1.ann1.65GG0R Arachis hypogaea HOM05D004028 ORTHO05D004844 2.8e-13 80.5 121 37.2
Ciclev10010305m.g Citrus clementina HOM05D004028 ORTHO05D004844 2.8e-13 80.5 126 36.5
Gorai.001G002900 Gossypium raimondii HOM05D004028 ORTHO05D004844 2.8e-13 80.5 102 39.2
arahy.Tifrunner.gnm1.ann1.B5Y4IK Arachis hypogaea HOM05D004028 ORTHO05D004844 4.9e-13 79.7 121 35.5
COL.COLO4_35012 Corchorus olitorius HOM05D004028 ORTHO05D004844 4.9e-13 79.7 93 41.9
Mapoly0017s0023 Marchantia polymorpha HOM05D004028 ORTHO05D004844 6.3e-13 79.3 90 37.8
AUR62022234 Chenopodium quinoa HOM05D004028 ORTHO05D004844 3.2e-12 77.0 91 40.7
AUR62031946 Chenopodium quinoa HOM05D004028 ORTHO05D004844 3.2e-12 77.0 115 34.8
Migut.I00818 Erythranthe guttata HOM05D004028 ORTHO05D004844 3.2e-12 77.0 345 25.2
Sc05g0000340 Simmondsia chinensis HOM05D004028 ORTHO05D004844 7.0e-12 75.9 112 35.7
Gohir.A07G002700 Gossypium hirsutum HOM05D004028 ORTHO05D004844 9.2e-12 75.5 102 38.2
Cc09_g08320 Coffea canephora HOM05D004028 ORTHO05D004844 1.0e-10 72.0 154 30.5
SMO180G0024 Selaginella moellendorffii HOM05D004028 ORTHO05D004844 1.3e-10 71.6 93 34.4
Dinv38074 Davidia involucrata HOM05D004028 ORTHO05D004844 2.9e-10 70.5 59 54.2
SMO340G0015 Selaginella moellendorffii HOM05D004028 ORTHO05D004844 2.9e-10 70.5 93 33.3
Sabra06G0142000 Salix brachista HOM05D004028 ORTHO05D004844 3.9e-10 70.1 90 38.9
AUR62016304 Chenopodium quinoa HOM05D004028 ORTHO05D004844 1.9e-09 67.8 82 37.8
Sc12g0009040 Simmondsia chinensis HOM05D004028 ORTHO05D004844 7.3e-09 65.9 146 30.8
Gohir.D07G002950 Gossypium hirsutum HOM05D004028 ORTHO05D004844 9.5e-09 65.5 102 35.3
Potri.006G187000 Populus trichocarpa HOM05D004028 ORTHO05D004844 1.2e-08 65.1 92 37.0
Os07g0580766 Oryza sativa ssp. japonica HOM05D004028 ORTHO05D004844 3.6e-08 63.5 106 32.1
Ciclev10010489m.g Citrus clementina HOM05D004028 ORTHO05D004844 1.8e-07 61.2 163 26.4
COL.COLO4_34966 Corchorus olitorius HOM05D004028 ORTHO05D004844 6.8e-07 59.3 72 38.9
Medtr2g013640 Medicago truncatula HOM05D000397 ORTHO05D002023 9.8e-06 55.5 99 30.3


User provided reference genes

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