Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0166300 Salix brachista HOM05D012547 ORTHO05D013361 1.9e-152 542.3 253 100.0
Potri.006G215400 Populus trichocarpa HOM05D012547 ORTHO05D013361 1.2e-85 320.5 186 81.7
Manes.08G000400 Manihot esculenta HOM05D012547 ORTHO05D013361 6.8e-25 118.6 190 36.8
Potri.016G081801 Populus trichocarpa HOM05D012547 ORTHO05D013361 2.4e-17 93.6 94 56.4
QL05p081296 Quercus lobata HOM05D012547 ORTHO05D013361 4.4e-16 89.4 179 36.3
Dinv37230 Davidia involucrata HOM05D033893 ORTHO05D013361 3.2e-14 83.2 185 36.8
FAN09G2318 Fragaria x ananassa HOM05D012547 ORTHO05D013361 7.1e-14 82.0 205 34.1
FAN02G3676 Fragaria x ananassa HOM05D012547 ORTHO05D013361 2.7e-13 80.1 205 35.6
FAN05G3505 Fragaria x ananassa HOM05D012547 ORTHO05D013361 3.5e-13 79.7 200 33.5
Ah.07g203910 Amaranthus hybridus HOM05D004458 ORTHO05D005455 3.0e-12 76.6 44 79.5
MSTRG.10175 Avicennia marina HOM05D004458 ORTHO05D005455 3.0e-12 76.6 44 79.5
AUR62002594 Chenopodium quinoa HOM05D004458 ORTHO05D005455 3.0e-12 76.6 44 79.5
AUR62030017 Chenopodium quinoa HOM05D004458 ORTHO05D005455 3.0e-12 76.6 44 79.5
ClCG05G006720 Citrullus lanatus HOM05D004458 ORTHO05D005455 3.0e-12 76.6 44 79.5
MELO3C006733.2 Cucumis melo HOM05D004458 ORTHO05D005455 3.0e-12 76.6 44 79.5
CsaV3_3G015350 Cucumis sativus L. HOM05D004458 ORTHO05D005455 3.0e-12 76.6 44 79.5
Lsat_1_v5_gn_1_40241 Lactuca sativa HOM05D004458 ORTHO05D005455 3.0e-12 76.6 44 79.5
MBI19_g32690_MAGBIO Magnolia biondii HOM05D004458 ORTHO05D005455 3.0e-12 76.6 44 79.5
Manes.15G003100 Manihot esculenta HOM05D004458 ORTHO05D005455 3.0e-12 76.6 44 79.5
PSO210G2951 Papaver somniferum HOM05D004458 ORTHO05D005455 3.0e-12 76.6 44 79.5
PSO761G0404 Papaver somniferum HOM05D004458 ORTHO05D005455 3.0e-12 76.6 44 79.5
Potri.008G101100 Populus trichocarpa HOM05D004458 ORTHO05D005455 3.0e-12 76.6 44 79.5
Potri.010G150300 Populus trichocarpa HOM05D004458 ORTHO05D005455 3.0e-12 76.6 44 79.5
Sabra08G0076400 Salix brachista HOM05D004458 ORTHO05D005455 3.0e-12 76.6 44 79.5
Sed0009218 Sechium edule HOM05D004458 ORTHO05D005455 3.0e-12 76.6 44 79.5
Sc25g0001600 Simmondsia chinensis HOM05D004458 ORTHO05D005455 3.0e-12 76.6 44 79.5
GSVIVG01034940001 Vitis vinifera HOM05D004458 ORTHO05D005455 3.0e-12 76.6 44 79.5
ATR0693G312 Amborella trichopoda HOM05D004458 ORTHO05D005455 3.9e-12 76.3 44 79.5
EL10Ac3g06292 Beta vulgaris HOM05D004458 ORTHO05D005455 3.9e-12 76.3 44 79.5
ECA233G6062 Erigeron canadensis HOM05D004458 ORTHO05D005455 3.9e-12 76.3 43 76.7
HanXRQChr11g0353951 Helianthus annuus HOM05D004458 ORTHO05D005455 3.9e-12 76.3 44 79.5
Lj3A836T25 Lonicera japonica HOM05D004458 ORTHO05D005455 3.9e-12 76.3 44 77.3
Nn3g21829 Nelumbo nucifera HOM05D004458 ORTHO05D005455 3.9e-12 76.3 44 77.3
TAR362G1183 Trochodendron aralioides HOM05D004458 ORTHO05D005455 3.9e-12 76.3 44 79.5
Dinv44245 Davidia involucrata HOM05D004458 ORTHO05D005455 5.1e-12 75.9 44 77.3
Aqoxy2G02626 Aquilegia oxysepala HOM05D004458 ORTHO05D005455 6.6e-12 75.5 44 77.3
Cfa017464 Carpinus fangiana HOM05D007555 ORTHO05D009521 6.6e-12 75.5 159 34.6
CSS0034217 Camellia sinensis var. sinensis HOM05D004458 ORTHO05D005455 1.1e-11 74.7 44 77.3
Lsat_1_v5_gn_6_69461 Lactuca sativa HOM05D004458 ORTHO05D005455 1.1e-11 74.7 43 76.7
Oeu052155.2 Olea europaea HOM05D004458 ORTHO05D005455 1.1e-11 74.7 44 77.3
PGR004G0801 Punica granatum HOM05D004458 ORTHO05D005455 1.1e-11 74.7 44 77.3
Sabra10G0115700 Salix brachista HOM05D004458 ORTHO05D005455 1.1e-11 74.7 44 77.3
SalBow8G3582 Salvia bowleyana HOM05D004458 ORTHO05D005455 1.1e-11 74.7 44 77.3
unitig_8.g3100 Utricularia gibba HOM05D004458 ORTHO05D005455 1.1e-11 74.7 44 77.3
Atru.chr4.3103 Acer truncatum HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
Aa31LG11G8410 Aethionema arabicum HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 75.0
AL6G41130 Arabidopsis lyrata HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 75.0
AT5G30510 Arabidopsis thaliana HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 75.0
MSTRG.24833 Avicennia marina HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
BcaB04g19641 Brassica carinata HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 75.0
BcaC04g23713 Brassica carinata HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 75.0
BcaC06g30694 Brassica carinata HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 75.0
BcaNung02119 Brassica carinata HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 75.0
A06p38180 Brassica napus HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 75.0
A09p05060 Brassica napus HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 75.0
C07p40030 Brassica napus HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 75.0
C09p05470 Brassica napus HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 75.0
BolC7t44537H Brassica oleracea HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 75.0
BolC9t53476H Brassica oleracea HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 75.0
BraA06t26733Z Brassica rapa HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 75.0
BraA09t36145Z Brassica rapa HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 75.0
Carub.0020s0005 Capsella rubella HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 75.0
CAN.G14.37 Capsicum annuum HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
CARHR185550 Cardamine hirsuta HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 75.0
Cfa015690 Carpinus fangiana HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
CiPaw.01G133400 Carya illinoinensis HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
CiPaw.02G072000 Carya illinoinensis HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
CDE05G1409 Ceratophyllum demersum HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
CDE11G1204 Ceratophyllum demersum HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
Ciclev10005364m.g Citrus clementina HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
Cc03_g00460 Coffea canephora HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
COL.COLO4_34557 Corchorus olitorius HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
Haze_00830 Corylus avellana HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
DCAR_026969 Daucus carota HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
Migut.G00023 Erythranthe guttata HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
Eucgr.H04084 Eucalyptus grandis HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
Thhalv10004302m.g Eutrema salsugineum HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 75.0
Gohir.A02G056300 Gossypium hirsutum HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
Gohir.D02G061500 Gossypium hirsutum HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
Gorai.005G069200 Gossypium raimondii HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
Nitab4.5_0000186g0060 Nicotiana tabacum HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
Nitab4.5_0004298g0040 Nicotiana tabacum HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
Peaxi162Scf00126g01416 Petunia axillaris HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
QL06p013334 Quercus lobata HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
Sp2g19940 Schrenkiella parvula HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 75.0
Solyc12g099110.2 Solanum lycopersicum HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 75.0
PGSC0003DMG400001233 Solanum tuberosum HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
unitig_22.g6348 Utricularia gibba HOM05D004458 ORTHO05D005455 1.5e-11 74.3 44 77.3
DCAR_023377 Daucus carota HOM05D004458 ORTHO05D005455 1.9e-11 73.9 44 77.3
Solyc01g057830.3 Solanum lycopersicum HOM05D004458 ORTHO05D005455 1.9e-11 73.9 44 77.3
Sopen01g023160 Solanum pennellii HOM05D004458 ORTHO05D005455 1.9e-11 73.9 44 77.3
Actinidia18482 Actinidia chinensis HOM05D004458 ORTHO05D005455 2.5e-11 73.6 44 75.0
arahy.Tifrunner.gnm1.ann1.2F4DQW Arachis hypogaea HOM05D004458 ORTHO05D005455 2.5e-11 73.6 44 72.7
arahy.Tifrunner.gnm1.ann1.NS41IF Arachis hypogaea HOM05D004458 ORTHO05D005455 2.5e-11 73.6 44 72.7
Hma1.2p1_1096F.1_g256640 Hydrangea macrophylla HOM05D004458 ORTHO05D005455 2.5e-11 73.6 44 75.0
Rhsim04G0243100 Rhododendron simsii HOM05D004458 ORTHO05D005455 2.5e-11 73.6 44 75.0
Thecc.04G307500 Theobroma cacao HOM05D004458 ORTHO05D005455 2.5e-11 73.6 44 77.3
vmacro07975 Vaccinium macrocarpon HOM05D004458 ORTHO05D005455 2.5e-11 73.6 44 75.0
Actinidia31582 Actinidia chinensis HOM05D004458 ORTHO05D005455 3.3e-11 73.2 44 75.0
FvH4_4g20780 Fragaria vesca HOM05D004458 ORTHO05D005455 3.3e-11 73.2 44 75.0
FAN07G1987 Fragaria x ananassa HOM05D004458 ORTHO05D005455 3.3e-11 73.2 44 75.0
FAN12G4036 Fragaria x ananassa HOM05D004458 ORTHO05D005455 3.3e-11 73.2 44 75.0
FAN17G0333 Fragaria x ananassa HOM05D004458 ORTHO05D005455 3.3e-11 73.2 44 75.0
MD16G1147700 Malus domestica HOM05D004458 ORTHO05D005455 3.3e-11 73.2 44 75.0
Os03g0315800 Oryza sativa ssp. japonica HOM05D004458 ORTHO05D005455 3.3e-11 73.2 44 75.0
Prupe.1G111400 Prunus persica HOM05D004458 ORTHO05D005455 3.3e-11 73.2 44 75.0
RcHm_v2.0_Chr4g0426221 Rosa chinensis HOM05D004458 ORTHO05D005455 3.3e-11 73.2 44 75.0
Zm00001eb395590 Zea mays HOM05D004458 ORTHO05D005455 3.3e-11 73.2 44 75.0
CAN.G484.78 Capsicum annuum HOM05D004458 ORTHO05D005455 4.3e-11 72.8 44 75.0
Cpa.g.sc146.69 Carica papaya HOM05D004458 ORTHO05D005455 4.3e-11 72.8 44 75.0
Dinv15126 Davidia involucrata HOM05D004458 ORTHO05D005455 4.3e-11 72.8 44 75.0
Duzib052G0436 Durio zibethinus HOM05D004458 ORTHO05D005455 4.3e-11 72.8 44 75.0
THA.LOC104818863 Tarenaya hassleriana HOM05D004458 ORTHO05D005455 4.3e-11 72.8 44 75.0
Hund12232 Selenicereus undatus HOM05D004458 ORTHO05D005455 5.6e-11 72.4 44 72.7
Sopen12g033820 Solanum pennellii HOM05D004458 ORTHO05D005455 5.6e-11 72.4 44 72.7
PGSC0003DMG400004609 Solanum tuberosum HOM05D004458 ORTHO05D005455 5.6e-11 72.4 44 72.7
CANSAT78G1602 Cannabis sativa HOM05D004458 ORTHO05D005455 7.3e-11 72.0 44 72.7
MD13G1147900 Malus domestica HOM05D004458 ORTHO05D005455 9.6e-11 71.6 44 72.7
arahy.Tifrunner.gnm1.ann1.C83F23 Arachis hypogaea HOM05D004458 ORTHO05D005455 1.2e-10 71.2 43 72.1
arahy.Tifrunner.gnm1.ann1.G3761Q Arachis hypogaea HOM05D004458 ORTHO05D005455 1.2e-10 71.2 43 72.1
arahy.Tifrunner.gnm1.ann1.PZ9WPP Arachis hypogaea HOM05D004458 ORTHO05D005455 1.2e-10 71.2 43 72.1
arahy.Tifrunner.gnm1.ann1.QN1HMQ Arachis hypogaea HOM05D004458 ORTHO05D005455 1.2e-10 71.2 43 72.1
Duzib212G0400 Durio zibethinus HOM05D004458 ORTHO05D005455 1.2e-10 71.2 44 72.7
FvH4_6g14810 Fragaria vesca HOM05D012547 ORTHO05D013361 1.2e-10 71.2 202 31.7
Lj6g0001722 Lotus japonicus HOM05D004458 ORTHO05D005455 1.2e-10 71.2 44 72.7
TWI53G1192 Tripterygium wilfordii HOM05D004458 ORTHO05D005455 1.2e-10 71.2 44 75.0
Glyma.17G037700 Glycine max HOM05D004458 ORTHO05D005455 1.6e-10 70.9 44 72.7
Phvul.003G118600 Phaseolus vulgaris HOM05D004458 ORTHO05D005455 1.6e-10 70.9 44 72.7
VMungo1215G3325 Vigna mungo HOM05D004458 ORTHO05D005455 1.6e-10 70.9 44 72.7
Lalb_Chr07g0181881 Lupinus albus HOM05D004458 ORTHO05D005455 2.1e-10 70.5 44 72.7
Lalb_Chr15g0089031 Lupinus albus HOM05D004458 ORTHO05D005455 2.1e-10 70.5 43 72.1
FAN14G3580 Fragaria x ananassa HOM05D012547 ORTHO05D013361 2.8e-10 70.1 205 32.2
Lalb_Chr20g0120631 Lupinus albus HOM05D004458 ORTHO05D005455 2.8e-10 70.1 43 72.1
TWI09G1490 Tripterygium wilfordii HOM05D004458 ORTHO05D005455 2.8e-10 70.1 44 72.7
Glyma.09G031800 Glycine max HOM05D004458 ORTHO05D005455 6.2e-10 68.9 44 68.2
Glyma.15G136800 Glycine max HOM05D004458 ORTHO05D005455 6.2e-10 68.9 44 68.2
Gohir.A13G095480 Gossypium hirsutum HOM05D019174 ORTHO05D025692 6.2e-10 68.9 142 37.3
SGA_v2.0_scaffold157G37359 Striga asiatica HOM05D004458 ORTHO05D005455 6.2e-10 68.9 44 70.5
TPR.G10105 Trifolium pratense HOM05D004458 ORTHO05D005455 1.1e-09 68.2 44 70.5
QL07p045970 Quercus lobata HOM05D012547 ORTHO05D013361 1.4e-09 67.8 176 32.4
Sed0001457 Sechium edule HOM05D004458 ORTHO05D005455 2.4e-09 67.0 39 76.9
Phvul.006G121100 Phaseolus vulgaris HOM05D004458 ORTHO05D005455 3.1e-09 66.6 44 63.6
VMungo0540G1791 Vigna mungo HOM05D004458 ORTHO05D005455 4.0e-09 66.2 44 63.6
COL.COLO4_10314 Corchorus olitorius HOM05D019174 ORTHO05D013361 1.2e-08 64.7 172 31.4
Glyma.07G235700 Glycine max HOM05D004458 ORTHO05D005455 1.2e-08 64.7 38 78.9
TAR636G0490 Trochodendron aralioides HOM05D004458 ORTHO05D005455 1.2e-08 64.7 44 65.9
Ca_00945_v3 Cicer arietinum L. HOM05D004458 ORTHO05D005455 1.5e-08 64.3 44 63.6
Ca_00951_v3 Cicer arietinum L. HOM05D004458 ORTHO05D005455 1.5e-08 64.3 44 63.6
Psat1g162760 Pisum sativum HOM05D004458 ORTHO05D005455 1.5e-08 64.3 44 63.6
unitig_8.g3098 Utricularia gibba HOM05D004458 ORTHO05D005455 2.0e-08 63.9 44 61.4
ClCG08G002550 Citrullus lanatus HOM05D004458 ORTHO05D005455 2.6e-08 63.5 44 61.4
Nn2g15924 Nelumbo nucifera HOM05D007301 ORTHO05D002389 2.6e-08 63.5 177 31.1
DCAR_002527 Daucus carota HOM05D004458 ORTHO05D005455 3.4e-08 63.2 51 56.9
Sed0002093 Sechium edule HOM05D004458 ORTHO05D005455 3.4e-08 63.2 43 65.1
Cpa.g.sc114.22 Carica papaya HOM05D012547 ORTHO05D013361 4.4e-08 62.8 132 32.6
ClCG06G004350 Citrullus lanatus HOM05D004458 ORTHO05D005455 4.4e-08 62.8 51 58.8
SMO146G0227 Selaginella moellendorffii HOM05D004458 ORTHO05D005455 4.4e-08 62.8 44 56.8
Medtr2g033020 Medicago truncatula HOM05D004458 ORTHO05D005455 7.6e-08 62.0 45 66.7
Thecc.05G049200 Theobroma cacao HOM05D019174 ORTHO05D025692 7.6e-08 62.0 188 31.4
Pp3c20_22450 Physcomitrium patens HOM05D004458 ORTHO05D005455 9.9e-08 61.6 43 55.8
AagrBONN_evm.TU.Sc2ySwM_368.2766 Anthoceros agrestis HOM05D004458 ORTHO05D005455 2.2e-07 60.5 43 53.5
Pp3c10_21790 Physcomitrium patens HOM05D004458 ORTHO05D005455 2.2e-07 60.5 43 53.5
MELO3C025002.2 Cucumis melo HOM05D004458 ORTHO05D005455 6.4e-07 58.9 44 56.8
Sed0000500 Sechium edule HOM05D004458 ORTHO05D005455 8.4e-07 58.5 44 54.5
Atru.chr8.2504 Acer truncatum HOM05D012547 ORTHO05D013361 1.4e-06 57.8 170 27.6
Mapoly0018s0004 Marchantia polymorpha HOM05D004458 ORTHO05D005455 1.4e-06 57.8 44 52.3
Ciclev10012836m.g Citrus clementina HOM05D019174 ORTHO05D013361 1.9e-06 57.4 191 29.8
MCO03G484 Micromonas commoda HOM05D004458 ORTHO05D005455 3.2e-06 56.6 37 54.1
Cre09.g394750 Chlamydomonas reinhardtii HOM05D004458 ORTHO05D005455 5.4e-06 55.8 35 60.0
Gorai.009G422100 Gossypium raimondii HOM05D019174 ORTHO05D025692 9.3e-06 55.1 123 32.5


User provided reference genes

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