Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra06G0147100 Salix brachista HOM05D000091 ORTHO05D005533 4.5e-153 544.7 293 100.0
Sabra11G0073700 Salix brachista HOM05D000091 ORTHO05D005533 6.2e-54 215.3 118 94.9
Potri.013G159000 Populus trichocarpa HOM05D000091 ORTHO05D005533 2.4e-50 203.4 119 89.1
Sabra01G0097200 Salix brachista HOM05D000091 ORTHO05D005533 2.7e-49 199.9 116 89.7
Potri.019G131600 Populus trichocarpa HOM05D000091 ORTHO05D005533 1.6e-46 190.7 118 83.1
Sabra13G0127600 Salix brachista HOM05D000091 ORTHO05D005533 2.4e-45 186.8 120 84.2
Sabra19G0128400 Salix brachista HOM05D000091 ORTHO05D005533 1.3e-43 181.0 119 80.7
Sabra06G0128600 Salix brachista HOM05D000091 ORTHO05D005533 2.4e-42 176.8 113 86.7
Sabra14G0044900 Salix brachista HOM05D000091 ORTHO05D005533 9.6e-39 164.9 134 70.9
Gohir.A08G204100 Gossypium hirsutum HOM05D000091 ORTHO05D005533 1.5e-36 157.5 123 70.7
Gohir.D08G221400 Gossypium hirsutum HOM05D000091 ORTHO05D005533 1.5e-36 157.5 121 70.2
Gorai.004G235100 Gossypium raimondii HOM05D000091 ORTHO05D005533 1.5e-36 157.5 121 70.2
Atru.chr10.2349 Acer truncatum HOM05D000091 ORTHO05D005533 1.7e-35 154.1 122 69.7
GSVIVG01024542001 Vitis vinifera HOM05D000091 ORTHO05D005533 8.4e-35 151.8 119 69.7
Dinv12290 Davidia involucrata HOM05D000091 ORTHO05D005533 1.4e-34 151.0 120 72.5
Thecc.09G365300 Theobroma cacao HOM05D000091 ORTHO05D005533 3.2e-34 149.8 124 68.5
Cpa.g.sc2.272 Carica papaya HOM05D000091 ORTHO05D005533 5.5e-34 149.1 121 69.4
Actinidia11633 Actinidia chinensis HOM05D000091 ORTHO05D005533 9.3e-34 148.3 121 68.6
DCAR_018580 Daucus carota HOM05D000091 ORTHO05D005533 9.3e-34 148.3 121 68.6
AUR62020714 Chenopodium quinoa HOM05D000091 ORTHO05D005533 2.7e-33 146.7 120 66.7
COL.COLO4_11224 Corchorus olitorius HOM05D000091 ORTHO05D005533 2.7e-33 146.7 123 65.9
EL10Ac5g11739 Beta vulgaris HOM05D000091 ORTHO05D005533 3.5e-33 146.4 120 66.7
Hund19361 Selenicereus undatus HOM05D000091 ORTHO05D005533 4.6e-33 146.0 120 69.2
Duzib168G0264 Durio zibethinus HOM05D000091 ORTHO05D005533 6.0e-33 145.6 121 65.3
THA.LOC104800795 Tarenaya hassleriana HOM05D000091 ORTHO05D005533 6.0e-33 145.6 119 67.2
Manes.02G218100 Manihot esculenta HOM05D000091 ORTHO05D005533 7.9e-33 145.2 126 68.3
Ciclev10000673m.g Citrus clementina HOM05D000091 ORTHO05D005533 1.8e-32 144.1 122 65.6
Aqoxy4G03299 Aquilegia oxysepala HOM05D000091 ORTHO05D005533 2.3e-32 143.7 120 68.3
AUR62028008 Chenopodium quinoa HOM05D000091 ORTHO05D005533 5.1e-32 142.5 120 65.0
THA.LOC104826263 Tarenaya hassleriana HOM05D000091 ORTHO05D005533 6.7e-32 142.1 120 64.2
Cfa011848 Carpinus fangiana HOM05D000091 ORTHO05D005533 8.7e-32 141.7 122 63.1
TAR636G1853 Trochodendron aralioides HOM05D000091 ORTHO05D005533 1.1e-31 141.4 122 65.6
Sed0000462 Sechium edule HOM05D000091 ORTHO05D005533 1.5e-31 141.0 121 67.8
SGA_v2.0_scaffold120G33001 Striga asiatica HOM05D000091 ORTHO05D005533 1.5e-31 141.0 121 64.5
Oeu022886.1 Olea europaea HOM05D000091 ORTHO05D005533 1.9e-31 140.6 119 65.5
TAR636G2743 Trochodendron aralioides HOM05D000091 ORTHO05D005533 2.5e-31 140.2 122 64.8
Cc01_g15410 Coffea canephora HOM05D000091 ORTHO05D005533 3.3e-31 139.8 120 64.2
MSTRG.17922 Avicennia marina HOM05D000091 ORTHO05D005533 5.7e-31 139.0 120 64.2
Haze_24484 Corylus avellana HOM05D000091 ORTHO05D005533 9.6e-31 138.3 121 62.8
PGR119G0804 Punica granatum HOM05D000091 ORTHO05D005533 9.6e-31 138.3 121 64.5
LjContig00141g0016392 Lotus japonicus HOM05D000091 ORTHO05D005533 1.6e-30 137.5 118 61.0
Dinv28748 Davidia involucrata HOM05D000091 ORTHO05D005533 2.1e-30 137.1 120 66.7
Nitab4.5_0002283g0030 Nicotiana tabacum HOM05D000091 ORTHO05D005533 2.8e-30 136.7 121 66.1
TWI79G1214 Tripterygium wilfordii HOM05D000091 ORTHO05D005533 4.8e-30 136.0 127 64.6
AT2G30520 Arabidopsis thaliana HOM05D000091 ORTHO05D005533 8.2e-30 135.2 128 60.2
Carub.0004s1168 Capsella rubella HOM05D000091 ORTHO05D005533 8.2e-30 135.2 128 60.2
Nitab4.5_0000311g0030 Nicotiana tabacum HOM05D000091 ORTHO05D005533 8.2e-30 135.2 121 65.3
Peaxi162Scf00455g00057 Petunia axillaris HOM05D000091 ORTHO05D005533 8.2e-30 135.2 120 66.7
Sc06g0001460 Simmondsia chinensis HOM05D000091 ORTHO05D005533 8.2e-30 135.2 118 63.6
AL4G25400 Arabidopsis lyrata HOM05D000091 ORTHO05D005533 1.4e-29 134.4 128 59.4
Eucgr.H02604 Eucalyptus grandis HOM05D000091 ORTHO05D005533 1.8e-29 134.0 122 63.9
Aa31LG5G6250 Aethionema arabicum HOM05D000091 ORTHO05D005533 2.4e-29 133.7 128 61.7
Hma1.2p1_0161F.1_g072060 Hydrangea macrophylla HOM05D000091 ORTHO05D005533 2.4e-29 133.7 120 60.8
Sp4g13070 Schrenkiella parvula HOM05D000091 ORTHO05D005533 2.4e-29 133.7 130 60.0
CiPaw.13G062100 Carya illinoinensis HOM05D000091 ORTHO05D005533 4.0e-29 132.9 120 64.2
BcaB01g04097 Brassica carinata HOM05D000091 ORTHO05D005533 5.3e-29 132.5 126 58.7
CANSAT54G2963 Cannabis sativa HOM05D000091 ORTHO05D005533 5.3e-29 132.5 125 64.8
Migut.N00714 Erythranthe guttata HOM05D000091 ORTHO05D005533 5.3e-29 132.5 127 57.5
CAN.G123.1 Capsicum annuum HOM05D000091 ORTHO05D005533 6.9e-29 132.1 123 62.6
Lsat_1_v5_gn_9_13500 Lactuca sativa HOM05D000091 ORTHO05D005533 1.2e-28 131.3 121 61.2
CsaV3_4G007290 Cucumis sativus L. HOM05D000091 ORTHO05D005533 1.5e-28 131.0 125 64.8
PGSC0003DMG400011974 Solanum tuberosum HOM05D000091 ORTHO05D005533 1.5e-28 131.0 123 60.2
MELO3C016232.2 Cucumis melo HOM05D000091 ORTHO05D005533 2.6e-28 130.2 125 64.0
Sopen07g022670 Solanum pennellii HOM05D000091 ORTHO05D005533 3.4e-28 129.8 124 59.7
A05p14950 Brassica napus HOM05D000091 ORTHO05D005533 4.5e-28 129.4 126 57.9
BraA05t20421Z Brassica rapa HOM05D000091 ORTHO05D005533 4.5e-28 129.4 126 57.9
Prupe.6G039200 Prunus persica HOM05D000091 ORTHO05D005533 5.8e-28 129.0 126 60.3
Solyc07g043130.3 Solanum lycopersicum HOM05D000091 ORTHO05D005533 5.8e-28 129.0 124 59.7
Rhsim13G0057700 Rhododendron simsii HOM05D000091 ORTHO05D005533 1.0e-27 128.3 121 60.3
SalBow2G2612 Salvia bowleyana HOM05D000091 ORTHO05D005533 1.7e-27 127.5 121 57.9
BcaC02g11143 Brassica carinata HOM05D000091 ORTHO05D005533 2.2e-27 127.1 126 57.9
C04p20000 Brassica napus HOM05D000091 ORTHO05D005533 2.2e-27 127.1 126 57.9
BolC4t23539H Brassica oleracea HOM05D000091 ORTHO05D005533 2.2e-27 127.1 126 57.9
Phvul.008G245701 Phaseolus vulgaris HOM05D000091 ORTHO05D005533 2.9e-27 126.7 122 61.5
Phvul.009G074666 Phaseolus vulgaris HOM05D000091 ORTHO05D005533 2.9e-27 126.7 122 61.5
Medtr5g075640 Medicago truncatula HOM05D000091 ORTHO05D005533 5.0e-27 125.9 119 61.3
RcHm_v2.0_Chr5g0073591 Rosa chinensis HOM05D000091 ORTHO05D005533 5.0e-27 125.9 122 58.2
ClCG07G010980 Citrullus lanatus HOM05D000091 ORTHO05D005533 8.4e-27 125.2 122 63.9
Glyma.02G237100 Glycine max HOM05D000091 ORTHO05D005533 1.1e-26 124.8 122 63.1
ATR1127G096 Amborella trichopoda HOM05D000091 ORTHO05D005533 1.4e-26 124.4 120 55.8
Lalb_Chr17g0345671 Lupinus albus HOM05D000091 ORTHO05D005533 1.9e-26 124.0 119 61.3
MD11G1051400 Malus domestica HOM05D000091 ORTHO05D005533 1.9e-26 124.0 120 60.8
TPR.G7544 Trifolium pratense HOM05D000091 ORTHO05D005533 1.9e-26 124.0 119 61.3
Glyma.11G200201 Glycine max HOM05D000091 ORTHO05D005533 2.5e-26 123.6 123 55.3
FAN21G3679 Fragaria x ananassa HOM05D000091 ORTHO05D005533 3.2e-26 123.2 123 58.5
Ca_15075_v3 Cicer arietinum L. HOM05D000091 ORTHO05D005533 4.2e-26 122.9 118 58.5
FAN16G0186 Fragaria x ananassa HOM05D000091 ORTHO05D005533 4.2e-26 122.9 123 58.5
BcaB02g10329 Brassica carinata HOM05D000091 ORTHO05D005533 5.5e-26 122.5 127 56.7
PSO384G2033 Papaver somniferum HOM05D000091 ORTHO05D005533 5.5e-26 122.5 122 58.2
CSS0000355 Camellia sinensis var. sinensis HOM05D000091 ORTHO05D005533 9.3e-26 121.7 127 56.7
CSS0019815 Camellia sinensis var. sinensis HOM05D000091 ORTHO05D005533 9.3e-26 121.7 123 57.7
Glyma.18G050800 Glycine max HOM05D000091 ORTHO05D005533 9.3e-26 121.7 119 56.3
QL01p024298 Quercus lobata HOM05D000091 ORTHO05D005533 9.3e-26 121.7 128 57.0
vmacro14651 Vaccinium macrocarpon HOM05D000091 ORTHO05D005533 9.3e-26 121.7 123 59.3
HanXRQChr08g0230191 Helianthus annuus HOM05D000091 ORTHO05D005533 1.2e-25 121.3 123 56.9
CSS0008144 Camellia sinensis var. sinensis HOM05D000091 ORTHO05D005533 1.6e-25 120.9 123 57.7
FAN25G1862 Fragaria x ananassa HOM05D000091 ORTHO05D005533 1.6e-25 120.9 125 57.6
PSO339G4925 Papaver somniferum HOM05D000091 ORTHO05D005533 1.6e-25 120.9 122 58.2
arahy.Tifrunner.gnm1.ann1.MWJV5X Arachis hypogaea HOM05D000091 ORTHO05D005533 2.1e-25 120.6 128 57.8
CARHR123970 Cardamine hirsuta HOM05D000091 ORTHO05D005533 2.7e-25 120.2 130 53.8
Eucgr.B03325 Eucalyptus grandis HOM05D000091 ORTHO05D005533 2.7e-25 120.2 123 61.8
Hma1.2p1_0170F.1_g075320 Hydrangea macrophylla HOM05D000091 ORTHO05D005533 2.7e-25 120.2 118 54.2
C03p20190 Brassica napus HOM05D000091 ORTHO05D005533 4.6e-25 119.4 126 57.1
MSTRG.18534 Avicennia marina HOM05D000091 ORTHO05D005533 6.1e-25 119.0 122 55.7
Lj6g0014801 Lotus japonicus HOM05D000091 ORTHO05D005533 6.1e-25 119.0 118 59.3
VMungo0540G2386 Vigna mungo HOM05D000091 ORTHO05D005533 6.1e-25 119.0 118 52.5
arahy.Tifrunner.gnm1.ann1.2LCT5X Arachis hypogaea HOM05D000091 ORTHO05D005533 7.9e-25 118.6 128 57.0
Phvul.006G080400 Phaseolus vulgaris HOM05D000091 ORTHO05D005533 7.9e-25 118.6 119 53.8
A03p17090 Brassica napus HOM05D000091 ORTHO05D005533 1.3e-24 117.9 126 56.3
BraA03t10985Z Brassica rapa HOM05D000091 ORTHO05D005533 1.3e-24 117.9 126 56.3
VMungo0647G0513 Vigna mungo HOM05D000091 ORTHO05D005533 1.3e-24 117.9 119 60.5
BcaB01g04092 Brassica carinata HOM05D000091 ORTHO05D005533 1.8e-24 117.5 126 56.3
BcaC01g06005 Brassica carinata HOM05D000091 ORTHO05D005533 1.8e-24 117.5 126 56.3
Ca_05726_v3 Cicer arietinum L. HOM05D000091 ORTHO05D005533 1.8e-24 117.5 118 57.6
Glyma.14G206100 Glycine max HOM05D000091 ORTHO05D005533 1.8e-24 117.5 121 61.2
BolC3t14393H Brassica oleracea HOM05D000091 ORTHO05D005533 2.3e-24 117.1 126 56.3
FAN11G2137 Fragaria x ananassa HOM05D000091 ORTHO05D005533 3.9e-24 116.3 123 56.1
Lalb_Chr04g0251661 Lupinus albus HOM05D000091 ORTHO05D005533 5.1e-24 115.9 121 58.7
HPP92_019755 Vanilla planifolia HOM05D000091 ORTHO05D005533 6.7e-24 115.5 119 52.9
Actinidia34503 Actinidia chinensis HOM05D000091 ORTHO05D005533 8.7e-24 115.2 121 56.2
FvH4_3g40860 Fragaria vesca HOM05D000091 ORTHO05D005533 1.1e-23 114.8 123 55.3
ECA247G0676 Erigeron canadensis HOM05D000091 ORTHO05D005533 1.5e-23 114.4 120 54.2
MD03G1048900 Malus domestica HOM05D000091 ORTHO05D005533 1.9e-23 114.0 120 56.7
PGR102G0890 Punica granatum HOM05D000091 ORTHO05D005533 2.5e-23 113.6 121 57.0
BcaB01g04088 Brassica carinata HOM05D000091 ORTHO05D005533 7.4e-23 112.1 119 57.1
Medtr3g062540 Medicago truncatula HOM05D000091 ORTHO05D005533 7.4e-23 112.1 120 57.5
Lsat_1_v5_gn_8_99841 Lactuca sativa HOM05D000091 ORTHO05D005533 6.3e-22 109.0 120 51.7
ECA236G3414 Erigeron canadensis HOM05D000091 ORTHO05D005533 8.2e-22 108.6 118 53.4
Ca_29651_v3 Cicer arietinum L. HOM05D000091 ORTHO05D005533 1.8e-21 107.5 112 55.4
Rhsim01G0244300 Rhododendron simsii HOM05D000091 ORTHO05D005533 4.1e-21 106.3 121 48.8
Lsat_1_v5_gn_8_99781 Lactuca sativa HOM05D000091 ORTHO05D005533 9.0e-21 105.1 118 53.4
MBI15_g32281_MAGBIO Magnolia biondii HOM05D000091 ORTHO05D005533 9.0e-21 105.1 96 59.4
CDE07G1112 Ceratophyllum demersum HOM05D000091 ORTHO05D005533 1.2e-20 104.8 118 53.4
TPR.G40592 Trifolium pratense HOM05D000091 ORTHO05D005533 3.4e-20 103.2 112 50.0
HanXRQChr10g0292941 Helianthus annuus HOM05D000091 ORTHO05D005533 4.5e-20 102.8 118 51.7
CDE06G1119 Ceratophyllum demersum HOM05D000091 ORTHO05D005533 7.7e-20 102.1 118 52.5
arahy.Tifrunner.gnm1.ann1.RJMS64 Arachis hypogaea HOM05D000091 ORTHO05D005533 9.4e-18 95.1 96 52.1
arahy.Tifrunner.gnm1.ann1.LVE7NM Arachis hypogaea HOM05D000091 ORTHO05D005533 7.9e-17 92.0 95 51.6
Nn2g10242 Nelumbo nucifera HOM05D000091 ORTHO05D005533 8.8e-16 88.6 86 60.5
Zm00001eb093890 Zea mays HOM05D000091 ORTHO05D005533 6.3e-14 82.4 136 44.1
Actinidia23831 Actinidia chinensis HOM05D000091 ORTHO05D005533 1.4e-08 64.7 69 56.5
SEGI_28784 Sequoiadendron giganteum HOM05D000091 ORTHO05D005533 2.3e-08 63.9 134 39.6
Os11g0118300 Oryza sativa ssp. japonica HOM05D000091 ORTHO05D005533 2.0e-07 60.8 135 37.8
Os12g0117400 Oryza sativa ssp. japonica HOM05D000091 ORTHO05D005533 2.0e-07 60.8 135 37.8
Zm00001eb405820 Zea mays HOM05D000091 ORTHO05D005533 1.7e-06 57.8 99 39.4


User provided reference genes

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